pycom05g19890

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000201
Physical Location & Seq
Forward (+)
22789463 .. 22790268
806 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19890.3

Sequence Viewer

Length: 537 bp
ATGAACCCCAAGATTTCAGACTTCGGCCTGGCTAAAACATTTGGCGGTGAACAAAGTCAGGCCAACACAAATAGAGTGGTTGGAACCTATGGTTATATGTCTCCGGAATATGCAGCAGATGGAATTTTTTCGATGAAATCTGATGCGTTTAGCTTTGGAGTCATACTGCTCGAGATGTTGAGTAGGAATAAGAACAGGGGATTTTGTCATCCAGATCACGACCACAACCTTCTTGGACATGCATGGATACGATGGATTCAAGATAAACCACTAGAAGTGATCGATAAGACGTTTTGTGATTCATGCAACATATCTGAAGTGATAAGGTGTCTTCATGTGGGGCTGTTATGTGTGCAAAGAGTACCTGAGGATAGACCAAGCATGTCATCTGTGGTTCTGATGTTGAGCAGTGATGTTGCCTTGCCGACTCCAAAGCAGCCTGGTTTCTACACTGAACGAAGCGTCCCTGAATCACCATCCAGGACGCTTCTATGTTCCAAGAATACTTTCAGCATTACATTGATGGAACCTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

179

Amino Acids

19.92

Weight (kDa)

