Rorug05G0156300

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000201
Physical Location & Seq
Forward (+)
14586333 .. 14587112
780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0156300.1

Sequence Viewer

Length: 780 bp
ATGAGCAAATCGGAGGTGGTGTTCATCTCAACCCCCGGATCAATCGGAAACCTAGTCCCACTGGTCGAGTTCGCTCAGCTTCTAGTCAACCATGACCCTCGATTCCACGCCACCATCCTCACCATCACCATGCCCCAAAGACCCGCCATCAATACTTACATCCAATCTCGCGCCGCCGCGTCAGCCACCAGCATCAACTTCCTCCACCTTCCCATTGTAGACCCACTTGCAGAGGATGAGAACCAGTCCTATCTCGCCTACCTTTCCCTACTCATTGAAAAACACAAGCCCCACGTAAAGCATGCTATAGCTGACCTCATGTCCTCTGCCGAGTCGAACCGAGTTGTTGCGTTTTTCGTGGACATGTTTTGTACGTCCATGATCGACGTTGCCAACGAGCTTGAGATTCCTTGTTGTATGTATTTCGCTTCTCCGGCGACGTTTCTGAGCTTCATGTTTCATATTCCTGTCTTGGACGCCGAAATCTCCGACGACTTTGGCGATTTGGATACTGAGTTGACTATACCGGGTTTTGCTAACTCGGTGCCTCCGCTGGTGTTGCCTACGGCGCTGTTGAGTAAGAAGGGGGATACGTACCCTTGCTATTTATCCCATACGGCAAGGTACAAGGAACCCAAGGGTATTGTTGTCAATACGTTCAAGGAATTGGAGCCACACGCGCTTAGTTCGTTGTCTACGAGTCACGTGCCGCGAGTTCACGCTATTGGGCCGGTTGTTGATCTTAATGGGCCGGCCCAATCAGGATCCCGACCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

259

Amino Acids

28.3

Weight (kDa)

