Rh5CG283800

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Forward (+)
31058031 .. 31059798
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG283800.1

Sequence Viewer

Length: 867 bp
ATGGGCATTCTTTCATTCATTTTCATTGGAGTTTACTTCTTAAAAATCTCAATTTTAGCTGATTCCACTTCCAGCCATGGAGGATATGAATTGGGTTTCTTGAGTAGACCAAAGGGTGTTCATAGGAGGAGTCTTTTGGCCTCAACTTCTGGAGACTATTGTGACAACAATGACCTTTGTGGCCCCAATGGAATGTGTGTCATCACCAATTCACCGGTTTGTACTTGTTTAAATGGGTTTGAACCCAAGGCACCTGAAAAATATAACTCTGGGGACTATTCAGGTGGTTGTGTCCAGGCTCAACCTTCCAACTGCCAAAATAAGGATGACGGGTTTGAGATATATGCTGGGGTCAAATTGCCAGATACCACAGATTCTCGGGCTAACCAGAGTATGAGTGTCCAGGACTGCAGGGAAAATTGCTTGAACAACTGTACTTGTGTGGCTTATGCAAGCTCCAGTGTCAATGGCTGCACTATCTGGTTTGGTGATTTAAACAACATTAGGAAGCTTTCAGATGGTGGGGAGGATCTGAACGTTCGAATACCTGCTTCAGAATTAAAGAAAAACCACTCACTTAAGACAAAGATAGCGGTGATCGTTCCATCTGTTGTTGCGGTTGTCATTGGGATGCTCTTGGTTGCTTATTGCATTCACAGGAGGAGAACAAAGTTCAAAGAGAAAATGGGAAAGAATGGAATGACGAATCAGAACTATGATGGACAGAACGAAGACATCGAGCTACCAATATTTAGTTTGTCCACAATAGTCACAGCCACTGATAACTTTTCATTCAACATGAAACTTGGAGAAGGTGGCTTTGGGCCTGTATACAAGGTATATTTCCAATATATGAGCATATCAACT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

289

Amino Acids

31.55

Weight (kDa)

6.86

Isoelectric Point (pI)

