Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

39337943 .. 39339434

Gene Structure 1492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1308300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTTTTTCATGGAAGATAGAACAGATCTTGATGATCAAAGTGAAATAAACTCAGAATTACCATTCTTTGATCTAACAACCATCGCAGCGGCCACGGACAATTTCTCTGTAGCAAACAAACTTGGGAAAGGAGGTTTTGGCTCAGTCTATAAGCGTGTACTTCATAATGGGAAGGAAGTAGCGGTGAAACGACTATCAAAGCATTCTGGAAACCTTGTCAAGATTATAGGTTGTTGCGTTGAAGATGAAGAGAAGATGCTAATCTATGAATACGTACCAAACAAAAGTTTGGACTCTTTTATTTTTGATGAAACGAAAAGAAATCTTTTAGATTGGACAAAACGCTTTGAGATTATTTGTGGGATTGCTAGAGGAATTTTATATCTTCATCAAGATTCGAGATTAAGGATTATCCATAGAGATCTAAAGGTCAGTAATGTTCTATTGGATGCATCTATGAGCCCCAAAATAGCAGATTTTGGTATGGCAAGAATATTTATGGGGGACCAATGTGAAGCAAATACACATCATGTGGTCGGAACATATGGTTATATGTTACCAGAGTATGCAATGAAAGGAATTTTTTCAGTAAAATCTGATGTGTACAGTTTTGGCGTTTTACTGCTAGAAATCTTAACTGGCAGAAGGAATTCGAGTTTCTACGACAAAAAATATCCCCACTCAAATTTGGTTGGATATGTTTGGAACTTGTGGAGAGAAGGCAAAGCCTTGGAAATCGTTGATTCATCAATGGGCGAATCGTACCATGTCAACGAAGTTGTGAGATGCATCCAAATTGCCCTCTTGTGTGTGCAAGAGTTTGCTGCTGACCGGCCAACCATGTCGGCGGTTGTTTTCATGCTAGGTAACGAGGTAGCAGTTCCTTCCCCAAAACAGCCTGCATTTTTGTTGAGGAGTTGTACTAGTGGAGATCCATCAACGAGTACTGGTTCTATAAATGATGTGACATGTACAGAAATAGAAGCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

331

Amino Acids

37.08

Weight (kDa)