5.47

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AccI GTMKAC 2 cut(s) 219, 695
AccII CGCG 4 cut(s) 171, 179, 680, 712
AciI CCGC 5 cut(s) 144, 174, 177, 551, 710
AclWI GGATC 3 cut(s) 46, 759, 772
AcvI CACGTG 1 cut(s) 706
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 3 cut(s) 373, 596, 626
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 2 cut(s) 278, 661
AhdI GACNNNNNGTC 1 cut(s) 319
AloI GAACNNNNNNTCC 1 cut(s) 37
AluBI AGCT 4 cut(s) 79, 311, 400, 450
AluI AGCT 4 cut(s) 79, 311, 400, 450
AlwI GGATC 3 cut(s) 46, 759, 772
AoxI GGCC 3 cut(s) 728, 749, 753
AspLEI GCGC 3 cut(s) 173, 571, 682
AspS9I GGNCC 3 cut(s) 728, 749, 754
AsuC2I CCSGG 2 cut(s) 36, 528
AsuHPI GGTGA 2 cut(s) 112, 118
BamHI GGATCC 1 cut(s) 764
BanI GGYRCC 1 cut(s) 544
BbrPI CACGTG 1 cut(s) 706
BccI CCATC 3 cut(s) 122, 131, 155
BceAI ACGGC 2 cut(s) 582, 633
BcgI CGANNNNNNTGC 2 cut(s) 688, 722
BciVI GTATCC 2 cut(s) 502, 583
BcnI CCSGG 2 cut(s) 36, 528
BfaI CTAG 2 cut(s) 53, 83
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 572
BfuI GTATCC 2 cut(s) 502, 583
BisI GCNGC 3 cut(s) 174, 177, 710
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 3 cut(s) 175, 178, 711
Bme1390I CCNGG 2 cut(s) 36, 528
BmeRI GACNNNNNGTC 1 cut(s) 319
BmgT120I GGNCC 3 cut(s) 728, 749, 754
BmiI GGNNCC 4 cut(s) 546, 633, 672, 766
BmrFI CCNGG 2 cut(s) 36, 528
BmsI GCATC 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 36, 528
BsaAI YACGTR 3 cut(s) 295, 594, 706
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 2 cut(s) 34, 636
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
Bse118I RCCGGY 2 cut(s) 730, 751
Bse1I ACTGG 2 cut(s) 66, 244
BseDI CCNNGG 2 cut(s) 34, 636
BseGI GGATG 3 cut(s) 114, 159, 241
BseMII CTCAG 3 cut(s) 89, 437, 504
BseNI ACTGG 2 cut(s) 66, 244
Bsh1236I CGCG 4 cut(s) 171, 179, 680, 712
BshFI GGCC 3 cut(s) 730, 751, 755
BshNI GGYRCC 1 cut(s) 544
BsiSI CCGG 5 cut(s) 36, 434, 527, 731, 752
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 730, 751, 755
Bsp143I GATC 4 cut(s) 38, 381, 739, 764
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 5 cut(s) 144, 174, 177, 551, 710
BspANI GGCC 3 cut(s) 730, 751, 755
BspCNI CTCAG 3 cut(s) 88, 438, 505
BspFNI CGCG 4 cut(s) 171, 179, 680, 712
BspLI GGNNCC 4 cut(s) 546, 633, 672, 766
BspPI GGATC 3 cut(s) 46, 759, 772
BspT107I GGYRCC 1 cut(s) 544
BsrFI RCCGGY 2 cut(s) 730, 751
BsrI ACTGG 2 cut(s) 66, 244
BssAI RCCGGY 2 cut(s) 730, 751
BssECI CCNNGG 2 cut(s) 34, 636
BssMI GATC 4 cut(s) 38, 381, 739, 764
BssNI GRCGYC 1 cut(s) 477
BssT1I CCWWGG 1 cut(s) 636
BstACI GRCGYC 1 cut(s) 477
BstBAI YACGTR 3 cut(s) 295, 594, 706
BstC8I GCNNGC 2 cut(s) 303, 753
BstDEI CTNAG 4 cut(s) 75, 446, 513, 683
BstF5I GGATG 3 cut(s) 114, 159, 241
BstFNI CGCG 4 cut(s) 171, 179, 680, 712
BstH2I RGCGCY 1 cut(s) 572
BstHHI GCGC 3 cut(s) 173, 571, 682
BstKTI GATC 4 cut(s) 41, 384, 742, 767
BstMBI GATC 4 cut(s) 38, 381, 739, 764
BstMWI GCNNNNNNNGC 5 cut(s) 182, 434, 559, 568, 679
BstNSI RCATGY 2 cut(s) 305, 367
BstSCI CCNGG 2 cut(s) 34, 526
BstSFI CTRYAG 1 cut(s) 306
BstSNI TACGTA 1 cut(s) 594
BstUI CGCG 4 cut(s) 171, 179, 680, 712
BstX2I RGATCY 1 cut(s) 764
BstYI RGATCY 1 cut(s) 764
BsuI GTATCC 2 cut(s) 502, 583
BsuRI GGCC 3 cut(s) 730, 751, 755
BtsCI GGATG 3 cut(s) 114, 159, 241
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 2 cut(s) 303, 753
CfoI GCGC 3 cut(s) 173, 571, 682
Cfr10I RCCGGY 2 cut(s) 730, 751
Cfr13I GGNCC 3 cut(s) 728, 749, 754
CseI GACGC 2 cut(s) 168, 485
Csp6I GTAC 3 cut(s) 372, 595, 625
CviAII CATG 7 cut(s) 92, 130, 302, 319, 364, 379, 454
CviQI GTAC 3 cut(s) 372, 595, 625
DdeI CTNAG 4 cut(s) 75, 446, 513, 683
DpnI GATC 4 cut(s) 40, 383, 741, 766
DpnII GATC 4 cut(s) 38, 381, 739, 764
DriI GACNNNNNGTC 1 cut(s) 319
Eam1105I GACNNNNNGTC 1 cut(s) 319
Eco105I TACGTA 1 cut(s) 594
Eco130I CCWWGG 1 cut(s) 636
Eco72I CACGTG 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 7 cut(s) 95, 133, 305, 322, 367, 382, 457
FaqI GGGAC 1 cut(s) 41
FatI CATG 7 cut(s) 91, 129, 301, 318, 363, 378, 453
