Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

91638818 .. 91653510

Gene Structure 14693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTACTTCGAAAAGTCTACTGCAGATCTTGATGATGAGAGTACAATAAACTCATCAGAATTACCATTTTTTGGAATAAGCATCATATCTGCAGCCACAAACAATTTCTCAGTGTCTAACAAGCTTGGAGCAGGCGGTTTTGGCTCCGTTTATAAGGGCGTGCTTTCTAATGGGAAGGAAGTAGCAGTGAAAAGATTGTCTAAGCATTCTGGCCAAGGAATTGAAGAGTTTAAGAATGAAGTTATGCTGATTGCAAAACTACAACACAGGAACCTTGTGAGGATTTTAGGCTGTTGTGTTCAAGATGAAGAGAAGATGCTAATCTATGAATATGTGCCGAACAAAAGTTTGGACTACTTCATTTTTAATGAAACCAACAGAGCACTTTTAGATTGGACGAGACGGTTTGAGATAATCTGTGGGATTGCTAGAGGGATACTATATCTTCATCAAGATTCAAGATTAAGAATCATCCATAGAGACTTAAAAGCCAGCAATGTTCTACTAGATGCTTCTATGAACCCAAAAATTGCAGATTTTGGTTTGGCTAGAATCTTTAGAGGAGATCAGAATGAATCAAAAACAAATCGTGTGGTTGGGACATATGGTTATATGTCGCCAGAGTATGCAATGGAAGGATTGTTTTCAGTAAAATCAGATGTATATAGCTTCGGCATTTTACTACTAGAAATCATTAGTGGTAGAAAGAACACTGGTTATTATGATGAAACATACCCCGACTCCAATTTAATTGGACATGTTTGGAATTTGTGGAGGGAAGATAATGCCTTGGAAATAGTTGATTCATCTCTGGGAGACTCATTGCTGTTTGATGAAGTTCTGAGATGTATACAAATTGCGCTCTTGTGTGTGCAAGATTTTCCCACCGAGCGACCAACCATGTCAGCAGTTTTTGTAATGTTAAGTAATGATGCAGCTCTTCCTCCGCCGGGAAAACCTGCATTTCTAGTGAAGAAAGCTAGTACCAGTGAAGAAAATTCTATCAATTATGTGACATGTACTATTGTAAGAGCTCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

346

Amino Acids

38.84

Weight (kDa)

