Rw5G016880

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
21540730 .. 21541668
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G016880.1

Sequence Viewer

Length: 681 bp
ATGATGCTCATCTACGAATGCATGCCAAACAAAAGCTTGGACTTCTTCATTTTTGATCAAAGAAAAAGCATGCTACTAGATTGGCCTAAGCACTTTGACATCGTCAATGGTATTGCTCGACTGAGAGTAATTCATAGAGATCTCAAAGCAGGCAATATTTTATTAGACAATGAATTTAACCCCATGATCTCAGACTTTGGTCTAGCTAGAATGGTTGGAACCTATGGTTACATGTCCCCAGAATATGCAAGTGACGGGTTCTACTCTACCAAATCCGACGTCGTTAGCTTTGGCGTTTCGGTGTTGGAGATAATAAGTGGGAAGAGAAATAGAGGATTCTCTCATCCAGACCACGACCTCAACCTTCTTGGACATGCATGGAATCTATACACAGAAGGCAGGTCCATAGAACTTGATACATCAGTAGGGGACTCCACTAATCCATCCGAGGAAGTTCTGCGCTCGATTCATGTGGGTCTTTTATGTGTGCAGAAAGATCCAGAAGATAGGCCAAGCATGTCAGACGTTGTTCTAATGTTGAGTGGTGAAGGTGCATTGCCTCAACCTGAAAAACCTGGGTTTTATAGCAAAAGTAGTGATAGGTCTGAAAATCAAGTCGATCTTTTATCTCGAACATGCTCGGCTAATGAAGTTAGTTTTACGCTACTTGAGGCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

226

Amino Acids

25.38

Weight (kDa)

5.03

Isoelectric Point (pI)