5.8

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	39 - 285	2e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	69 - 219	2.1e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	89, 182, 848
AclWI	GGATC	1 cut(s)	926
AcoI	YGGCCR	2 cut(s)	90, 833
AcsI	RAATTY	4 cut(s)	375, 579, 649, 685
AfaI	GTAC	7 cut(s)	159, 276, 605, 764, 922, 946, 973
AflIII	ACRYGT	1 cut(s)	968
AgsI	TTSAA	1 cut(s)	242
AhlI	ACTAGT	1 cut(s)	923
AluBI	AGCT	1 cut(s)	986
AluI	AGCT	1 cut(s)	986
AlwI	GGATC	1 cut(s)	926
AoxI	GGCC	2 cut(s)	90, 833
ApeKI	GCWGC	2 cut(s)	86, 824
ApoI	RAATTY	4 cut(s)	375, 579, 649, 685
Asp700I	GAANNNNTTC	2 cut(s)	583, 649
AspS9I	GGNCC	1 cut(s)	505
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	505
BanII	GRGCYC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	98, 811
BccI	CCATC	2 cut(s)	89, 943
BclI	TGATCA	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	4 cut(s)	369, 626, 863, 924
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	2 cut(s)	25, 421
BisI	GCNGC	3 cut(s)	87, 90, 825
BlsI	GCNGC	3 cut(s)	88, 91, 826
BmcAI	AGTACT	1 cut(s)	946
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	505
BmiI	GGNNCC	1 cut(s)	506
BmsI	GCATC	5 cut(s)	246, 439, 461, 776, 798
BsaAI	YACGTR	1 cut(s)	274
BsaBI	GATNNNNATC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	93, 729
Bse118I	RCCGGY	1 cut(s)	831
Bse1I	ACTGG	2 cut(s)	643, 952
Bse3DI	GCAATG	1 cut(s)	576
Bse8I	GATNNNNATC	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	93, 729
BseGI	GGATG	2 cut(s)	454, 789
BseJI	GATNNNNATC	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	2 cut(s)	66, 156
BseNI	ACTGG	2 cut(s)	643, 952
BseRI	GAGGAG	1 cut(s)	928
BseXI	GCAGC	2 cut(s)	98, 811
BshFI	GGCC	2 cut(s)	92, 835
BsiSI	CCGG	1 cut(s)	832
BslFI	GGGAC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	92, 835
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	2 cut(s)	603, 971
Bsp143I	GATC	5 cut(s)	25, 34, 70, 421, 931
BspACI	CCGC	3 cut(s)	89, 182, 848
BspANI	GGCC	2 cut(s)	92, 835
BspCNI	CTCAG	2 cut(s)	65, 155
BspLI	GGNNCC	1 cut(s)	506
BspPI	GGATC	1 cut(s)	926
BsrDI	GCAATG	1 cut(s)	576
BsrFI	RCCGGY	1 cut(s)	831
BsrGI	TGTACA	2 cut(s)	603, 971
BsrI	ACTGG	2 cut(s)	643, 952
BssAI	RCCGGY	1 cut(s)	831
BssECI	CCNNGG	2 cut(s)	93, 729
BssMI	GATC	5 cut(s)	25, 34, 70, 421, 931
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	2 cut(s)	603, 971
BstBAI	YACGTR	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	900, 988
BstDEI	CTNAG	2 cut(s)	52, 142
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	454, 789
BstKTI	GATC	5 cut(s)	28, 37, 73, 424, 934
BstMBI	GATC	5 cut(s)	25, 34, 70, 421, 931
BstNSI	RCATGY	1 cut(s)	972
BstSFI	CTRYAG	1 cut(s)	108
BstSNI	TACGTA	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	98, 811
BstX2I	RGATCY	3 cut(s)	25, 421, 931
BstYI	RGATCY	3 cut(s)	25, 421, 931
BsuRI	GGCC	2 cut(s)	92, 835
BtgI	CCRYGG	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	454, 789
Cac8I	GCNNGC	2 cut(s)	900, 988
Cfr10I	RCCGGY	1 cut(s)	831
Cfr13I	GGNCC	1 cut(s)	505
Csp6I	GTAC	7 cut(s)	158, 275, 604, 763, 921, 945, 972
CviAII	CATG	6 cut(s)	10, 530, 767, 841, 859, 969
CviJI	RGCY	7 cut(s)	92, 141, 462, 728, 835, 898, 986
CviKI_1	RGCY	7 cut(s)	92, 141, 462, 728, 835, 898, 986
CviQI	GTAC	7 cut(s)	158, 275, 604, 763, 921, 945, 972
DdeI	CTNAG	2 cut(s)	52, 142
DpnI	GATC	5 cut(s)	27, 36, 72, 423, 933
DpnII	GATC	5 cut(s)	25, 34, 70, 421, 931
EaeI	YGGCCR	2 cut(s)	90, 833
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco105I	TACGTA	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	505
EcoRI	GAATTC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	2 cut(s)	454, 791
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	13, 533, 770, 844, 862, 972
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	6 cut(s)	9, 529, 766, 840, 858, 968
FauNDI	CATATG	1 cut(s)	544
