pycom05g20300

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000201
Physical Location & Seq
Reverse (-)
23104701 .. 23106133
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20300.4

Sequence Viewer

Length: 981 bp
ATGACTATAGTTTCTGCAACCAGTAACTTTTCAATTGAAAACAAACTTGGTGAAGGCGGTTTCGGATCTGTCTTTAAGGGTACGATGGAAGACGGACAAGAAATCCCAGTGAAAAGGCTTTCAAAAAGTTCTAGACAAGGACTCGACGAGTTCAAGAATGAAGTTACACATATTGCCAAACTTCAGCATAGGAATCTAGTGAAGCTTTTTGGATGTTGCATTCAAGAAGACGAGATGATATTGATCTACGAGTTCATGCCTAACAAAAGCTTAGACTTCTTTATTTTCGATCAAAGAAGAAGGATGTTATTAGACTGGCCGAAGCGCTTTGAAATTATTAATGGAATAGCTCGAGGGCTCCTCTATCTTCATCAAGATTCTAGATTGAGAGTTATTCATAGAGATCTCAAAGCAAGTAACATTTTATTAGGCAGTGAATTTAACCCGAAAATCTCAGACTTTGGCTTGGCTAGAAGCTTTGGAGGAAATGAAACGAAAGCAGAAACGAAGAAAGTGGTCGGAACATACGGTTACATGTCCCCAGAATATGCAATTGATGGTTTCTACTCTATAAAGTCCGACGTCTATAGCTTTGGTGTTCTGGTGCTAGAGATAGTGAGTGGGAGCAAAAATAGAGGATTCTCTCATCCAGACCACAAACTTAACCTTCTTGGACATGCATGGATGCTACACACAGAAGGCAGGCCTCTCGAACTGCTTGATGCATCGATAGAGGACTCCGTCACTTTGCATGAAGTTGTAAGAACGATTCATGTGGGTCTTTTGTGCGTGCAGCAGAATCCAGAAGACAGGCCGAGCATGTCAGCTGCAGTTCTAATGTTGGGTAGTGAAGGTGCGTTGCCCCCACCTCTAAAACCTGGTTTTTACAGTGAAAGGGATCTGACTGAACTCGAAGTCGGTCATTCTTCTAAAGCATGCTCAGCTAATGAAGTCACTATTTCACTAGTCGAGGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

327

Amino Acids

36.48

Weight (kDa)