47.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 178 2.3e-17 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 177 4.2e-17 Protein kinase domain
DUF3403 PF11883 183 - 226 9.7e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 390
AclWI GGATC 1 cut(s) 491
AcsI RAATTY 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 231
AjnI CCWGG 1 cut(s) 574
AluBI AGCT 3 cut(s) 36, 206, 288
AluI AGCT 3 cut(s) 36, 206, 288
AlwI GGATC 1 cut(s) 491
AoxI GGCC 2 cut(s) 83, 509
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 402
AsuHPI GGTGA 1 cut(s) 557
AvaII GGWCC 1 cut(s) 402
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 576
BclI TGATCA 1 cut(s) 55
BfaI CTAG 4 cut(s) 77, 203, 207, 675
BfuAI ACCTGC 1 cut(s) 390
BglII AGATCT 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 576
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 402
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 576
BoxI GACNNNNGTC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 447, 575
Bse3DI GCAATG 1 cut(s) 554
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 576
BseDI CCNNGG 2 cut(s) 447, 575
BseGI GGATG 2 cut(s) 343, 443
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 1 cut(s) 554
BseMII CTCAG 2 cut(s) 113, 204
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 2 cut(s) 85, 511
BslFI GGGAC 2 cut(s) 220, 443
BsmFI GGGAC 2 cut(s) 220, 443
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 2 cut(s) 85, 511
Bsp143I GATC 5 cut(s) 55, 139, 186, 496, 619
BspANI GGCC 2 cut(s) 85, 511
BspCNI CTCAG 2 cut(s) 114, 203
BspLI GGNNCC 1 cut(s) 220
BspMI ACCTGC 1 cut(s) 390
BspPI GGATC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 554
BssECI CCNNGG 2 cut(s) 447, 575
BssMI GATC 5 cut(s) 55, 139, 186, 496, 619
BssNI GRCGYC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 576
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 23, 71, 151
BstDEI CTNAG 3 cut(s) 87, 122, 190
BstF5I GGATG 2 cut(s) 343, 443
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 5 cut(s) 58, 142, 189, 499, 622
BstMBI GATC 5 cut(s) 55, 139, 186, 496, 619
BstNI CCWGG 1 cut(s) 576
BstNSI RCATGY 6 cut(s) 25, 73, 235, 377, 520, 639
BstPAI GACNNNNGTC 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 574
BstX2I RGATCY 2 cut(s) 139, 496
BstYI RGATCY 2 cut(s) 139, 496
BsuRI GGCC 2 cut(s) 85, 511
BtsCI GGATG 2 cut(s) 343, 443
BveI ACCTGC 1 cut(s) 390
Cac8I GCNNGC 3 cut(s) 23, 71, 151
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 402
CviAII CATG 9 cut(s) 22, 70, 184, 232, 374, 378, 470, 517, 636
CviJI RGCY 7 cut(s) 36, 85, 206, 288, 511, 644, 674
CviKI_1 RGCY 7 cut(s) 36, 85, 206, 288, 511, 644, 674
DdeI CTNAG 3 cut(s) 87, 122, 190
DpnI GATC 5 cut(s) 57, 141, 188, 498, 621
DpnII GATC 5 cut(s) 55, 139, 186, 496, 619
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 574
EcoT22I ATGCAT 2 cut(s) 23, 379
FaeI CATG 9 cut(s) 25, 73, 187, 235, 377, 381, 473, 520, 639
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 2 cut(s) 220, 443
FatI CATG 9 cut(s) 21, 69, 183, 231, 373, 377, 469, 516, 635
FbaI TGATCA 1 cut(s) 55
FokI GGATG 2 cut(s) 330, 430
FspBI CTAG 4 cut(s) 77, 203, 207, 675
GlaI GCGC 1 cut(s) 461
HaeIII GGCC 2 cut(s) 85, 511
HhaI GCGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 9 cut(s) 25, 73, 187, 235, 377, 381, 473, 520, 639
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 4 cut(s) 336, 382, 431, 466
HphI GGTGA 1 cut(s) 557
Hpy188I TCNGA 5 cut(s) 193, 277, 448, 523, 607
Hpy188III TCNNGA 3 cut(s) 347, 500, 630
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 3 cut(s) 374, 389, 542
HpyCH4IV ACGT 2 cut(s) 279, 525
HpyCH4V TGCA 5 cut(s) 21, 248, 377, 490, 554
HpyF3I CTNAG 3 cut(s) 87, 122, 190
HpySE526I ACGT 2 cut(s) 279, 525
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 9 cut(s) 25, 73, 187, 235, 377, 381, 473, 520, 639
HspAI GCGC 1 cut(s) 460
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 5 cut(s) 55, 139, 186, 496, 619
LpnPI CCDG 8 cut(s) 135, 252, 360, 385, 513, 561, 579, 588
MaeI CTAG 4 cut(s) 77, 203, 207, 675
MaeII ACGT 2 cut(s) 279, 525
MaeIII GTNAC 2 cut(s) 227, 251
MalI GATC 5 cut(s) 57, 141, 188, 498, 621
MboI GATC 5 cut(s) 55, 139, 186, 496, 619
MboII GAAGA 3 cut(s) 37, 334, 515
MflI RGATCY 2 cut(s) 139, 496
MluCI AATT 2 cut(s) 129, 173
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 3 cut(s) 196, 285, 300
MnlI CCTC 5 cut(s) 326, 368, 442, 570, 664
Mph1103I ATGCAT 2 cut(s) 23, 379
MseI TTAA 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 576
NdeII GATC 5 cut(s) 55, 139, 186, 496, 619
NlaIII CATG 9 cut(s) 25, 73, 187, 235, 377, 381, 473, 520, 639
NlaIV GGNNCC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 620
NmuCI GTSAC 1 cut(s) 251
NsiI ATGCAT 2 cut(s) 23, 379
NspI RCATGY 6 cut(s) 25, 73, 235, 377, 520, 639
PaeI GCATGC 2 cut(s) 25, 73
PciI ACATGT 1 cut(s) 231
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 3 cut(s) 336, 382, 466
PflFI GACNNNGTC 1 cut(s) 101
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PscI ACATGT 1 cut(s) 231
PshAI GACNNNNGTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 574
PspGI CCWGG 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 402
PsuI RGATCY 2 cut(s) 139, 496
PsyI GACNNNGTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 5 cut(s) 55, 139, 186, 496, 619
Sau96I GGNCC 1 cut(s) 402
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 576
SinI GGWCC 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SphI GCATGC 2 cut(s) 25, 73
Sse9I AATT 2 cut(s) 129, 173
SspI AATATT 1 cut(s) 157
SspMI CTAG 4 cut(s) 77, 203, 207, 675
StyD4I CCNGG 1 cut(s) 574
TaiI ACGT 2 cut(s) 282, 528
TaqI TCGA 4 cut(s) 118, 464, 618, 631
TasI AATT 2 cut(s) 129, 173
TfiI GAWTC 3 cut(s) 336, 382, 466
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 5 cut(s) 37, 122, 186, 458, 663
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 1 cut(s) 173
XceI RCATGY 6 cut(s) 25, 73, 235, 377, 520, 639
XspI CTAG 4 cut(s) 77, 203, 207, 675
ZraI GACGTC 1 cut(s) 280
Zsp2I ATGCAT 2 cut(s) 23, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.