Rh5CG282300

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Forward (+)
30835336 .. 30835605
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG282300.1

Sequence Viewer

Length: 270 bp
ATGGATAAGAAGTTGGATGGCTCCTATGCTCTAACAGAAGTGTCACGATGCATTCACATAGCTCTGTTGTGTGTGCAACAACAACCAGAAGATAGACCAAACATGGCATCTGTGGTCCTAATGTTGGGCGGTGAGGGATCATTGCCTGTGCCAAAGCAACCTGGTTTCTTCACTGAAAGGAATCCGTTTGAAGCAGAGAACTCTTCATCAGGCAAATTGGAATCATATTCAATAAATGACATGAGTGTAACAGAGTTAGAGGCACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

89

Amino Acids

9.79

Weight (kDa)

4.7

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 46 - 89 7.4e-12 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 191, 231
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 115
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 38, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 124
BsmI GAATGC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 140
BssMI GATC 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 208
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 115
CsiI ACCWGGT 1 cut(s) 160
CviAII CATG 2 cut(s) 103, 241
CviJI RGCY 2 cut(s) 21, 62
CviKI_1 RGCY 2 cut(s) 21, 62
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 53
FaeI CATG 2 cut(s) 106, 244
FaiI YATR 5 cut(s) 27, 59, 104, 226, 242
FatI CATG 2 cut(s) 102, 240
FokI GGATG 1 cut(s) 29
Hin1II CATG 2 cut(s) 106, 244
HinfI GANTC 2 cut(s) 181, 221
HphI GGTGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 51, 76
Hsp92II CATG 2 cut(s) 106, 244
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 5 cut(s) 99, 147, 159, 174, 195
LweI GCATC 2 cut(s) 38, 116
MabI ACCWGGT 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 42, 247
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 3 cut(s) 101, 160, 195
MluCI AATT 1 cut(s) 215
MnlI CCTC 2 cut(s) 127, 253
Mph1103I ATGCAT 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 51
MvaI CCWGG 1 cut(s) 162
NdeII GATC 1 cut(s) 137
NlaIII CATG 2 cut(s) 106, 244
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 53
PctI GAATGC 1 cut(s) 51
PfeI GAWTC 2 cut(s) 181, 221
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 162
SetI ASST 2 cut(s) 64, 163
SexAI ACCWGGT 1 cut(s) 160
SfaNI GCATC 2 cut(s) 38, 116
SgeI CNNG 8 cut(s) 57, 98, 115, 158, 173, 174, 222, 253
SinI GGWCC 1 cut(s) 115
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 160
TasI AATT 1 cut(s) 215
TfiI GAWTC 2 cut(s) 181, 221
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 174
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.