6.14

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 585
AciI CCGC 1 cut(s) 57
AclWI GGATC 2 cut(s) 73, 906
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 1 cut(s) 82
AfeI AGCGCT 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 6 cut(s) 33, 38, 123, 154, 224, 332
AhlI ACTAGT 1 cut(s) 964
AjnI CCWGG 1 cut(s) 877
AjuI GAANNNNNNNTTGG 2 cut(s) 30, 62
AluBI AGCT 7 cut(s) 205, 270, 350, 477, 591, 827, 944
AluI AGCT 7 cut(s) 205, 270, 350, 477, 591, 827, 944
AlwI GGATC 2 cut(s) 73, 906
Ama87I CYCGRG 1 cut(s) 351
Aor51HI AGCGCT 1 cut(s) 326
AoxI GGCC 3 cut(s) 317, 704, 812
ApeKI GCWGC 2 cut(s) 793, 827
ApoI RAATTY 1 cut(s) 437
AseI ATTAAT 1 cut(s) 339
AspLEI GCGC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 351
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 3 cut(s) 96, 234, 813
BbvI GCAGC 2 cut(s) 805, 814
BccI CCATC 2 cut(s) 79, 551
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 1 cut(s) 879
BcuI ACTAGT 1 cut(s) 964
BfaI CTAG 6 cut(s) 132, 197, 381, 471, 608, 965
BfmI CTRYAG 3 cut(s) 6, 586, 828
BfoI RGCGCY 1 cut(s) 328
BglII AGATCT 1 cut(s) 403
BisI GCNGC 2 cut(s) 794, 828
BlpI GCTNAGC 1 cut(s) 940
BlsI GCNGC 2 cut(s) 795, 829
Bme1390I CCNGG 1 cut(s) 879
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 879
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 675, 712, 734
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 3 cut(s) 96, 234, 813
BplI GAGNNNNNCTC 2 cut(s) 345, 377
Bpu1102I GCTNAGC 1 cut(s) 940
Bsa29I ATCGAT 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 1 cut(s) 582
Bse1I ACTGG 3 cut(s) 21, 107, 320
Bse8I GATNNNNATC 1 cut(s) 242
BseBI CCWGG 1 cut(s) 879
BseCI ATCGAT 1 cut(s) 728
BseGI GGATG 4 cut(s) 218, 309, 646, 690
BseJI GATNNNNATC 1 cut(s) 242
BseMII CTCAG 2 cut(s) 468, 954
BseNI ACTGG 3 cut(s) 21, 107, 320
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 805, 814
BsgI GTGCAG 1 cut(s) 812
BshFI GGCC 3 cut(s) 319, 706, 814
BshVI ATCGAT 1 cut(s) 728
BsiHKCI CYCGRG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 3 cut(s) 319, 706, 814
BsoBI CYCGRG 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 5 cut(s) 65, 243, 289, 403, 898
Bsp1720I GCTNAGC 1 cut(s) 940
BspACI CCGC 1 cut(s) 57
BspANI GGCC 3 cut(s) 319, 706, 814
BspCNI CTCAG 2 cut(s) 467, 953
BspDI ATCGAT 1 cut(s) 728
BspLI GGNNCC 1 cut(s) 359
BspMAI CTGCAG 1 cut(s) 832
BspPI GGATC 2 cut(s) 73, 906
BsrI ACTGG 3 cut(s) 21, 107, 320
BssMI GATC 5 cut(s) 65, 243, 289, 403, 898
BssNI GRCGYC 1 cut(s) 582
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 2 cut(s) 530, 890
BstACI GRCGYC 1 cut(s) 582
BstC8I GCNNGC 3 cut(s) 704, 791, 937
BstDEI CTNAG 3 cut(s) 271, 454, 940
BstF5I GGATG 4 cut(s) 218, 309, 646, 690
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 5 cut(s) 68, 246, 292, 406, 901
BstMBI GATC 5 cut(s) 65, 243, 289, 403, 898
BstMWI GCNNNNNNNGC 1 cut(s) 941
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 4 cut(s) 538, 680, 823, 939
BstSCI CCNGG 1 cut(s) 877
BstSFI CTRYAG 3 cut(s) 6, 586, 828
BstV1I GCAGC 2 cut(s) 805, 814
BstV2I GAAGAC 3 cut(s) 96, 234, 813
BstX2I RGATCY 3 cut(s) 65, 403, 898
BstYI RGATCY 3 cut(s) 65, 403, 898
Bsu15I ATCGAT 1 cut(s) 728
BsuRI GGCC 3 cut(s) 319, 706, 814
BsuTUI ATCGAT 1 cut(s) 728
BtsCI GGATG 4 cut(s) 218, 309, 646, 690
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 3 cut(s) 114, 439, 895
Cac8I GCNNGC 3 cut(s) 704, 791, 937
CfoI GCGC 1 cut(s) 327
ClaI ATCGAT 1 cut(s) 728
CsiI ACCWGGT 1 cut(s) 877
Csp6I GTAC 1 cut(s) 81
CviAII CATG 8 cut(s) 256, 535, 677, 681, 752, 773, 820, 936
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 3 cut(s) 271, 454, 940
DpnI GATC 5 cut(s) 67, 245, 291, 405, 900
DpnII GATC 5 cut(s) 65, 243, 289, 403, 898
EaeI YGGCCR 1 cut(s) 317
Eco147I AGGCCT 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 360