5.54

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	37 - 243	5.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	38 - 303	1.8e-49	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	967
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccI	GTMKAC	2 cut(s)	17, 850
AciI	CCGC	2 cut(s)	135, 947
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	766, 997
AfaI	GTAC	4 cut(s)	5, 43, 985, 1021
AfiI	CCNNNNNNNGG	2 cut(s)	71, 950
AflIII	ACRYGT	2 cut(s)	757, 1016
AgsI	TTSAA	3 cut(s)	224, 302, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AluBI	AGCT	5 cut(s)	124, 669, 938, 980, 1034
AluI	AGCT	5 cut(s)	124, 669, 938, 980, 1034
Alw21I	GWGCWC	2 cut(s)	385, 1036
Alw26I	GTCTC	3 cut(s)	394, 474, 810
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	92, 935
ApoI	RAATTY	2 cut(s)	766, 997
AspLEI	GCGC	1 cut(s)	862
AsuC2I	CCSGG	1 cut(s)	951
AsuII	TTCGAA	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	1036
Bbv12I	GWGCWC	2 cut(s)	385, 1036
BbvI	GCAGC	2 cut(s)	104, 947
BciVI	GTATCC	1 cut(s)	429
BcnI	CCSGG	1 cut(s)	951
BcoDI	GTCTC	3 cut(s)	394, 474, 810
BfaI	CTAG	6 cut(s)	429, 506, 549, 686, 968, 981
BfmI	CTRYAG	2 cut(s)	21, 90
BfuAI	ACCTGC	1 cut(s)	967
BfuI	GTATCC	1 cut(s)	429
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	93, 936
BlsI	GCNGC	2 cut(s)	94, 937
Bme1390I	CCNGG	1 cut(s)	951
BmiI	GGNNCC	2 cut(s)	145, 272
BmrFI	CCNGG	1 cut(s)	951
BmsI	GCATC	4 cut(s)	90, 306, 499, 922
Bpu14I	TTCGAA	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	951
BsaBI	GATNNNNATC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	214, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 950
Bse1I	ACTGG	2 cut(s)	718, 987
Bse3DI	GCAATG	3 cut(s)	502, 636, 821
Bse8I	GATNNNNATC	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	214, 789
BseGI	GGATG	1 cut(s)	471
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	2 cut(s)	71, 950
BseMI	GCAATG	3 cut(s)	502, 636, 821
BseMII	CTCAG	2 cut(s)	123, 833
BseNI	ACTGG	2 cut(s)	718, 987
BseRI	GAGGAG	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	104, 947
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	385, 1036
BsiSI	CCGG	1 cut(s)	950
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	71, 950
BsmAI	GTCTC	3 cut(s)	394, 474, 810
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	213
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	385, 1036
Bsp143I	GATC	2 cut(s)	25, 565
BspACI	CCGC	2 cut(s)	135, 947
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	2 cut(s)	122, 834
BspLI	GGNNCC	2 cut(s)	145, 272
BspMAI	CTGCAG	2 cut(s)	25, 94
BspMI	ACCTGC	1 cut(s)	967
BspQI	GCTCTTC	1 cut(s)	945
BspT104I	TTCGAA	1 cut(s)	9
BsrDI	GCAATG	3 cut(s)	502, 636, 821
BsrI	ACTGG	2 cut(s)	718, 987
BssECI	CCNNGG	2 cut(s)	214, 789
BssMI	GATC	2 cut(s)	25, 565
BssNAI	GTATAC	1 cut(s)	851
BssT1I	CCWWGG	2 cut(s)	214, 789
Bst1107I	GTATAC	1 cut(s)	851
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	3 cut(s)	219, 303, 945
BstBI	TTCGAA	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	133, 161, 493
BstDEI	CTNAG	3 cut(s)	109, 201, 842
BstF5I	GGATG	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	862
BstKTI	GATC	2 cut(s)	28, 568
BstMAI	GTCTC	3 cut(s)	394, 474, 810
BstMBI	GATC	2 cut(s)	25, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	141
BstNSI	RCATGY	2 cut(s)	761, 1020
BstSCI	CCNGG	1 cut(s)	949
BstSFI	CTRYAG	2 cut(s)	21, 90
BstV1I	GCAGC	2 cut(s)	104, 947
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	851
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	4 cut(s)	117, 192, 711, 994
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	3 cut(s)	133, 161, 493
CfoI	GCGC	1 cut(s)	862
Csp6I	GTAC	4 cut(s)	4, 42, 984, 1020
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	3 cut(s)	758, 901, 1017
CviQI	GTAC	4 cut(s)	4, 42, 984, 1020
DdeI	CTNAG	3 cut(s)	109, 201, 842
DpnI	GATC	2 cut(s)	27, 567
DpnII	GATC	2 cut(s)	25, 565
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	219, 303, 945
EarI	CTCTTC	3 cut(s)	219, 303, 945
EciI	GGCGGA	1 cut(s)	936
Ecl136II	GAGCTC	1 cut(s)	1034
Eco130I	CCWWGG	2 cut(s)	214, 789
Eco24I	GRGCYC	1 cut(s)	1036
