FvH4_3g21420

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000201
Physical Location & Seq
Reverse (-)
14504613 .. 14505287
675 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21420.t1

Sequence Viewer

Length: 675 bp
ATGGCCACTCTTTCTTTCACCTTCATTGTAATATACTTGTCTTGTTGTTTCTTCAAAAGTTCAACTGCAGCAGCAGCTGGCAGCACCTTAGTTTCCAAAAATGGCAGCTTTGAGTTGGGTTCTTTCAGTCCTCAAGGTACTATTTTCCATAGGAGTCTTCTAGCATCAACTCCTCCGGGAGATATATGTGACGCTGATGGCCGATGTGGTCCGAATGGACTATGTGCCATTAGTGACTGGCAAGTTTGCAGCTGCTTAAAGGGATTCAAGCCAAAAGTAGAAGAGAACTGGAGATTTGGGGAAAACTCGGATGGTTGTGTTCGTGTTACTCCATTAATGTGCCAAAATAAGGATGATGGGTTTTTGAAATATGCCGGGGTAAAAGTGCTGGCGAGCACAGACTCTAGGGTGAACCTGAGTTTGAGTCTCGAGGAATGCAAGAAGAATTGCTTTAACAACTGTTCTTGTATAGCTTATGAAAGCTCTGATGTCAATGGCTGCGTTGCCTGGTTTGGTGATCTTCTGAACATTAGAAAGCTTGCACATGGAGGGGCGGATCTTTATGTTCGAATGCCTGCTTCGGAACTAGGTATGCGACAGAGGACTTTGCATGATTATTTCCCTGCTTCACTATGTTCTTCAATGCTCATAATTTTGATTATAGCTGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

225

Amino Acids

24.27

Weight (kDa)

