Rroxscaffold_7G00204580

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000201
Physical Location & Seq
Forward (+)
54039609 .. 54043648
4040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204580.1

Sequence Viewer

Length: 756 bp
ATGAAAGGAGAAGAAAAGCTATTACTCTATGAGTACATGCCTAACAAAAGCTTAGATTCCTTCATATTTGATCATACACAAGGCATGTTTCTCAATTGGGAGATGCGATTTAACATCATTTTGGGAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCAAGGTTGAGGATTATTCATAGAGATTTGAAAACCAGCAACGTGCTTTTGGATGAGGAGATGAACCCCAAAATATCCGACTTCGGCTTGGCCAGGATTGTTGGAGGCAAAGAAACCGAGGCAAACACAAATACAGTAGTAGGAACCTACGGCTACATGTCTCCAGAATATGCATTAGATGGAACTTTCTCCGTCAAATCAGATGTCTTTAGTTTCGGTGTGGTTCTTCTTGAGATAATCAGTGGAAAAAAGAATGCAGGATTTTATCAGTCCAAACAAACTTTCAGCTTACTTGGTTATACATGGGGACTCTGGACAGAAGACAATGTGTTGGATTTAATGGACAAGAATTTGGAAGAAAGTTGTAACAGAAGTGAATTTATAAAGTGTGTAAATGTTGGGTTCCTATGCGTACAAGAAGATCCGGTTGATCGCCCTACAATGTCAAATGTCATTACCTTGCTCGACAGTGAAACTGCAATCCCTGCAACTCCTAAACAACCAGCCTTTTTCATAAGGAGAGGCAACTCTAGCACAGCTTCCTCTTCTACTAAGCCAGAAACAATTTCTGAAATAACTACTCTGGAAGGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

251

Amino Acids

28.29

Weight (kDa)

