Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015364.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

1566 .. 2083

Gene Structure 518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtcaccagagtatgcaatggaaggattgttttcagtaaagtcagatgtatatagctttggcattttactactagaaatcattagtggtagaaagaacactggttattatgatgaaacatatcccgactccaatttagttggacatgtttggaatttgtggagggaagataatgccttggaaatagttgattcatctctgggagactcattgcagtttgatgaagttctgagatgtatacaaattgcactcttgtgtgtgcaagattttcccaccgagcgaccaaccatgtcagcagttcttgtaatgttaagtaatgatgcagctcttccttcgccaggaaaacctgcatttctagtgaagaaagctggtaccactgaagaaaattctatcaattatgtgacatgtactattgtaagagctcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

142

Amino Acids

15.79

Weight (kDa)

4.51

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	371
AccI	GTMKAC	1 cut(s)	238
AcsI	RAATTY	2 cut(s)	154, 385
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	2 cut(s)	373, 409
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflIII	ACRYGT	2 cut(s)	145, 404
AjnI	CCWGG	1 cut(s)	337
AleI	CACNNNNGTG	1 cut(s)	253
AluBI	AGCT	4 cut(s)	57, 326, 368, 422
AluI	AGCT	4 cut(s)	57, 326, 368, 422
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	198
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	154, 385
Asp718I	GGTACC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	74, 356
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	2 cut(s)	24, 209
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	2 cut(s)	24, 209
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	424
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	424
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	373
BspMI	ACCTGC	1 cut(s)	355
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	2 cut(s)	24, 209
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	177
BssNAI	GTATAC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	177
Bst1107I	GTATAC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	198
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	149, 408
BstSCI	CCNGG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	335
BstZ17I	GTATAC	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	99, 375
BveI	ACCTGC	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	372, 408
CviAII	CATG	3 cut(s)	146, 289, 405
CviJI	RGCY	4 cut(s)	57, 326, 368, 422
CviKI_1	RGCY	4 cut(s)	57, 326, 368, 422
CviQI	GTAC	2 cut(s)	372, 408
DdeI	CTNAG	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	399
EcoICRI	GAGCTC	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	3 cut(s)	149, 292, 408
FatI	CATG	3 cut(s)	145, 288, 404
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	324
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	2 cut(s)	74, 356
GluI	GCNGC	1 cut(s)	324
Hin1II	CATG	3 cut(s)	149, 292, 408
HinfI	GANTC	3 cut(s)	128, 191, 206
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	46, 231
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	17, 342
HpyCH4V	TGCA	6 cut(s)	17, 214, 248, 262, 323, 350
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	149, 292, 408
KpnI	GGTACC	1 cut(s)	375
LguI	GCTCTTC	1 cut(s)	333
LpnPI	CCDG	7 cut(s)	21, 87, 185, 324, 351, 354, 360
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	74, 356
MaeIII	GTNAC	2 cut(s)	3, 400
MboII	GAAGA	4 cut(s)	179, 320, 373, 392
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	5 cut(s)	133, 154, 243, 385, 394
MlyI	GAGTC	2 cut(s)	122, 200
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	253
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NlaIII	CATG	3 cut(s)	149, 292, 408
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	2 cut(s)	3, 400
NspI	RCATGY	2 cut(s)	149, 408
OliI	CACNNNNGTG	1 cut(s)	253
PciI	ACATGT	2 cut(s)	145, 404
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	2 cut(s)	122, 200
PpsI	GAGTC	2 cut(s)	122, 200
PscI	ACATGT	2 cut(s)	145, 404
Psp124BI	GAGCTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	373, 409
RsaNI	GTAC	2 cut(s)	372, 408
RseI	CAYNNNNRTG	1 cut(s)	253
SacI	GAGCTC	1 cut(s)	424
SapI	GCTCTTC	1 cut(s)	333
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	1 cut(s)	324
SchI	GAGTC	2 cut(s)	122, 200
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	5 cut(s)	59, 328, 349, 370, 424
SfaNI	GCATC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	253
Sse9I	AATT	5 cut(s)	133, 154, 243, 385, 394
SspMI	CTAG	2 cut(s)	74, 356
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	177
TasI	AATT	5 cut(s)	133, 154, 243, 385, 394
TatI	WGTACW	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	2 cut(s)	106, 382
TseFI	GTSAC	2 cut(s)	3, 400
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	2 cut(s)	3, 400
TspDTI	ATGAA	3 cut(s)	129, 183, 237
TspRI	CASTG	2 cut(s)	106, 382
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	154, 385
XceI	RCATGY	2 cut(s)	149, 408
XmiI	GTMKAC	1 cut(s)	238
XspI	CTAG	2 cut(s)	74, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.