43.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 47 - 83 2.8e-08 S-locus glycoprotein domain
PAN_2 PF08276 105 - 168 2.9e-17 PAN-like domain
PAN_3 PF08277 123 - 177 2.3e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 2 cut(s) 106, 831
AciI CCGC 2 cut(s) 593, 617
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 537
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 2 cut(s) 223, 436
AfiI CCNNNNNNNGG 1 cut(s) 322
AflII CTTAAG 1 cut(s) 578
AgeI ACCGGT 1 cut(s) 214
AgsI TTSAA 4 cut(s) 242, 427, 676, 796
AjnI CCWGG 2 cut(s) 294, 402
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 4 cut(s) 59, 456, 511, 742
AluI AGCT 4 cut(s) 59, 456, 511, 742
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 537
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 3 cut(s) 138, 181, 824
ApeKI GCWGC 1 cut(s) 471
AsiGI ACCGGT 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 182, 824
AsuHPI GGTGA 4 cut(s) 196, 204, 500, 607
AsuII TTCGAA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 378
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 738
BbvI GCAGC 1 cut(s) 458
BccI CCATC 3 cut(s) 512, 613, 713
BciT130I CCWGG 2 cut(s) 296, 404
BcoDI GTCTC 1 cut(s) 147
BfmI CTRYAG 1 cut(s) 409
BfrI CTTAAG 1 cut(s) 578
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 1 cut(s) 472
BlsI GCNGC 1 cut(s) 473
Bme1390I CCNGG 2 cut(s) 296, 404
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 182, 824
BmiI GGNNCC 2 cut(s) 184, 252
BmrFI CCNGG 2 cut(s) 296, 404
BmsI GCATC 1 cut(s) 621
BpiI GAAGAC 1 cut(s) 738
BpmI CTGGAG 2 cut(s) 171, 442
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 76, 246
BsaWI WCCGGW 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 459
BseBI CCWGG 2 cut(s) 296, 404
BseDI CCNNGG 2 cut(s) 76, 246
BseGI GGATG 2 cut(s) 331, 636
BseLI CCNNNNNNNGG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 142, 676
BseXI GCAGC 1 cut(s) 458
BseYI CCCAGC 1 cut(s) 347
BsgI GTGCAG 1 cut(s) 457
BshFI GGCC 3 cut(s) 140, 183, 826
BshNI GGYRCC 1 cut(s) 250
BshTI ACCGGT 1 cut(s) 214
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 215
BslFI GGGAC 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 287
BsmI GAATGC 2 cut(s) 6, 651
BsnI GGCC 3 cut(s) 140, 183, 826
BsoBI CYCGRG 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 541
Bsp143I GATC 2 cut(s) 529, 597
Bsp19I CCATGG 1 cut(s) 76
BspACI CCGC 2 cut(s) 593, 617
BspANI GGCC 3 cut(s) 140, 183, 826
BspLI GGNNCC 2 cut(s) 184, 252
BspMAI CTGCAG 1 cut(s) 413
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 1 cut(s) 537
BspT104I TTCGAA 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 250
BspTI CTTAAG 1 cut(s) 578
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 459
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 76, 246
BssMI GATC 2 cut(s) 529, 597
BssNAI GTATAC 1 cut(s) 832
BssT1I CCWWGG 2 cut(s) 76, 246
Bst1107I GTATAC 1 cut(s) 832
Bst2UI CCWGG 2 cut(s) 296, 404
Bst4CI ACNGT 1 cut(s) 434
BstAFI CTTAAG 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 454
BstDSI CCRYGG 1 cut(s) 76
BstF5I GGATG 2 cut(s) 331, 636
BstKTI GATC 2 cut(s) 532, 600
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 2 cut(s) 529, 597
BstNI CCWGG 2 cut(s) 296, 404
BstSCI CCNGG 2 cut(s) 294, 402
BstSFI CTRYAG 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 458
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BstZ17I GTATAC 1 cut(s) 832
BsuRI GGCC 3 cut(s) 140, 183, 826
BtgI CCRYGG 1 cut(s) 76
BtsCI GGATG 2 cut(s) 331, 636
BtsIMutI CAGTG 2 cut(s) 466, 777
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 779
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 182, 824
Csp6I GTAC 2 cut(s) 222, 435
CspAI ACCGGT 1 cut(s) 214
CviAII CATG 2 cut(s) 77, 799
CviQI GTAC 2 cut(s) 222, 435
DpnI GATC 2 cut(s) 531, 599
DpnII GATC 2 cut(s) 529, 597
DraI TTTAAA 2 cut(s) 231, 495
Eco130I CCWWGG 2 cut(s) 76, 246
Eco57I CTGAAG 1 cut(s) 537
Eco88I CYCGRG 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 294, 402
EcoT14I CCWWGG 2 cut(s) 76, 246
ErhI CCWWGG 2 cut(s) 76, 246
FaeI CATG 2 cut(s) 80, 802
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 76, 798
FblI GTMKAC 2 cut(s) 106, 831
Fnu4HI GCNGC 1 cut(s) 472
FokI GGATG 2 cut(s) 338, 643
Fsp4HI GCNGC 1 cut(s) 472
GluI GCNGC 1 cut(s) 472
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 2 cut(s) 171, 442
HaeIII GGCC 3 cut(s) 140, 183, 826
HapII CCGG 1 cut(s) 215
Hin1II CATG 2 cut(s) 80, 802
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 4 cut(s) 62, 130, 374, 706
HpaII CCGG 1 cut(s) 215
HphI GGTGA 4 cut(s) 196, 204, 500, 607
Hpy166II GTNNAC 4 cut(s) 34, 107, 762, 832
Hpy188I TCNGA 4 cut(s) 517, 534, 556, 711
Hpy188III TCNNGA 2 cut(s) 100, 150
Hpy8I GTNNAC 4 cut(s) 34, 107, 762, 832
HpyAV CCTTC 2 cut(s) 315, 806
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 4 cut(s) 411, 452, 474, 651
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 2 cut(s) 80, 802
Kzo9I GATC 2 cut(s) 529, 597
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 1 cut(s) 458
LweI GCATC 1 cut(s) 621
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 161, 769
MalI GATC 2 cut(s) 531, 599
MboI GATC 2 cut(s) 529, 597
MboII GAAGA 1 cut(s) 743
MflI RGATCY 1 cut(s) 529
MluCI AATT 6 cut(s) 51, 89, 208, 356, 418, 557
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 5 cut(s) 74, 120, 151, 520, 654
MseI TTAA 5 cut(s) 41, 230, 494, 560, 579
MslI CAYNNNNRTG 1 cut(s) 629
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 2 cut(s) 296, 404
Mva1269I GAATGC 2 cut(s) 6, 651
MvaI CCWGG 2 cut(s) 296, 404
NcoI CCATGG 1 cut(s) 76
NdeII GATC 2 cut(s) 529, 597
NlaIII CATG 2 cut(s) 80, 802
NlaIV GGNNCC 2 cut(s) 184, 252
NmuCI GTSAC 2 cut(s) 161, 769
NspV TTCGAA 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 735
PctI GAATGC 2 cut(s) 6, 651
PfeI GAWTC 3 cut(s) 62, 374, 706
PfoI TCCNGGA 1 cut(s) 402
PinAI ACCGGT 1 cut(s) 214
PkrI GCNGC 1 cut(s) 473
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp1406I AACGTT 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 294, 402
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 2 cut(s) 294, 402
PspN4I GGNNCC 2 cut(s) 184, 252
PspPI GGNCC 2 cut(s) 182, 824
PstI CTGCAG 1 cut(s) 413
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 2 cut(s) 223, 436
RsaNI GTAC 2 cut(s) 222, 435
RseI CAYNNNNRTG 1 cut(s) 629
SaqAI TTAA 5 cut(s) 41, 230, 494, 560, 579
SatI GCNGC 1 cut(s) 472
Sau3AI GATC 2 cut(s) 529, 597
Sau96I GGNCC 2 cut(s) 182, 824
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 296, 404
SfaNI GCATC 1 cut(s) 621
SfcI CTRYAG 1 cut(s) 409
SfuI TTCGAA 1 cut(s) 541
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 2 cut(s) 100, 578
SmoI CTYRAG 2 cut(s) 100, 578
Sse9I AATT 6 cut(s) 51, 89, 208, 356, 418, 557
SsiI CCGC 2 cut(s) 593, 617
SspI AATATT 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 294, 402
StyI CCWWGG 2 cut(s) 76, 246
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 541, 738
TasI AATT 6 cut(s) 51, 89, 208, 356, 418, 557
TatI WGTACW 2 cut(s) 221, 434
TfiI GAWTC 3 cut(s) 62, 374, 706
Tru1I TTAA 5 cut(s) 41, 230, 494, 560, 579
Tru9I TTAA 5 cut(s) 41, 230, 494, 560, 579
TscAI CASTG 2 cut(s) 466, 784
TseFI GTSAC 2 cut(s) 161, 769
TseI GCWGC 1 cut(s) 471
Tsp45I GTSAC 2 cut(s) 161, 769
TspDTI ATGAA 6 cut(s) 7, 13, 102, 110, 780, 815
TspRI CASTG 2 cut(s) 466, 784
Vha464I CTTAAG 1 cut(s) 578
XmiI GTMKAC 2 cut(s) 106, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.