Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000149.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

185931 .. 187154

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000149.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ctggcagatggacaagaatttgctgtgaagaggctttcaagcagttctggccaaggatttgacgagttcatgaatgaaattataatgattgccaaacttcagcaccgaaatcttgtaaagattcttggttgttgtgtgcaagaggagaaaatgctgatgtacgaatacatgcccaacggaagcctggacaacttcatttttgatcaaacaagggcagtactgttagattggcctaaacgtttccacatcatttgtggaattgctcggggtctcctctatctccaccaagattccaggctaaggattatacatagagatctaaaagcaagtaatgttctacttgatgatgaaatgaatcctaaaatttcagactttggcttggctagaatattaactggaggagatcagactggaggaaatactaagagagtggtcgggacatatggctacatggcacctgaatatgctgctgatggggtattttctgtgaaatctgatgtctttagcttcggggcttggagatcgtggaatgaaggaaggcctttagaattgattgattcctggttagagagctcatgtaatctttcggaagtgttacgttgcatccaagttggtcttttgtgcttgcaacatcaccctgaggatcggccaagcatggcgtctgtggttataatgttgggaagtgatattgcattggctcaacctaaacaacctggtttctttctggaaaaggaacatgaagcaggccctgatataggtaatgaatcatcaaccaatgaaatatccatttcgcttttgcaagctcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

269

Amino Acids

30.11

Weight (kDa)

