FvH4_3g15730

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000201
Physical Location & Seq
Forward (+)
9896985 .. 9898971
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15730.t1

Sequence Viewer

Length: 636 bp
ATGTCTCCTCATCAGCCTGGTCGCATTACAGTTCTTTATCCGGGAGATGAAATTCCAAAGTGGCTAAGTGAGAATTCCTCCTTCTACTTGAAAACCCATCACAAAATTAACAATGGTCAATTAGACTTTTTTGACTCAGTCGTGCTCATCGCAGTTGCAACTTCCGAAGTAGATCATACAAGTACATTTCAATCCATTGCAGACAGCGAGACCATAGGTACAACTGGTGGAACCTTTGAGCTTGGATTCTTCAGTCCCGGTTCTTCCACTACGCGATATATGGGATATCAGTCACACCACCATTGTGTGGGTTGCCAACAGAGAATACAGCTTTGGTGTTTTGATGCTGGAGAAGCGGAGATGATAAGTGGGAAGAGAAACAGAGGATTCCTTCATCCAGGCCACAAGCTCAACCTGCTTGGACATGCATGGAACTTACACATAGAAGTCAGGTCCATTGAATTGCCTGCTACAACAATAGGGGACTCCATTAATCTACAAGAAGTTCTTCGAACGATCCATGTGGCTCTTTTATGTGTTCAGCAAAATCCACAAGACAGGCCAAGCATGTCAGCTGCAGTACTAATGTTGAGTTGTGAAGGTGTGTTGCCTGTACCTGAGAAACCCAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

212

Amino Acids

23.32

Weight (kDa)