6.78

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 56 - 92 2e-08 S-locus glycoprotein domain
PAN_2 PF08276 114 - 177 2.9e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 554
AclWI GGATC 1 cut(s) 564
AcoI YGGCCR 2 cut(s) 3, 199
AfaI GTAC 1 cut(s) 139
AfiI CCNNNNNNNGG 1 cut(s) 349
AgsI TTSAA 5 cut(s) 55, 63, 268, 367, 642
AjnI CCWGG 1 cut(s) 506
AluBI AGCT 7 cut(s) 77, 108, 252, 473, 483, 538, 665
AluI AGCT 7 cut(s) 77, 108, 252, 473, 483, 538, 665
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 564
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 2 cut(s) 3, 199
ApeKI GCWGC 8 cut(s) 68, 71, 74, 81, 105, 249, 252, 498
AseI ATTAAT 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 2 cut(s) 177, 376
AsuHPI GGTGA 3 cut(s) 10, 421, 527
AsuII TTCGAA 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 8 cut(s) 80, 83, 86, 93, 117, 239, 261, 485
BccI CCATC 3 cut(s) 191, 305, 350
BciT130I CCWGG 1 cut(s) 508
BcnI CCSGG 2 cut(s) 177, 376
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 3 cut(s) 161, 405, 587
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 8 cut(s) 69, 72, 75, 82, 106, 250, 253, 499
BlsI GCNGC 8 cut(s) 70, 73, 76, 83, 107, 251, 254, 500
Bme1390I CCNGG 3 cut(s) 177, 376, 508
Bme18I GGWCC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 3 cut(s) 177, 376, 508
BmsI GCATC 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 568
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 2 cut(s) 177, 376
BsaJI CCNNGG 1 cut(s) 375
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 2 cut(s) 242, 293
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 375
BseGI GGATG 2 cut(s) 316, 358
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 2 cut(s) 242, 293
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 8 cut(s) 80, 83, 86, 93, 117, 239, 261, 485
BshFI GGCC 2 cut(s) 5, 201
BsiHKAI GWGCWC 1 cut(s) 398
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 176, 375
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 431
BsmI GAATGC 2 cut(s) 440, 576
BsnI GGCC 2 cut(s) 5, 201
BsoBI CYCGRG 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 568
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 2 cut(s) 517, 556
BspACI CCGC 1 cut(s) 554
BspANI GGCC 2 cut(s) 5, 201
BspCNI CTCAG 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 568
BsrI ACTGG 2 cut(s) 242, 293
BssECI CCNNGG 1 cut(s) 375
BssMI GATC 2 cut(s) 517, 556
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 568
BstC8I GCNNGC 5 cut(s) 79, 390, 394, 540, 576
BstDEI CTNAG 2 cut(s) 88, 416
BstF5I GGATG 2 cut(s) 316, 358
BstKTI GATC 2 cut(s) 520, 559
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 517, 556
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 508
BstSCI CCNGG 3 cut(s) 175, 374, 506
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 8 cut(s) 80, 83, 86, 93, 117, 239, 261, 485
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 2 cut(s) 5, 201
BtsCI GGATG 2 cut(s) 316, 358
Cac8I GCNNGC 5 cut(s) 79, 390, 394, 540, 576
CaiI CAGNNNCTG 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 545, 611
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 2 cut(s) 88, 416
DpnI GATC 2 cut(s) 519, 558
DpnII GATC 2 cut(s) 517, 556
EaeI YGGCCR 2 cut(s) 3, 199
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 506
FaeI CATG 2 cut(s) 548, 614
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FatI CATG 2 cut(s) 544, 610
Fnu4HI GCNGC 8 cut(s) 69, 72, 75, 82, 106, 250, 253, 499
FokI GGATG 2 cut(s) 323, 365
Fsp4HI GCNGC 8 cut(s) 69, 72, 75, 82, 106, 250, 253, 499
FspBI CTAG 3 cut(s) 161, 405, 587
GluI GCNGC 8 cut(s) 69, 72, 75, 82, 106, 250, 253, 499
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 2 cut(s) 5, 201
HapII CCGG 2 cut(s) 176, 375
HgaI GACGC 1 cut(s) 200
Hin1II CATG 2 cut(s) 548, 614
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 4 cut(s) 154, 264, 401, 424
HpaII CCGG 2 cut(s) 176, 375
HphI GGTGA 3 cut(s) 10, 421, 527
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 5 cut(s) 213, 310, 487, 525, 583
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4V TGCA 5 cut(s) 68, 249, 438, 542, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 88, 416
Hsp92II CATG 2 cut(s) 548, 614
Kzo9I GATC 2 cut(s) 517, 556
Lsp1109I GCAGC 8 cut(s) 80, 83, 86, 93, 117, 239, 261, 485
LweI GCATC 1 cut(s) 173
MaeI CTAG 3 cut(s) 161, 405, 587
MaeIII GTNAC 3 cut(s) 188, 233, 325
MalI GATC 2 cut(s) 519, 558
MboI GATC 2 cut(s) 517, 556
MboII GAAGA 6 cut(s) 43, 149, 293, 454, 512, 630
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 398
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 445, 651
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 163, 395, 433
MnlI CCTC 5 cut(s) 141, 183, 424, 542, 594
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 257, 335, 453, 673
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 77, 252
MspI CCGG 2 cut(s) 176, 375
MspR9I CCNGG 3 cut(s) 177, 376, 508
Mva1269I GAATGC 2 cut(s) 440, 576
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 2 cut(s) 177, 376
NdeII GATC 2 cut(s) 517, 556
NlaIII CATG 2 cut(s) 548, 614
NmuCI GTSAC 2 cut(s) 188, 233
NspV TTCGAA 1 cut(s) 568
PaeR7I CTCGAG 1 cut(s) 428
PctI GAATGC 2 cut(s) 440, 576
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 8 cut(s) 70, 73, 76, 83, 107, 251, 254, 500
PleI GAGTC 3 cut(s) 162, 395, 432
PpsI GAGTC 3 cut(s) 162, 395, 432
PshBI ATTAAT 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 556
PvuII CAGCTG 2 cut(s) 77, 252
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 4 cut(s) 257, 335, 453, 673
SatI GCNGC 8 cut(s) 69, 72, 75, 82, 106, 250, 253, 499
Sau3AI GATC 2 cut(s) 517, 556
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 3 cut(s) 163, 395, 433
ScrFI CCNGG 3 cut(s) 177, 376, 508
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 428
SfuI TTCGAA 1 cut(s) 568
SinI GGWCC 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 132, 428
SmoI CTYRAG 2 cut(s) 132, 428
Sse9I AATT 2 cut(s) 445, 651
SsiI CCGC 1 cut(s) 554
SspMI CTAG 3 cut(s) 161, 405, 587
StyD4I CCNGG 3 cut(s) 175, 374, 506
TaaI ACNGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 429, 568
TasI AATT 2 cut(s) 445, 651
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 4 cut(s) 257, 335, 453, 673
Tru9I TTAA 4 cut(s) 257, 335, 453, 673
TseFI GTSAC 2 cut(s) 188, 233
TseI GCWGC 8 cut(s) 68, 71, 74, 81, 105, 249, 252, 498
Tsp45I GTSAC 2 cut(s) 188, 233
TspDTI ATGAA 2 cut(s) 13, 492
VpaK11BI GGWCC 1 cut(s) 209
VspI ATTAAT 1 cut(s) 335
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 3 cut(s) 161, 405, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.