Rh3AG255400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
27913627 .. 27915178
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG255400.1

Sequence Viewer

Length: 651 bp
ATGAAAAATTTCCAGCACCCCAATATTCATGTTGAAGCAGAAAATTATTCTCCCCTCTCCTCTCTCCTTTCTTTCCTTCTCTATTTCTTTCATTGTCACCTGAGTTTTTTTTTTTCTTCCTTCAAACGGATGGTCTCATCCTTTCTCCTATCTTCCTTTCTCTTTTTCCTTGTATGTAATCAATGTGATTCTAGTGGTTATATGTCTCCGGAATATGCAATGGAAGGACTGTTTTCAATAAAGTCTGATGTATATAGTTTTGGTGTTTTACTGCTGGAAATCATTATTGGCAAAAAGAATGCTGGTTATTACCATGAGGAGTATTCTAATTCAAATTTGGTTGGACATGTTTGGGAGTTGTGGAAAAAAGGTAGAGCTGTGGAAGTCATTGATTCATCTATAGGTGAATCTTACCTTGTTAGTGAAGTTATAAGGTGCATTCAAATCTCACTCTTGTGTGTGCAAGAATTTGCCACTGACCGGCCAACCATGTCAGCAGTTGTTTCCATGTTAGGTAATGATGCAGCCCTTCCTTCACCAAGACGACCCGCATTTTTACTAAAGAGAACGAGTCCTAGTGGAGACCCATCCAGCAGCGAAGGAGCTAATTCAGTAAATGATGTCACATGTACAATTATAGAAGCTCGCTAA

Protein Analysis

216

Amino Acids

24.19

Weight (kDa)

