Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005555.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

12828 .. 13199

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005555.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgtcaccggagtatgcgatggaaggagtattttcagtgaagtctgatgtatacagtttcggtgttctgctgctagaaatcgttactggcagaaagaacaccggttactactatgataatcctgactcaaatttggttggatatgtttggaacttgtggaaagaaggccgagccttggaaatcgtcgacacatctttgggtgaatcctaccccataagtgaagttctaaggtgcattcaaattgcgctcttgtgcgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

86

Amino Acids

9.69

Weight (kDa)

4.41

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 186
AcsI	RAATTY	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	239
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	130
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	2 cut(s)	7, 101
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	8, 102
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	174
BssNAI	GTATAC	1 cut(s)	52
BssT1I	CCWWGG	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	57
BstZ17I	GTATAC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	168
BtgZI	GCGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	101
CspAI	ACCGGT	1 cut(s)	101
CviJI	RGCY	2 cut(s)	168, 173
CviKI_1	RGCY	2 cut(s)	168, 173
DdeI	CTNAG	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaiI	YATR	5 cut(s)	15, 52, 114, 144, 215
FblI	GTMKAC	2 cut(s)	51, 186
Fnu4HI	GCNGC	1 cut(s)	71
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	8, 102
HhaI	GCGC	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	125, 203
HpaII	CCGG	2 cut(s)	8, 102
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	52, 187
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	52, 187
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	17, 158
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	245
LpnPI	CCDG	4 cut(s)	21, 72, 115, 135
Lsp1109I	GCAGC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	3 cut(s)	3, 82, 104
MluCI	AATT	2 cut(s)	130, 240
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	118
MspI	CCGG	2 cut(s)	8, 102
Mva1269I	GAATGC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	3
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PsrI	GAACNNNNNNTAC	2 cut(s)	89, 121
SalI	GTCGAC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	119
SetI	ASST	1 cut(s)	233
SgeI	CNNG	8 cut(s)	20, 86, 99, 114, 134, 166, 182, 187
Sse9I	AATT	2 cut(s)	130, 240
SspMI	CTAG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	130, 240
TfiI	GAWTC	1 cut(s)	203
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	3
TspRI	CASTG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	130
XmiI	GTMKAC	2 cut(s)	51, 186
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.