Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

9252221 .. 9252753

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATCTGCAGTGGCTATATGTCTCCTGAATACGCAATGGATGGTCTCTTCTCAATCAAGTCGGATGTATTTAGTTTTGGTGTTCTAGTATTGGAGATTGTTAGTGGTCAAAAGAACAGAGGATTCTATTATTCAAACAATGAGCTAAACCTCCTAGGACATTTTTGGGAGCTATGGAATGGAGGTCGTGCGTTGGATATAATAGATTCATCAGTTGGTGATTCATTTTCGGAATCTGAGGTGTTGAGATGCATGCAGGTAGGGCTTTTATGCGTCCAAGAGCTTGCAGAAGATAGGCCTACAATGTCCTCTGTGGTTCTAATGTTATGTAGTGAAACTGCATCATTACCGCAGCCTAAAAAACCCAGTTTTTGCCTAGCAAGGAAACCCGAAACAGACGAGTCAAGCACTGTAAACCAAGTAACTATCACAACATTAGATCCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 DUF3660 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

149

Amino Acids

16.52

Weight (kDa)

4.53

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	5 - 106	3.2e-08	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	111 - 149	3.2e-13	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	434
AgsI	TTSAA	1 cut(s)	135
AluBI	AGCT	3 cut(s)	145, 172, 283
AluI	AGCT	3 cut(s)	145, 172, 283
Alw26I	GTCTC	2 cut(s)	27, 50
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	352
AspA2I	CCTAGG	2 cut(s)	154, 443
AsuHPI	GGTGA	1 cut(s)	230
AvrII	CCTAGG	2 cut(s)	154, 443
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	27, 50
BfaI	CTAG	4 cut(s)	86, 155, 377, 444
BfmI	CTRYAG	1 cut(s)	7
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	1 cut(s)	353
BlnI	CCTAGG	2 cut(s)	154, 443
BlsI	GCNGC	1 cut(s)	354
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	2 cut(s)	239, 350
BmuI	ACTGGG	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	154, 443
Bse1I	ACTGG	1 cut(s)	366
Bse3DI	GCAATG	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	154, 443
BseGI	GGATG	2 cut(s)	46, 70
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	27, 50
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	3, 439
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	1 cut(s)	229
BspMAI	CTGCAG	1 cut(s)	11
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	2 cut(s)	154, 443
BssMI	GATC	2 cut(s)	3, 439
BssT1I	CCWWGG	2 cut(s)	154, 443
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	2 cut(s)	254, 285
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	46, 70
BstKTI	GATC	2 cut(s)	6, 442
BstMAI	GTCTC	2 cut(s)	27, 50
BstMBI	GATC	2 cut(s)	3, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	46, 70
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 408
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	254, 285
CseI	GACGC	1 cut(s)	262
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	7 cut(s)	15, 145, 172, 265, 283, 298, 355
CviKI_1	RGCY	7 cut(s)	15, 145, 172, 265, 283, 298, 355
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	5, 441
DpnII	GATC	2 cut(s)	3, 439
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	154, 443
Eco147I	AGGCCT	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	50
EcoT14I	CCWWGG	2 cut(s)	154, 443
EcoT22I	ATGCAT	1 cut(s)	254
ErhI	CCWWGG	2 cut(s)	154, 443
FaeI	CATG	1 cut(s)	256
FaiI	YATR	7 cut(s)	18, 20, 175, 200, 254, 271, 328
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	353
FokI	GGATG	2 cut(s)	53, 77
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	4 cut(s)	86, 155, 377, 444
GluI	GCNGC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	298
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	1 cut(s)	256
HinfI	GANTC	5 cut(s)	123, 206, 221, 233, 401
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	3 cut(s)	64, 232, 238
Hpy188III	TCNNGA	1 cut(s)	26
Hpy8I	GTNNAC	1 cut(s)	415
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	5 cut(s)	9, 252, 256, 287, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	3, 439
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	3 cut(s)	39, 242, 379
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	2 cut(s)	239, 350
MaeI	CTAG	4 cut(s)	86, 155, 377, 444
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	2 cut(s)	5, 441
MboI	GATC	2 cut(s)	3, 439
MboII	GAAGA	2 cut(s)	40, 302
MflI	RGATCY	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	42, 174
MnlI	CCTC	5 cut(s)	113, 161, 176, 232, 319
Mph1103I	ATGCAT	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	3, 439
NlaIII	CATG	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	254
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PceI	AGGCCT	1 cut(s)	298
PfeI	GAWTC	4 cut(s)	123, 206, 221, 233
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	439
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	3, 439
SchI	GAGTC	1 cut(s)	410
SetI	ASST	8 cut(s)	147, 153, 174, 187, 243, 261, 285, 449
SfaNI	GCATC	2 cut(s)	239, 350
SfcI	CTRYAG	1 cut(s)	7
SphI	GCATGC	1 cut(s)	256
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	4 cut(s)	86, 155, 377, 444
StuI	AGGCCT	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	154, 443
TaaI	ACNGT	1 cut(s)	412
TfiI	GAWTC	4 cut(s)	123, 206, 221, 233
TscAI	CASTG	2 cut(s)	16, 415
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	198, 213
TspRI	CASTG	2 cut(s)	16, 415
XceI	RCATGY	1 cut(s)	256
XmaJI	CCTAGG	2 cut(s)	154, 443
XspI	CTAG	4 cut(s)	86, 155, 377, 444
Zsp2I	ATGCAT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.