Eco53kI	GAGCTC	1 cut(s)	1034
EcoICRI	GAGCTC	1 cut(s)	1034
EcoT14I	CCWWGG	2 cut(s)	214, 789
EcoT38I	GRGCYC	1 cut(s)	1036
ErhI	CCWWGG	2 cut(s)	214, 789
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	3 cut(s)	761, 904, 1020
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	3 cut(s)	757, 900, 1016
FauNDI	CATATG	1 cut(s)	604
FblI	GTMKAC	2 cut(s)	17, 850
Fnu4HI	GCNGC	2 cut(s)	93, 936
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	1036
Fsp4HI	GCNGC	2 cut(s)	93, 936
FspBI	CTAG	6 cut(s)	429, 506, 549, 686, 968, 981
GlaI	GCGC	1 cut(s)	861
GluI	GCNGC	2 cut(s)	93, 936
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	1 cut(s)	950
HhaI	GCGC	1 cut(s)	862
Hin1II	CATG	3 cut(s)	761, 904, 1020
Hin6I	GCGC	1 cut(s)	860
HinP1I	GCGC	1 cut(s)	860
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	7 cut(s)	455, 468, 552, 575, 740, 803, 818
HpaII	CCGG	1 cut(s)	950
Hpy166II	GTNNAC	2 cut(s)	18, 851
Hpy188I	TCNGA	4 cut(s)	58, 570, 658, 843
Hpy188III	TCNNGA	4 cut(s)	29, 302, 452, 459
Hpy8I	GTNNAC	2 cut(s)	18, 851
HpyAV	CCTTC	2 cut(s)	169, 629
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	8 cut(s)	23, 92, 254, 533, 629, 874, 935, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	141
HpyF3I	CTNAG	3 cut(s)	109, 201, 842
Hsp92II	CATG	3 cut(s)	761, 904, 1020
HspAI	GCGC	1 cut(s)	860
Kzo9I	GATC	2 cut(s)	25, 565
LguI	GCTCTTC	1 cut(s)	945
LmnI	GCTCC	2 cut(s)	128, 149
Lsp1109I	GCAGC	2 cut(s)	104, 947
LweI	GCATC	4 cut(s)	90, 306, 499, 922
MaeI	CTAG	6 cut(s)	429, 506, 549, 686, 968, 981
MaeIII	GTNAC	1 cut(s)	1012
MalI	GATC	2 cut(s)	27, 567
MboI	GATC	2 cut(s)	25, 565
MboII	GAAGA	8 cut(s)	236, 320, 325, 437, 791, 932, 985, 1004
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	385, 1036
MlsI	TGGCCA	1 cut(s)	213
MluNI	TGGCCA	1 cut(s)	213
MlyI	GAGTC	2 cut(s)	734, 812
MnlI	CCTC	5 cut(s)	273, 425, 554, 768, 954
Mox20I	TGGCCA	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	213
MseI	TTAA	6 cut(s)	231, 366, 464, 485, 749, 923
Msp20I	TGGCCA	1 cut(s)	213
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	1 cut(s)	951
Mva1269I	GAATGC	1 cut(s)	205
MwoI	GCNNNNNNNGC	1 cut(s)	141
NciI	CCSGG	1 cut(s)	951
NdeI	CATATG	1 cut(s)	604
NdeII	GATC	2 cut(s)	25, 565
NlaIII	CATG	3 cut(s)	761, 904, 1020
NlaIV	GGNNCC	2 cut(s)	145, 272
NmuCI	GTSAC	1 cut(s)	1012
NspI	RCATGY	2 cut(s)	761, 1020
NspV	TTCGAA	1 cut(s)	9
PciI	ACATGT	2 cut(s)	757, 1016
PciSI	GCTCTTC	1 cut(s)	945
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	5 cut(s)	455, 468, 552, 575, 803
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	94, 937
PleI	GAGTC	2 cut(s)	734, 812
PpsI	GAGTC	2 cut(s)	734, 812
PscI	ACATGT	2 cut(s)	757, 1016
PsiI	TTATAA	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	1036
PspN4I	GGNNCC	2 cut(s)	145, 272
PstI	CTGCAG	2 cut(s)	25, 94
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	4 cut(s)	5, 43, 985, 1021
RsaNI	GTAC	4 cut(s)	4, 42, 984, 1020
SacI	GAGCTC	1 cut(s)	1036
SapI	GCTCTTC	1 cut(s)	945
SaqAI	TTAA	6 cut(s)	231, 366, 464, 485, 749, 923
SatI	GCNGC	2 cut(s)	93, 936
Sau3AI	GATC	2 cut(s)	25, 565
SchI	GAGTC	2 cut(s)	734, 812
ScrFI	CCNGG	1 cut(s)	951
SduI	GDGCHC	2 cut(s)	385, 1036
SetI	ASST	7 cut(s)	126, 276, 671, 940, 961, 982, 1036
SfaNI	GCATC	4 cut(s)	90, 306, 499, 922
SfcI	CTRYAG	2 cut(s)	21, 90
SfuI	TTCGAA	1 cut(s)	9
SsiI	CCGC	2 cut(s)	135, 947
SspMI	CTAG	6 cut(s)	429, 506, 549, 686, 968, 981
SstI	GAGCTC	1 cut(s)	1036
StyD4I	CCNGG	1 cut(s)	949
StyI	CCWWGG	2 cut(s)	214, 789
TaaI	ACNGT	1 cut(s)	405
TaqI	TCGA	1 cut(s)	9
TatI	WGTACW	3 cut(s)	3, 41, 1019
TfiI	GAWTC	5 cut(s)	455, 468, 552, 575, 803
Tru1I	TTAA	6 cut(s)	231, 366, 464, 485, 749, 923
Tru9I	TTAA	6 cut(s)	231, 366, 464, 485, 749, 923
TscAI	CASTG	4 cut(s)	117, 192, 718, 994
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	2 cut(s)	92, 935
Tsp45I	GTSAC	1 cut(s)	1012
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	4 cut(s)	117, 192, 718, 994
Van91I	CCANNNNNTGG	1 cut(s)	71
XapI	RAATTY	2 cut(s)	766, 997
XceI	RCATGY	2 cut(s)	761, 1020
XmiI	GTMKAC	2 cut(s)	17, 850
XspI	CTAG	6 cut(s)	429, 506, 549, 686, 968, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.