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 2 cut(s) 219, 695
Fnu4HI GCNGC 3 cut(s) 174, 177, 710
FokI GGATG 3 cut(s) 101, 146, 248
FseI GGCCGGCC 1 cut(s) 755
Fsp4HI GCNGC 3 cut(s) 174, 177, 710
FspBI CTAG 2 cut(s) 53, 83
GlaI GCGC 3 cut(s) 172, 570, 681
GluI GCNGC 3 cut(s) 174, 177, 710
HaeII RGCGCY 1 cut(s) 572
HaeIII GGCC 3 cut(s) 730, 751, 755
HapII CCGG 5 cut(s) 36, 434, 527, 731, 752
HgaI GACGC 2 cut(s) 168, 485
HhaI GCGC 3 cut(s) 173, 571, 682
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 7 cut(s) 95, 133, 305, 322, 367, 382, 457
Hin6I GCGC 3 cut(s) 171, 569, 680
HinP1I GCGC 3 cut(s) 171, 569, 680
HincII GTYRAC 2 cut(s) 88, 519
HindII GTYRAC 2 cut(s) 88, 519
HinfI GANTC 4 cut(s) 102, 332, 406, 700
HpaII CCGG 5 cut(s) 36, 434, 527, 731, 752
HphI GGTGA 2 cut(s) 112, 118
Hpy166II GTNNAC 6 cut(s) 88, 220, 361, 519, 696, 718
Hpy188I TCNGA 4 cut(s) 13, 47, 447, 490
Hpy188III TCNNGA 2 cut(s) 762, 768
Hpy8I GTNNAC 6 cut(s) 88, 220, 361, 519, 696, 718
Hpy99I CGWCG 3 cut(s) 389, 442, 494
HpyAV CCTTC 2 cut(s) 218, 577
HpyCH4IV ACGT 7 cut(s) 294, 374, 387, 440, 593, 656, 705
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 434, 559, 568, 679
HpyF3I CTNAG 4 cut(s) 75, 446, 513, 683
HpySE526I ACGT 7 cut(s) 294, 374, 387, 440, 593, 656, 705
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 7 cut(s) 95, 133, 305, 322, 367, 382, 457
HspAI GCGC 3 cut(s) 171, 569, 680
KroI GCCGGC 1 cut(s) 751
KroNI GCCGGC 1 cut(s) 753
Kzo9I GATC 4 cut(s) 38, 381, 739, 764
LmnI GCTCC 1 cut(s) 670
LweI GCATC 1 cut(s) 201
MaeI CTAG 2 cut(s) 53, 83
MaeII ACGT 7 cut(s) 294, 374, 387, 440, 593, 656, 705
MaeIII GTNAC 1 cut(s) 701
MalI GATC 4 cut(s) 40, 383, 741, 766
MboI GATC 4 cut(s) 38, 381, 739, 764
MflI RGATCY 1 cut(s) 764
MluCI AATT 1 cut(s) 665
MlyI GAGTC 2 cut(s) 341, 709
MmeI TCCRAC 1 cut(s) 513
MnlI CCTC 8 cut(s) 7, 108, 128, 212, 226, 326, 334, 558
MroNI GCCGGC 1 cut(s) 751
MseI TTAA 1 cut(s) 744
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 553
MspI CCGG 5 cut(s) 36, 434, 527, 731, 752
MspR9I CCNGG 2 cut(s) 36, 528
MvnI CGCG 4 cut(s) 171, 179, 680, 712
MwoI GCNNNNNNNGC 5 cut(s) 182, 434, 559, 568, 679
NaeI GCCGGC 1 cut(s) 753
NciI CCSGG 2 cut(s) 36, 528
NdeII GATC 4 cut(s) 38, 381, 739, 764
NgoMIV GCCGGC 1 cut(s) 751
NlaIII CATG 7 cut(s) 95, 133, 305, 322, 367, 382, 457
NlaIV GGNNCC 4 cut(s) 546, 633, 672, 766
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 701
NspI RCATGY 2 cut(s) 305, 367
PaeI GCATGC 1 cut(s) 305
PciI ACATGT 1 cut(s) 363
PcsI WCGNNNNNNNCGW 3 cut(s) 393, 498, 695
PdiI GCCGGC 1 cut(s) 753
PfeI GAWTC 2 cut(s) 102, 406
PkrI GCNGC 3 cut(s) 175, 178, 711
PleI GAGTC 2 cut(s) 340, 708
PmaCI CACGTG 1 cut(s) 706
PmlI CACGTG 1 cut(s) 706
PpsI GAGTC 2 cut(s) 340, 708
Ppu21I YACGTR 3 cut(s) 295, 594, 706
PscI ACATGT 1 cut(s) 363
PspCI CACGTG 1 cut(s) 706
PspN4I GGNNCC 4 cut(s) 546, 633, 672, 766
PspPI GGNCC 3 cut(s) 728, 749, 754
PsuI RGATCY 1 cut(s) 764
RigI GGCCGGCC 1 cut(s) 755
RsaI GTAC 3 cut(s) 373, 596, 626
RsaNI GTAC 3 cut(s) 372, 595, 625
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 3 cut(s) 174, 177, 710
Sau3AI GATC 4 cut(s) 38, 381, 739, 764
Sau96I GGNCC 3 cut(s) 728, 749, 754
SchI GAGTC 2 cut(s) 341, 709
ScrFI CCNGG 2 cut(s) 36, 528
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 306
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SnaBI TACGTA 1 cut(s) 594
SphI GCATGC 1 cut(s) 305
Sse9I AATT 1 cut(s) 665
SsiI CCGC 5 cut(s) 144, 174, 177, 551, 710
SspMI CTAG 2 cut(s) 53, 83
StyD4I CCNGG 2 cut(s) 34, 526
StyI CCWWGG 1 cut(s) 636
TaiI ACGT 7 cut(s) 297, 377, 390, 443, 596, 659, 708
TaqI TCGA 4 cut(s) 66, 100, 335, 384
TasI AATT 1 cut(s) 665
TauI GCSGC 3 cut(s) 176, 179, 712
TfiI GAWTC 2 cut(s) 102, 406
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 3 cut(s) 13, 442, 449
TspRI CASTG 1 cut(s) 66
XceI RCATGY 2 cut(s) 305, 367
XmiI GTMKAC 2 cut(s) 219, 695
XspI CTAG 2 cut(s) 53, 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.