6.5

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 1 cut(s) 363
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 3 cut(s) 27, 439, 479
AjuI GAANNNNNNNTTGG 2 cut(s) 491, 523
AloI GAACNNNNNNTCC 2 cut(s) 447, 479
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 25, 60
ApeKI GCWGC 2 cut(s) 113, 436
ApoI RAATTY 1 cut(s) 123
Asp700I GAANNNNTTC 2 cut(s) 127, 506
AsuHPI GGTGA 2 cut(s) 59, 465
AvaI CYCGRG 1 cut(s) 170
AxyI CCTNAGG 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 323
BbvI GCAGC 2 cut(s) 125, 448
BccI CCATC 4 cut(s) 113, 246, 484, 517
BciT130I CCWGG 3 cut(s) 29, 441, 481
BciVI GTATCC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 2 cut(s) 114, 437
BlsI GCNGC 2 cut(s) 115, 438
Bme1390I CCNGG 3 cut(s) 29, 441, 481
BmeT110I CYCGRG 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 85, 528
BmrFI CCNGG 3 cut(s) 29, 441, 481
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 530
BsaWI WCCGGW 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 366
BseAI TCCGGA 1 cut(s) 103
BseBI CCWGG 3 cut(s) 29, 441, 481
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 530
BseGI GGATG 2 cut(s) 208, 476
BseMII CTCAG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 125, 448
BshFI GGCC 2 cut(s) 27, 62
BshVI ATCGAT 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 2 cut(s) 27, 62
BsoBI CYCGRG 1 cut(s) 170
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 2 cut(s) 214, 279
BspACI CCGC 1 cut(s) 45
BspANI GGCC 2 cut(s) 27, 62
BspCNI CTCAG 1 cut(s) 358
BspDI ATCGAT 1 cut(s) 282
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 85, 528
BssECI CCNNGG 1 cut(s) 530
BssMI GATC 2 cut(s) 214, 279
Bst2UI CCWGG 3 cut(s) 29, 441, 481
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 208, 476
BstKTI GATC 2 cut(s) 217, 282
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 2 cut(s) 214, 279
BstNI CCWGG 3 cut(s) 29, 441, 481
BstNSI RCATGY 2 cut(s) 242, 385
BstSCI CCNGG 3 cut(s) 27, 439, 479
BstV1I GCAGC 2 cut(s) 125, 448
BstV2I GAAGAC 1 cut(s) 323
Bsu15I ATCGAT 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 366
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 2 cut(s) 27, 62
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 2 cut(s) 208, 476
BtsI GCAGTG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 415, 450
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 451, 493
Csp6I GTAC 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 5 cut(s) 239, 243, 303, 335, 382
CviJI RGCY 6 cut(s) 27, 32, 62, 153, 343, 439
CviKI_1 RGCY 6 cut(s) 27, 32, 62, 153, 343, 439
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 1 cut(s) 366
DpnI GATC 2 cut(s) 216, 281
DpnII GATC 2 cut(s) 214, 279
Eco57I CTGAAG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 27, 439, 479
EcoT22I ATGCAT 1 cut(s) 244
FaeI CATG 5 cut(s) 242, 246, 306, 338, 385
FaqI GGGAC 1 cut(s) 449
FatI CATG 5 cut(s) 238, 242, 302, 334, 381
Fnu4HI GCNGC 2 cut(s) 114, 437
FokI GGATG 2 cut(s) 195, 463
Fsp4HI GCNGC 2 cut(s) 114, 437
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 114, 437
HaeIII GGCC 2 cut(s) 27, 62
HapII CCGG 1 cut(s) 104
HgaI GACGC 2 cut(s) 451, 493
Hin1II CATG 5 cut(s) 242, 246, 306, 338, 385
HinfI GANTC 5 cut(s) 159, 256, 299, 427, 470
HpaII CCGG 1 cut(s) 104
HphI GGTGA 2 cut(s) 59, 465
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 19, 142, 316, 399
Hpy188III TCNNGA 5 cut(s) 104, 172, 212, 218, 260
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 4 cut(s) 113, 242, 306, 355
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 5 cut(s) 242, 246, 306, 338, 385
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 214, 279
Lsp1109I GCAGC 2 cut(s) 125, 448
LweI GCATC 1 cut(s) 133
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 290
MalI GATC 2 cut(s) 216, 281
MboI GATC 2 cut(s) 214, 279
MboII GAAGA 1 cut(s) 323
MluCI AATT 1 cut(s) 123
MlyI GAGTC 2 cut(s) 168, 421
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 1 cut(s) 361
Mph1103I ATGCAT 1 cut(s) 244
MroI TCCGGA 1 cut(s) 103
MroXI GAANNNNTTC 2 cut(s) 127, 506
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 3 cut(s) 29, 441, 481
MvaI CCWGG 3 cut(s) 29, 441, 481
NdeII GATC 2 cut(s) 214, 279
NlaIII CATG 5 cut(s) 242, 246, 306, 338, 385
NlaIV GGNNCC 2 cut(s) 85, 528
NsiI ATGCAT 1 cut(s) 244
NspI RCATGY 2 cut(s) 242, 385
PaeR7I CTCGAG 1 cut(s) 170
PdmI GAANNNNTTC 2 cut(s) 127, 506
PfeI GAWTC 3 cut(s) 256, 299, 470
PfoI TCCNGGA 1 cut(s) 479
PkrI GCNGC 2 cut(s) 115, 438
PleI GAGTC 2 cut(s) 167, 421
PpsI GAGTC 2 cut(s) 167, 421
Psp6I CCWGG 3 cut(s) 27, 439, 479
PspGI CCWGG 3 cut(s) 27, 439, 479
PspN4I GGNNCC 2 cut(s) 85, 528
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SatI GCNGC 2 cut(s) 114, 437
Sau3AI GATC 2 cut(s) 214, 279
SchI GAGTC 2 cut(s) 168, 421
ScrFI CCNGG 3 cut(s) 29, 441, 481
SetI ASST 7 cut(s) 89, 155, 231, 293, 329, 367, 532
SfaNI GCATC 1 cut(s) 133
Sfr274I CTCGAG 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 3 cut(s) 27, 439, 479
TaiI ACGT 1 cut(s) 293
TaqI TCGA 3 cut(s) 131, 171, 282
TasI AATT 1 cut(s) 123
TfiI GAWTC 3 cut(s) 256, 299, 470
TscAI CASTG 2 cut(s) 415, 457
TseI GCWGC 2 cut(s) 113, 436
TspDTI ATGAA 4 cut(s) 17, 149, 291, 323
TspRI CASTG 2 cut(s) 415, 457
XapI RAATTY 1 cut(s) 123
XceI RCATGY 2 cut(s) 242, 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 170
XmnI GAANNNNTTC 2 cut(s) 127, 506
XspI CTAG 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.