6.02

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 423
AccB7I CCANNNNNTGG 1 cut(s) 307
AccII CGCG 1 cut(s) 274
AciI CCGC 1 cut(s) 356
AclWI GGATC 1 cut(s) 511
AcsI RAATTY 2 cut(s) 51, 73
AcuI CTGAAG 1 cut(s) 235
AfaI GTAC 4 cut(s) 184, 220, 582, 615
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 3 cut(s) 91, 191, 461
AjnI CCWGG 2 cut(s) 16, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AleI CACNNNNGTG 1 cut(s) 303
AluBI AGCT 4 cut(s) 241, 331, 409, 575
AluI AGCT 4 cut(s) 241, 331, 409, 575
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 9, 203
AlwI GGATC 1 cut(s) 511
AoxI GGCC 2 cut(s) 400, 560
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 2 cut(s) 51, 73
AseI ATTAAT 1 cut(s) 492
Asp700I GAANNNNTTC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 453
AsuC2I CCSGG 2 cut(s) 42, 258
AsuII TTCGAA 1 cut(s) 511
AvaII GGWCC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 562
BccI CCATC 1 cut(s) 105
BciT130I CCWGG 2 cut(s) 18, 399
BcnI CCSGG 2 cut(s) 42, 258
BcoDI GTCTC 2 cut(s) 9, 203
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 423
BisI GCNGC 1 cut(s) 576
BlsI GCNGC 1 cut(s) 577
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 4 cut(s) 18, 42, 258, 399
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 4 cut(s) 18, 42, 258, 399
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 621
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpmI CTGGAG 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 511
BpuMI CCSGG 2 cut(s) 42, 258
BsaI GGTCTC 1 cut(s) 203
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 229, 627
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 18, 399
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 150, 609
BseNI ACTGG 2 cut(s) 229, 627
BseXI GCAGC 1 cut(s) 562
Bsh1236I CGCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 402, 562
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 2 cut(s) 41, 258
BslFI GGGAC 2 cut(s) 240, 497
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 2 cut(s) 9, 203
BsmFI GGGAC 2 cut(s) 240, 497
BsnI GGCC 2 cut(s) 402, 562
Bso31I GGTCTC 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 172, 516
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 402, 562
BspCNI CTCAG 2 cut(s) 149, 610
BspFNI CGCG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 232
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 1 cut(s) 511
BspT104I TTCGAA 1 cut(s) 511
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 229, 627
BssMI GATC 2 cut(s) 172, 516
Bst2UI CCWGG 2 cut(s) 18, 399
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 511
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 3 cut(s) 65, 136, 618
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 274
BstKTI GATC 2 cut(s) 175, 519
BstMAI GTCTC 2 cut(s) 9, 203
BstMBI GATC 2 cut(s) 172, 516
BstMWI GCNNNNNNNGC 2 cut(s) 353, 415
BstNI CCWGG 2 cut(s) 18, 399
BstNSI RCATGY 2 cut(s) 428, 571
BstSCI CCNGG 4 cut(s) 16, 40, 256, 397
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 562
BsuRI GGCC 2 cut(s) 402, 562
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 1 cut(s) 394
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 4 cut(s) 183, 219, 581, 614
CviAII CATG 4 cut(s) 425, 429, 521, 568
CviJI RGCY 9 cut(s) 16, 64, 241, 331, 402, 409, 527, 562, 575
CviKI_1 RGCY 9 cut(s) 16, 64, 241, 331, 402, 409, 527, 562, 575
CviQI GTAC 4 cut(s) 183, 219, 581, 614
DdeI CTNAG 3 cut(s) 65, 136, 618
DpnI GATC 2 cut(s) 174, 518
DpnII GATC 2 cut(s) 172, 516
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco31I GGTCTC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 2 cut(s) 16, 397
EcoRV GATATC 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 430
FaeI CATG 4 cut(s) 428, 432, 524, 571
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FaqI GGGAC 2 cut(s) 240, 497
FatI CATG 4 cut(s) 424, 428, 520, 567
Fnu4HI GCNGC 1 cut(s) 576
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 1 cut(s) 576
GluI GCNGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 402, 562
HapII CCGG 2 cut(s) 41, 258
Hin1II CATG 4 cut(s) 428, 432, 524, 571
HinfI GANTC 4 cut(s) 134, 246, 387, 485
HpaII CCGG 2 cut(s) 41, 258
Hpy188I TCNGA 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 91, 401, 593
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 4 cut(s) 158, 200, 428, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 415
HpyF3I CTNAG 3 cut(s) 65, 136, 618
Hsp92II CATG 4 cut(s) 428, 432, 524, 571
Kzo9I GATC 2 cut(s) 172, 516
Lsp1109I GCAGC 1 cut(s) 562
LweI GCATC 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 291
MalI GATC 2 cut(s) 174, 518
MboI GATC 2 cut(s) 172, 516
MboII GAAGA 4 cut(s) 241, 255, 385, 500
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 5 cut(s) 51, 73, 105, 119, 461
MlyI GAGTC 2 cut(s) 128, 479
MnlI CCTC 3 cut(s) 18, 88, 377
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 2 cut(s) 108, 492
MslI CAYNNNNRTG 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 2 cut(s) 41, 258
MspR9I CCNGG 4 cut(s) 18, 42, 258, 399
MvaI CCWGG 2 cut(s) 18, 399
MvnI CGCG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 353, 415
NciI CCSGG 2 cut(s) 42, 258
NdeII GATC 2 cut(s) 172, 516
NlaIII CATG 4 cut(s) 428, 432, 524, 571
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 291
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 2 cut(s) 428, 571
NspV TTCGAA 1 cut(s) 511
OliI CACNNNNGTG 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 2 cut(s) 246, 387
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 40
PkrI GCNGC 1 cut(s) 577
PleI GAGTC 2 cut(s) 128, 479
PpsI GAGTC 2 cut(s) 128, 479
PshBI ATTAAT 1 cut(s) 492
PsiI TTATAA 1 cut(s) 634
Psp6I CCWGG 2 cut(s) 16, 397
PspGI CCWGG 2 cut(s) 16, 397
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 453
PstI CTGCAG 1 cut(s) 580
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 4 cut(s) 184, 220, 582, 615
RsaNI GTAC 4 cut(s) 183, 219, 581, 614
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 2 cut(s) 108, 492
SatI GCNGC 1 cut(s) 576
Sau3AI GATC 2 cut(s) 172, 516
Sau96I GGNCC 1 cut(s) 453
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 2 cut(s) 128, 479
ScrFI CCNGG 4 cut(s) 18, 42, 258, 399
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 511
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 5 cut(s) 51, 73, 105, 119, 461
SsiI CCGC 1 cut(s) 356
StyD4I CCNGG 4 cut(s) 16, 40, 256, 397
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 1 cut(s) 511
TasI AATT 5 cut(s) 51, 73, 105, 119, 461
TatI WGTACW 2 cut(s) 182, 580
TfiI GAWTC 2 cut(s) 246, 387
Tru1I TTAA 2 cut(s) 108, 492
Tru9I TTAA 2 cut(s) 108, 492
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 2 cut(s) 63, 383
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 453
VspI ATTAAT 1 cut(s) 492
XapI RAATTY 2 cut(s) 51, 73
XceI RCATGY 2 cut(s) 428, 571
XmnI GAANNNNTTC 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.