5.03

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 206 3.1e-32 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 204 4.2e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
Acc36I ACCTGC 1 cut(s) 741
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 2 cut(s) 508, 536
AfaI GTAC 2 cut(s) 35, 573
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 2 cut(s) 162, 190
AjnI CCWGG 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 4 cut(s) 19, 51, 447, 698
AluI AGCT 4 cut(s) 19, 51, 447, 698
Alw26I GTCTC 1 cut(s) 324
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 249
ApoI RAATTY 2 cut(s) 508, 536
ArsI GACNNNNNNTTYG 2 cut(s) 348, 380
AvaI CYCGRG 1 cut(s) 132
BalI TGGCCA 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 486
BccI CCATC 1 cut(s) 332
BceAI ACGGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 253
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 1 cut(s) 690
BfuAI ACCTGC 1 cut(s) 741
Bme1390I CCNGG 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 2 cut(s) 304, 563
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 583
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 480
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 132
Bsp143I GATC 3 cut(s) 70, 580, 589
BspANI GGCC 1 cut(s) 251
BspLI GGNNCC 2 cut(s) 304, 563
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 1 cut(s) 575
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 3 cut(s) 70, 580, 589
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 295, 629
Bst6I CTCTTC 1 cut(s) 709
BstAPI GCANNNNNTGC 1 cut(s) 644
BstDEI CTNAG 2 cut(s) 52, 711
BstF5I GGATG 1 cut(s) 217
BstKTI GATC 3 cut(s) 73, 583, 592
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 3 cut(s) 70, 580, 589
BstMWI GCNNNNNNNGC 2 cut(s) 644, 690
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 3 cut(s) 40, 88, 319
BstSCI CCNGG 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 406, 634
BveI ACCTGC 1 cut(s) 741
Csp6I GTAC 2 cut(s) 34, 572
CviAII CATG 4 cut(s) 37, 85, 316, 462
CviJI RGCY 9 cut(s) 19, 51, 246, 251, 312, 447, 665, 698, 715
CviKI_1 RGCY 9 cut(s) 19, 51, 246, 251, 312, 447, 665, 698, 715
CviQI GTAC 2 cut(s) 34, 572
DdeI CTNAG 2 cut(s) 52, 711
DpnI GATC 3 cut(s) 72, 582, 591
DpnII GATC 3 cut(s) 70, 580, 589
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 709
EarI CTCTTC 1 cut(s) 709
Eco88I CYCGRG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 251
EcoT22I ATGCAT 1 cut(s) 334
FaeI CATG 4 cut(s) 40, 88, 319, 465
FaqI GGGAC 1 cut(s) 480
FatI CATG 4 cut(s) 36, 84, 315, 461
FbaI TGATCA 1 cut(s) 70
FokI GGATG 1 cut(s) 224
FspBI CTAG 1 cut(s) 690
GsuI CTGGAG 1 cut(s) 306
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 584
Hin1II CATG 4 cut(s) 40, 88, 319, 465
HindIII AAGCTT 1 cut(s) 49
HinfI GANTC 3 cut(s) 56, 158, 468
HpaII CCGG 1 cut(s) 584
Hpy188I TCNGA 3 cut(s) 238, 361, 730
Hpy188III TCNNGA 5 cut(s) 155, 323, 389, 472, 743
HpyAV CCTTC 2 cut(s) 70, 740
HpyCH4III ACNGT 2 cut(s) 295, 629
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 332, 416, 638, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 644, 690
HpyF3I CTNAG 2 cut(s) 52, 711
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 4 cut(s) 40, 88, 319, 465
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 70, 580, 589
LweI GCATC 1 cut(s) 93
MaeI CTAG 1 cut(s) 690
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 524
MalI GATC 3 cut(s) 72, 582, 591
MboI GATC 3 cut(s) 70, 580, 589
MboII GAAGA 7 cut(s) 23, 140, 377, 491, 527, 590, 696
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 1 cut(s) 580
MlsI TGGCCA 1 cut(s) 251
MluCI AATT 5 cut(s) 94, 126, 508, 536, 723
MluNI TGGCCA 1 cut(s) 251
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 3 cut(s) 241, 261, 471
MnlI CCTC 7 cut(s) 128, 162, 208, 257, 271, 674, 712
Mox20I TGGCCA 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 334
MscI TGGCCA 1 cut(s) 251
MseI TTAA 2 cut(s) 111, 497
Msp20I TGGCCA 1 cut(s) 251
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 253
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 644, 690
NdeII GATC 3 cut(s) 70, 580, 589
NlaIII CATG 4 cut(s) 40, 88, 319, 465
NlaIV GGNNCC 2 cut(s) 304, 563
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 3 cut(s) 40, 88, 319
PaeR7I CTCGAG 1 cut(s) 132
PciI ACATGT 1 cut(s) 315
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 2 cut(s) 56, 158
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PscI ACATGT 1 cut(s) 315
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 304, 563
PspXI VCTCGAGB 1 cut(s) 132
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 2 cut(s) 35, 573
RsaNI GTAC 2 cut(s) 34, 572
SaqAI TTAA 2 cut(s) 111, 497
Sau3AI GATC 3 cut(s) 70, 580, 589
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 1 cut(s) 253
SetI ASST 9 cut(s) 21, 53, 167, 204, 308, 449, 620, 700, 755
SfaNI GCATC 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 132, 389
SmoI CTYRAG 2 cut(s) 132, 389
Sse9I AATT 5 cut(s) 94, 126, 508, 536, 723
SspMI CTAG 1 cut(s) 690
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 295, 629
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 133, 624
TasI AATT 5 cut(s) 94, 126, 508, 536, 723
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 2 cut(s) 56, 158
Tru1I TTAA 2 cut(s) 111, 497
Tru9I TTAA 2 cut(s) 111, 497
TscAI CASTG 2 cut(s) 406, 634
TspDTI ATGAA 6 cut(s) 17, 52, 140, 167, 236, 661
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 2 cut(s) 406, 634
XapI RAATTY 2 cut(s) 508, 536
XceI RCATGY 3 cut(s) 40, 88, 319
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.