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	87, 90, 825
FokI	GGATG	2 cut(s)	461, 776
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	87, 90, 825
FspBI	CTAG	4 cut(s)	369, 626, 863, 924
GluI	GCNGC	3 cut(s)	87, 90, 825
HaeIII	GGCC	2 cut(s)	92, 835
HapII	CCGG	1 cut(s)	832
Hin1II	CATG	6 cut(s)	13, 533, 770, 844, 862, 972
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	4 cut(s)	293, 395, 743, 758
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	3 cut(s)	158, 604, 772
Hpy188I	TCNGA	3 cut(s)	55, 539, 598
Hpy188III	TCNNGA	5 cut(s)	29, 207, 220, 392, 399
Hpy8I	GTNNAC	3 cut(s)	158, 604, 772
HpyAV	CCTTC	4 cut(s)	166, 639, 713, 894
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	452, 569, 789, 814, 902
HpyF3I	CTNAG	2 cut(s)	52, 142
HpySE526I	ACGT	1 cut(s)	273
Hsp92II	CATG	6 cut(s)	13, 533, 770, 844, 862, 972
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	5 cut(s)	25, 34, 70, 421, 931
LpnPI	CCDG	6 cut(s)	192, 573, 624, 845, 912, 933
Lsp1109I	GCAGC	2 cut(s)	98, 811
LweI	GCATC	5 cut(s)	246, 439, 461, 776, 798
MaeI	CTAG	4 cut(s)	369, 626, 863, 924
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	3 cut(s)	555, 866, 964
MalI	GATC	5 cut(s)	27, 36, 72, 423, 933
MboI	GATC	5 cut(s)	25, 34, 70, 421, 931
MboII	GAAGA	5 cut(s)	26, 254, 260, 265, 377
MflI	RGATCY	3 cut(s)	25, 421, 931
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	7 cut(s)	56, 100, 375, 579, 649, 685, 795
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	517, 673
MnlI	CCTC	5 cut(s)	125, 365, 812, 865, 906
Mph1103I	ATGCAT	2 cut(s)	454, 791
MroXI	GAANNNNTTC	2 cut(s)	583, 649
MseI	TTAA	2 cut(s)	404, 635
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	832
Mva1269I	GAATGC	1 cut(s)	202
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	5 cut(s)	25, 34, 70, 421, 931
NlaIII	CATG	6 cut(s)	13, 533, 770, 844, 862, 972
NlaIV	GGNNCC	1 cut(s)	506
NmuCI	GTSAC	1 cut(s)	964
NsiI	ATGCAT	2 cut(s)	454, 791
NspI	RCATGY	1 cut(s)	972
PciI	ACATGT	1 cut(s)	968
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	2 cut(s)	583, 649
PfeI	GAWTC	3 cut(s)	395, 743, 758
PkrI	GCNGC	3 cut(s)	88, 91, 826
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Ppu21I	YACGTR	1 cut(s)	274
PscI	ACATGT	1 cut(s)	968
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	505
PsuI	RGATCY	3 cut(s)	25, 421, 931
RsaI	GTAC	7 cut(s)	159, 276, 605, 764, 922, 946, 973
RsaNI	GTAC	7 cut(s)	158, 275, 604, 763, 921, 945, 972
SaqAI	TTAA	2 cut(s)	404, 635
SatI	GCNGC	3 cut(s)	87, 90, 825
Sau3AI	GATC	5 cut(s)	25, 34, 70, 421, 931
Sau96I	GGNCC	1 cut(s)	505
ScaI	AGTACT	1 cut(s)	946
SchI	GAGTC	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	8 cut(s)	136, 216, 232, 276, 432, 868, 876, 988
SfaNI	GCATC	5 cut(s)	246, 439, 461, 776, 798
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	505
SnaBI	TACGTA	1 cut(s)	274
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	7 cut(s)	56, 100, 375, 579, 649, 685, 795
SsiI	CCGC	3 cut(s)	89, 182, 848
SspI	AATATT	1 cut(s)	495
SspMI	CTAG	4 cut(s)	369, 626, 863, 924
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	1 cut(s)	276
TaqI	TCGA	2 cut(s)	398, 653
TasI	AATT	7 cut(s)	56, 100, 375, 579, 649, 685, 795
TatI	WGTACW	5 cut(s)	157, 603, 920, 944, 971
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	3 cut(s)	395, 743, 758
Tru1I	TTAA	2 cut(s)	404, 635
Tru9I	TTAA	2 cut(s)	404, 635
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	2 cut(s)	86, 824
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	8 cut(s)	152, 261, 282, 324, 377, 587, 735, 847
TspGWI	ACGGA	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	505
XapI	RAATTY	4 cut(s)	375, 579, 649, 685
XceI	RCATGY	1 cut(s)	972
XmnI	GAANNNNTTC	2 cut(s)	583, 649
XspI	CTAG	4 cut(s)	369, 626, 863, 924
ZrmI	AGTACT	1 cut(s)	946
Zsp2I	ATGCAT	2 cut(s)	454, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.