5.29

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	83, 671
AccB1I	GGYRCC	1 cut(s)	454
AclI	AACGTT	1 cut(s)	238
AclWI	GGATC	1 cut(s)	651
AcoI	YGGCCR	2 cut(s)	49, 647
AcsI	RAATTY	2 cut(s)	17, 363
AcuI	CTGAAG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	659
AfaI	GTAC	2 cut(s)	161, 219
AfiI	CCNNNNNNNGG	2 cut(s)	300, 755
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	4 cut(s)	183, 293, 560, 712
AluBI	AGCT	3 cut(s)	507, 573, 803
AluI	AGCT	3 cut(s)	507, 573, 803
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	651
AlwNI	CAGNNNCTG	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	5 cut(s)	49, 230, 539, 647, 745
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	17, 363
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	264
AxyI	CCTNAGG	1 cut(s)	639
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	2 cut(s)	2, 467
BciT130I	CCWGG	4 cut(s)	185, 295, 562, 714
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	384
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	4 cut(s)	185, 295, 562, 714
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	4 cut(s)	185, 295, 562, 714
BmsI	GCATC	1 cut(s)	612
BpmI	CTGGAG	2 cut(s)	417, 432
Bpu10I	CCTNAGC	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	659
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	2 cut(s)	300, 755
Bse1I	ACTGG	2 cut(s)	400, 415
Bse21I	CCTNAGG	1 cut(s)	639
BseBI	CCWGG	4 cut(s)	185, 295, 562, 714
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	300, 755
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	2 cut(s)	400, 415
BseRI	GAGGAG	3 cut(s)	158, 263, 414
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	5 cut(s)	51, 232, 541, 649, 747
BshNI	GGYRCC	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	575
BsiHKCI	CYCGRG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	300, 755
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	5 cut(s)	51, 232, 541, 649, 747
Bso31I	GGTCTC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	575
Bsp143I	GATC	5 cut(s)	202, 316, 403, 521, 643
BspANI	GGCC	5 cut(s)	51, 232, 541, 649, 747
BspCNI	CTCAG	1 cut(s)	631
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	400, 415
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	5 cut(s)	202, 316, 403, 521, 643
BssNI	GRCGYC	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	4 cut(s)	185, 295, 562, 714
Bst4CI	ACNGT	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	626, 745, 801
BstDEI	CTNAG	3 cut(s)	299, 423, 639
BstENI	CCTNNNNNAGG	1 cut(s)	753
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	5 cut(s)	205, 319, 406, 524, 646
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	5 cut(s)	202, 316, 403, 521, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	4 cut(s)	185, 295, 562, 714
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	4 cut(s)	183, 293, 560, 712
BstV1I	GCAGC	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	51, 232, 541, 649, 747
BtsCI	GGATG	1 cut(s)	603
Cac8I	GCNNGC	3 cut(s)	626, 745, 801
CaiI	CAGNNNCTG	1 cut(s)	749
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	746
CseI	GACGC	1 cut(s)	648
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	160, 218
CspCI	CAANNNNNGTGG	2 cut(s)	233, 268
CviAII	CATG	6 cut(s)	70, 169, 451, 576, 655, 737
CviQI	GTAC	2 cut(s)	160, 218
DdeI	CTNAG	3 cut(s)	299, 423, 639
DpnI	GATC	5 cut(s)	204, 318, 405, 523, 645
DpnII	GATC	5 cut(s)	202, 316, 403, 521, 643
EaeI	YGGCCR	2 cut(s)	49, 647
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	541
Eco24I	GRGCYC	1 cut(s)	575
Eco31I	GGTCTC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	573
EcoNI	CCTNNNNNAGG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRII	CCWGG	4 cut(s)	183, 293, 560, 712
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	575
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	6 cut(s)	73, 172, 454, 579, 658, 740
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	6 cut(s)	69, 168, 450, 575, 654, 736
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	575
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	2 cut(s)	417, 432
HaeIII	GGCC	5 cut(s)	51, 232, 541, 649, 747
HgaI	GACGC	1 cut(s)	648
Hin1I	GRCGYC	1 cut(s)	659
Hin1II	CATG	6 cut(s)	73, 172, 454, 579, 658, 740
HinfI	GANTC	5 cut(s)	121, 290, 355, 557, 764
HphI	GGTGA	1 cut(s)	626
Hpy188I	TCNGA	4 cut(s)	370, 408, 496, 589
Hpy188III	TCNNGA	3 cut(s)	70, 436, 725
HpyAV	CCTTC	2 cut(s)	527, 531
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4IV	ACGT	2 cut(s)	238, 598
HpyCH4V	TGCA	5 cut(s)	139, 603, 628, 692, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	3 cut(s)	299, 423, 639
HpySE526I	ACGT	2 cut(s)	238, 598
Hsp92I	GRCGYC	1 cut(s)	659
Hsp92II	CATG	6 cut(s)	73, 172, 454, 579, 658, 740
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	202, 316, 403, 521, 643
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	1 cut(s)	612
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	238, 598
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	5 cut(s)	204, 318, 405, 523, 645
MboI	GATC	5 cut(s)	202, 316, 403, 521, 643
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	575
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	5 cut(s)	17, 78, 258, 363, 548
MluNI	TGGCCA	1 cut(s)	51
MnlI	CCTC	6 cut(s)	24, 136, 284, 392, 407, 634
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	1 cut(s)	392
Msp20I	TGGCCA	1 cut(s)	51
MspR9I	CCNGG	4 cut(s)	185, 295, 562, 714
MvaI	CCWGG	4 cut(s)	185, 295, 562, 714
MwoI	GCNNNNNNNGC	1 cut(s)	48
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	5 cut(s)	202, 316, 403, 521, 643
NlaIII	CATG	6 cut(s)	73, 172, 454, 579, 658, 740
NlaIV	GGNNCC	1 cut(s)	456
NspI	RCATGY	1 cut(s)	172
PagI	TCATGA	1 cut(s)	69
PceI	AGGCCT	1 cut(s)	541
PfeI	GAWTC	5 cut(s)	121, 290, 355, 557, 764
PkrI	GCNGC	1 cut(s)	469
PsiI	TTATAA	2 cut(s)	83, 671
Psp124BI	GAGCTC	1 cut(s)	575
Psp1406I	AACGTT	1 cut(s)	238
Psp6I	CCWGG	4 cut(s)	183, 293, 560, 712
PspGI	CCWGG	4 cut(s)	183, 293, 560, 712
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	1 cut(s)	746
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	161, 219
RsaNI	GTAC	2 cut(s)	160, 218
SacI	GAGCTC	1 cut(s)	575
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	5 cut(s)	202, 316, 403, 521, 643
Sau96I	GGNCC	1 cut(s)	746
ScaI	AGTACT	1 cut(s)	219
ScrFI	CCNGG	4 cut(s)	185, 295, 562, 714
SduI	GDGCHC	1 cut(s)	575
SetI	ASST	9 cut(s)	241, 460, 509, 575, 601, 706, 715, 760, 805
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	1 cut(s)	612
Sse9I	AATT	5 cut(s)	17, 78, 258, 363, 548
SseBI	AGGCCT	1 cut(s)	541
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	575
StuI	AGGCCT	1 cut(s)	541
StyD4I	CCNGG	4 cut(s)	183, 293, 560, 712
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	222
TaiI	ACGT	2 cut(s)	241, 601
TasI	AATT	5 cut(s)	17, 78, 258, 363, 548
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	5 cut(s)	121, 290, 355, 557, 764
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseI	GCWGC	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	192
XagI	CCTNNNNNAGG	1 cut(s)	753
XapI	RAATTY	2 cut(s)	17, 363
XceI	RCATGY	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	2 cut(s)	181, 251
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.