Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

45234 .. 45777

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtctccggaatatgcaatgaaaggactgttttcaatgaagtctgatgtatatagttttggtgttttactgctggaaatcattattggcaaaaagaatgctggttattaccatgaggagtatcctaattcaaatttggtttgggagttgtggaaagaaggcagagctgtggaagtcattgattcatctataggtgaatcttaccttgttagtgaagttataagatgcattcaaatcgcgctcttgtgtgtgcaagaatttgcaactgaccggccaaccatgtcagcagttgtttccatgttaggtaatgatgcagcccttccttcaccaagacgacccgcatttttactaaagagaacgagtcctagtggagacccatccagcagcgaaggagctaattcagtaaatgatgtcacatgtacaattatagaagctcgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

146

Amino Acids

16.04

Weight (kDa)

4.88

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccII	CGCG	1 cut(s)	239
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	133, 257
AfaI	GTAC	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	36, 132, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	167, 395, 434
AluI	AGCT	3 cut(s)	167, 395, 434
Alw26I	GTCTC	2 cut(s)	9, 366
Aor13HI	TCCGGA	1 cut(s)	7
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	314, 384
ApoI	RAATTY	2 cut(s)	133, 257
AspLEI	GCGC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	206, 318
BbvI	GCAGC	2 cut(s)	326, 396
BccI	CCATC	1 cut(s)	385
BcgI	CGANNNNNNTGC	2 cut(s)	217, 251
BciVI	GTATCC	1 cut(s)	132
BcoDI	GTCTC	2 cut(s)	9, 366
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	132
BisI	GCNGC	2 cut(s)	315, 385
BlsI	GCNGC	2 cut(s)	316, 386
BmsI	GCATC	2 cut(s)	215, 301
BsaI	GGTCTC	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	7
Bse118I	RCCGGY	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	7
BseGI	GGATG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	326, 396
Bsh1236I	CGCG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	274
BsiSI	CCGG	2 cut(s)	8, 271
BsmAI	GTCTC	2 cut(s)	9, 366
BsmI	GAATGC	2 cut(s)	103, 228
BsnI	GGCC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	366
Bsp13I	TCCGGA	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	419
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	270
Bst4CI	ACNGT	1 cut(s)	30
BstAUI	TGTACA	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	436
BstF5I	GGATG	1 cut(s)	377
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	241
BstMAI	GTCTC	2 cut(s)	9, 366
BstNSI	RCATGY	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	326, 396
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	377
Cac8I	GCNNGC	1 cut(s)	436
CfoI	GCGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	270
Csp6I	GTAC	1 cut(s)	420
CviAII	CATG	4 cut(s)	113, 280, 298, 417
CviJI	RGCY	5 cut(s)	167, 274, 317, 395, 434
CviKI_1	RGCY	5 cut(s)	167, 274, 317, 395, 434
CviQI	GTAC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	230
FaeI	CATG	4 cut(s)	116, 283, 301, 420
FatI	CATG	4 cut(s)	112, 279, 297, 416
FauI	CCCGC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	315, 385
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	2 cut(s)	315, 385
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	2 cut(s)	315, 385
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	2 cut(s)	8, 271
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	4 cut(s)	116, 283, 301, 420
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HinfI	GANTC	3 cut(s)	182, 197, 361
HpaII	CCGG	2 cut(s)	8, 271
HphI	GGTGA	2 cut(s)	206, 318
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	8
HpyAV	CCTTC	4 cut(s)	152, 329, 333, 383
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	17, 228, 253, 263, 314
Hsp92II	CATG	4 cut(s)	116, 283, 301, 420
HspAI	GCGC	1 cut(s)	239
Kpn2I	TCCGGA	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	5 cut(s)	21, 59, 87, 284, 394
Lsp1109I	GCAGC	2 cut(s)	326, 396
LweI	GCATC	2 cut(s)	215, 301
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	412
MluCI	AATT	5 cut(s)	127, 133, 257, 397, 423
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	230
MroI	TCCGGA	1 cut(s)	7
MspI	CCGG	2 cut(s)	8, 271
Mva1269I	GAATGC	2 cut(s)	103, 228
MvnI	CGCG	1 cut(s)	239
NlaIII	CATG	4 cut(s)	116, 283, 301, 420
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	420
PciI	ACATGT	1 cut(s)	416
PctI	GAATGC	2 cut(s)	103, 228
PfeI	GAWTC	2 cut(s)	182, 197
PkrI	GCNGC	2 cut(s)	316, 386
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PscI	ACATGT	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	221
RsaI	GTAC	1 cut(s)	421
RsaNI	GTAC	1 cut(s)	420
SatI	GCNGC	2 cut(s)	315, 385
SchI	GAGTC	1 cut(s)	370
SetI	ASST	6 cut(s)	169, 196, 207, 307, 397, 436
SfaNI	GCATC	2 cut(s)	215, 301
SfcI	CTRYAG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	127, 133, 257, 397, 423
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	30
TasI	AATT	5 cut(s)	127, 133, 257, 397, 423
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	182, 197
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	2 cut(s)	314, 384
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	35, 53, 174
XapI	RAATTY	2 cut(s)	133, 257
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.