Rh5CG424200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Reverse (-)
58655910 .. 58656257
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG424200.1

Sequence Viewer

Length: 348 bp
ATGACTAATTATGGTCATATTGGTTTGCTATTTCTCCAGGCATGGTTATTGTGGAAACAAAACAAGGGTTTGGAGCTAATGGATGTATGCCTGGAGGACTCATATGTTGAGTTTGAATTGCTAAGGTGCATTCAAGTGGGTCTGTTGTGTGTTCAAAAGCTGCCTGAAGACAGACCAGTAATGTCATCGGTGGTTCTTATGTTAAGCAATGAGGGAGCAACTTTACCTCAGCCAAAGGAGCCTGGATTCTTTATAGAAAGAGGTTCCTTGGACTTTGATAGCTTAAGAGACCCAGGAAAAAGCAACACAGGAAACACAATTACCATTACCACAGTGCAAGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

115

Amino Acids

12.93

Weight (kDa)

4.86

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 70 - 115 1.2e-11 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 186
AflII CTTAAG 1 cut(s) 283
AgsI TTSAA 3 cut(s) 116, 134, 155
AjnI CCWGG 4 cut(s) 36, 90, 241, 292
AluBI AGCT 4 cut(s) 76, 160, 282, 341
AluI AGCT 4 cut(s) 76, 160, 282, 341
Alw26I GTCTC 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 160
BbsI GAAGAC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 147
BciT130I CCWGG 4 cut(s) 38, 92, 243, 294
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 283
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
Bme1390I CCNGG 4 cut(s) 38, 92, 243, 294
BmiI GGNNCC 2 cut(s) 240, 265
BmrFI CCNGG 4 cut(s) 38, 92, 243, 294
BpiI GAAGAC 1 cut(s) 174
BpmI CTGGAG 2 cut(s) 20, 113
Bpu10I CCTNAGC 2 cut(s) 122, 228
BsaI GGTCTC 1 cut(s) 282
BsaJI CCNNGG 2 cut(s) 267, 292
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 214
BseBI CCWGG 4 cut(s) 38, 92, 243, 294
BseDI CCNNGG 2 cut(s) 267, 292
BseGI GGATG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 282
BsmI GAATGC 1 cut(s) 129
Bso31I GGTCTC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 2 cut(s) 240, 265
BspTI CTTAAG 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 282
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 267, 292
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 4 cut(s) 38, 92, 243, 294
Bst4CI ACNGT 1 cut(s) 334
BstAFI CTTAAG 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 122, 228
BstF5I GGATG 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 4 cut(s) 38, 92, 243, 294
BstSCI CCNGG 4 cut(s) 36, 90, 241, 292
BstV1I GCAGC 1 cut(s) 147
BstV2I GAAGAC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 339
CviAII CATG 1 cut(s) 42
CviJI RGCY 6 cut(s) 76, 160, 232, 241, 282, 341
CviKI_1 RGCY 6 cut(s) 76, 160, 232, 241, 282, 341
DdeI CTNAG 2 cut(s) 122, 228
Eco130I CCWWGG 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 4 cut(s) 36, 90, 241, 292
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 1 cut(s) 45
FaiI YATR 8 cut(s) 12, 18, 43, 88, 103, 105, 200, 254
FatI CATG 1 cut(s) 41
FauNDI CATATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 161
GsuI CTGGAG 2 cut(s) 20, 113
Hin1II CATG 1 cut(s) 45
HinfI GANTC 2 cut(s) 98, 246
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4V TGCA 2 cut(s) 129, 337
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 2 cut(s) 122, 228
Hsp92II CATG 1 cut(s) 45
LmnI GCTCC 3 cut(s) 73, 215, 238
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 1 cut(s) 342
MboII GAAGA 1 cut(s) 179
MluCI AATT 3 cut(s) 7, 116, 318
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 88, 205, 237, 254
MseI TTAA 2 cut(s) 203, 284
MslI CAYNNNNRTG 1 cut(s) 134
MspCI CTTAAG 1 cut(s) 283
MspR9I CCNGG 4 cut(s) 38, 92, 243, 294
Mva1269I GAATGC 1 cut(s) 129
MvaI CCWGG 4 cut(s) 38, 92, 243, 294
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeI CATATG 1 cut(s) 103
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 2 cut(s) 240, 265
PctI GAATGC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Psp6I CCWGG 4 cut(s) 36, 90, 241, 292
PspGI CCWGG 4 cut(s) 36, 90, 241, 292
PspN4I GGNNCC 2 cut(s) 240, 265
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 203, 284
SatI GCNGC 1 cut(s) 161
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 4 cut(s) 38, 92, 243, 294
SetI ASST 7 cut(s) 78, 128, 162, 229, 265, 284, 343
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 3 cut(s) 7, 116, 318
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 4 cut(s) 36, 90, 241, 292
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 334
TasI AATT 3 cut(s) 7, 116, 318
TfiI GAWTC 1 cut(s) 246
Tru1I TTAA 2 cut(s) 203, 284
Tru9I TTAA 2 cut(s) 203, 284
TscAI CASTG 1 cut(s) 339
TseI GCWGC 1 cut(s) 160
TspRI CASTG 1 cut(s) 339
Vha464I CTTAAG 1 cut(s) 283
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.