5.66

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 67 - 170 3.4e-08 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 173 - 216 8.1e-09 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 1 cut(s) 549
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 3 cut(s) 7, 334, 467
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 2 cut(s) 126, 480
AflIII ACRYGT 2 cut(s) 346, 626
AgsI TTSAA 5 cut(s) 35, 124, 237, 333, 443
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AleI CACNNNNGTG 1 cut(s) 454
AluBI AGCT 3 cut(s) 377, 605, 644
AluI AGCT 3 cut(s) 377, 605, 644
Alw26I GTCTC 3 cut(s) 139, 210, 576
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 1 cut(s) 482
ApeKI GCWGC 2 cut(s) 524, 594
ApoI RAATTY 3 cut(s) 7, 334, 467
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
Asp700I GAANNNNTTC 1 cut(s) 8
AsuHPI GGTGA 3 cut(s) 89, 416, 528
BbvI GCAGC 2 cut(s) 536, 606
BccI CCATC 2 cut(s) 124, 595
BcoDI GTCTC 3 cut(s) 139, 210, 576
BfaI CTAG 2 cut(s) 192, 576
BfmI CTRYAG 1 cut(s) 399
BisI GCNGC 2 cut(s) 525, 595
BlsI GCNGC 2 cut(s) 526, 596
BmsI GCATC 1 cut(s) 511
BsaI GGTCTC 2 cut(s) 139, 576
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 480
Bse118I RCCGGY 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 208
BseGI GGATG 3 cut(s) 135, 137, 587
BseLI CCNNNNNNNGG 2 cut(s) 126, 480
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 92
BseRI GAGGAG 2 cut(s) 49, 332
BseXI GCAGC 2 cut(s) 536, 606
BshFI GGCC 1 cut(s) 484
BsiSI CCGG 2 cut(s) 209, 481
BslI CCNNNNNNNGG 2 cut(s) 126, 480
BsmAI GTCTC 3 cut(s) 139, 210, 576
BsmI GAATGC 2 cut(s) 304, 438
BsnI GGCC 1 cut(s) 484
Bso31I GGTCTC 2 cut(s) 139, 576
Bsp13I TCCGGA 1 cut(s) 208
Bsp1407I TGTACA 1 cut(s) 629
BspACI CCGC 1 cut(s) 549
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 93
BspEI TCCGGA 1 cut(s) 208
BspTNI GGTCTC 2 cut(s) 139, 576
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 480
BsrGI TGTACA 1 cut(s) 629
BssAI RCCGGY 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 3 cut(s) 135, 137, 587
BstMAI GTCTC 3 cut(s) 139, 210, 576
BstNSI RCATGY 2 cut(s) 350, 630
BstSFI CTRYAG 1 cut(s) 399
BstV1I GCAGC 2 cut(s) 536, 606
BsuRI GGCC 1 cut(s) 484
BtsCI GGATG 3 cut(s) 135, 137, 587
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 646
Cfr10I RCCGGY 1 cut(s) 480
Csp6I GTAC 1 cut(s) 630
CviAII CATG 6 cut(s) 29, 314, 347, 490, 508, 627
CviJI RGCY 5 cut(s) 377, 484, 527, 605, 644
CviKI_1 RGCY 5 cut(s) 377, 484, 527, 605, 644
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 482
Eco31I GGTCTC 2 cut(s) 139, 576
FaeI CATG 6 cut(s) 32, 317, 350, 493, 511, 630
FatI CATG 6 cut(s) 28, 313, 346, 489, 507, 626
FauI CCCGC 1 cut(s) 556
Fnu4HI GCNGC 2 cut(s) 525, 595
FokI GGATG 3 cut(s) 124, 142, 574
Fsp4HI GCNGC 2 cut(s) 525, 595
FspBI CTAG 2 cut(s) 192, 576
GluI GCNGC 2 cut(s) 525, 595
HaeIII GGCC 1 cut(s) 484
HapII CCGG 2 cut(s) 209, 481
Hin1II CATG 6 cut(s) 32, 317, 350, 493, 511, 630
HinfI GANTC 4 cut(s) 188, 392, 407, 571
HpaII CCGG 2 cut(s) 209, 481
HphI GGTGA 3 cut(s) 89, 416, 528
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 1 cut(s) 209
HpyAV CCTTC 6 cut(s) 86, 130, 218, 539, 543, 593
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 218, 438, 463, 524
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 6 cut(s) 32, 317, 350, 493, 511, 630
Kpn2I TCCGGA 1 cut(s) 208
LmnI GCTCC 1 cut(s) 602
LpnPI CCDG 7 cut(s) 26, 113, 222, 260, 288, 494, 604
Lsp1109I GCAGC 2 cut(s) 536, 606
LweI GCATC 1 cut(s) 511
MaeI CTAG 2 cut(s) 192, 576
MaeIII GTNAC 2 cut(s) 95, 622
MboII GAAGA 2 cut(s) 108, 144
MluCI AATT 7 cut(s) 7, 43, 328, 334, 467, 607, 633
MlyI GAGTC 1 cut(s) 580
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 3 cut(s) 65, 70, 310
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 454
MspI CCGG 2 cut(s) 209, 481
Mva1269I GAATGC 2 cut(s) 304, 438
NlaIII CATG 6 cut(s) 32, 317, 350, 493, 511, 630
NmuCI GTSAC 2 cut(s) 95, 622
NspI RCATGY 2 cut(s) 350, 630
OliI CACNNNNGTG 1 cut(s) 454
PciI ACATGT 2 cut(s) 346, 626
PctI GAATGC 2 cut(s) 304, 438
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 188, 392, 407
PkrI GCNGC 2 cut(s) 526, 596
PleI GAGTC 1 cut(s) 579
PpsI GAGTC 1 cut(s) 579
PscI ACATGT 2 cut(s) 346, 626
PsiI TTATAA 1 cut(s) 431
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 454
SatI GCNGC 2 cut(s) 525, 595
SchI GAGTC 1 cut(s) 580
SetI ASST 9 cut(s) 102, 373, 379, 406, 417, 437, 517, 607, 646
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 454
Sse9I AATT 7 cut(s) 7, 43, 328, 334, 467, 607, 633
SsiI CCGC 1 cut(s) 549
SspI AATATT 1 cut(s) 25
SspMI CTAG 2 cut(s) 192, 576
TaaI ACNGT 1 cut(s) 231
TasI AATT 7 cut(s) 7, 43, 328, 334, 467, 607, 633
TatI WGTACW 1 cut(s) 629
TfiI GAWTC 3 cut(s) 188, 392, 407
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 2 cut(s) 95, 622
TseI GCWGC 2 cut(s) 524, 594
Tsp45I GTSAC 2 cut(s) 95, 622
TspDTI ATGAA 4 cut(s) 17, 17, 80, 384
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 481
XapI RAATTY 3 cut(s) 7, 334, 467
XceI RCATGY 2 cut(s) 350, 630
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 192, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.