Eco47III AGCGCT 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 877
EcoT22I ATGCAT 2 cut(s) 682, 727
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 8 cut(s) 259, 538, 680, 684, 755, 776, 823, 939
FaqI GGGAC 1 cut(s) 523
FatI CATG 8 cut(s) 255, 534, 676, 680, 751, 772, 819, 935
Fnu4HI GCNGC 2 cut(s) 794, 828
FokI GGATG 4 cut(s) 225, 316, 633, 697
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 794, 828
FspBI CTAG 6 cut(s) 132, 197, 381, 471, 608, 965
GlaI GCGC 1 cut(s) 326
GluI GCNGC 2 cut(s) 794, 828
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 3 cut(s) 319, 706, 814
HhaI GCGC 1 cut(s) 327
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 8 cut(s) 259, 538, 680, 684, 755, 776, 823, 939
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 3 cut(s) 203, 268, 475
HinfI GANTC 7 cut(s) 141, 193, 377, 639, 737, 769, 799
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 5 cut(s) 65, 457, 521, 580, 903
Hpy188III TCNNGA 8 cut(s) 132, 154, 224, 374, 381, 650, 710, 803
Hpy99I CGWCG 2 cut(s) 149, 584
HpyAV CCTTC 5 cut(s) 47, 294, 677, 692, 845
HpyCH4III ACNGT 2 cut(s) 530, 890
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 8 cut(s) 17, 219, 551, 680, 725, 751, 793, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 941
HpyF3I CTNAG 3 cut(s) 271, 454, 940
HpySE526I ACGT 1 cut(s) 582
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 8 cut(s) 259, 538, 680, 684, 755, 776, 823, 939
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 5 cut(s) 65, 243, 289, 403, 898
LmnI GCTCC 2 cut(s) 363, 624
Lsp1109I GCAGC 2 cut(s) 805, 814
LweI GCATC 3 cut(s) 675, 712, 734
MabI ACCWGGT 1 cut(s) 877
MaeI CTAG 6 cut(s) 132, 197, 381, 471, 608, 965
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 6 cut(s) 23, 163, 416, 530, 742, 952
MalI GATC 5 cut(s) 67, 245, 291, 405, 900
MboI GATC 5 cut(s) 65, 243, 289, 403, 898
MboII GAAGA 7 cut(s) 101, 239, 309, 359, 520, 818, 918
MfeI CAATTG 2 cut(s) 33, 552
MflI RGATCY 3 cut(s) 65, 403, 898
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 4 cut(s) 33, 333, 437, 552
MlyI GAGTC 2 cut(s) 135, 731
MmeI TCCRAC 2 cut(s) 499, 603
MnlI CCTC 8 cut(s) 347, 371, 476, 629, 717, 727, 879, 964
Mph1103I ATGCAT 2 cut(s) 682, 727
MseI TTAA 4 cut(s) 75, 339, 441, 663
MspA1I CMGCKG 1 cut(s) 827
MspR9I CCNGG 1 cut(s) 879
MunI CAATTG 2 cut(s) 33, 552
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 879
MwoI GCNNNNNNNGC 1 cut(s) 941
NdeII GATC 5 cut(s) 65, 243, 289, 403, 898
NlaIII CATG 8 cut(s) 259, 538, 680, 684, 755, 776, 823, 939
NlaIV GGNNCC 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 840
NmuCI GTSAC 2 cut(s) 742, 952
NsiI ATGCAT 2 cut(s) 682, 727
NspI RCATGY 4 cut(s) 538, 680, 823, 939
PaeI GCATGC 1 cut(s) 939
PaeR7I CTCGAG 1 cut(s) 351
PceI AGGCCT 1 cut(s) 706
PciI ACATGT 1 cut(s) 534
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 5 cut(s) 193, 377, 639, 769, 799
PflFI GACNNNGTC 1 cut(s) 740
PkrI GCNGC 2 cut(s) 795, 829
PleI GAGTC 2 cut(s) 135, 731
PpsI GAGTC 2 cut(s) 135, 731
PscI ACATGT 1 cut(s) 534
PshBI ATTAAT 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 877
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 1 cut(s) 359
PspXI VCTCGAGB 1 cut(s) 351
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 3 cut(s) 65, 403, 898
PsyI GACNNNGTC 1 cut(s) 740
PvuII CAGCTG 1 cut(s) 827
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SaqAI TTAA 4 cut(s) 75, 339, 441, 663
SatI GCNGC 2 cut(s) 794, 828
Sau3AI GATC 5 cut(s) 65, 243, 289, 403, 898
SchI GAGTC 2 cut(s) 135, 731
ScrFI CCNGG 1 cut(s) 879
SduI GDGCHC 1 cut(s) 360
SexAI ACCWGGT 1 cut(s) 877
SfaNI GCATC 3 cut(s) 675, 712, 734
SfcI CTRYAG 3 cut(s) 6, 586, 828
Sfr274I CTCGAG 1 cut(s) 351
SlaI CTCGAG 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
SpeI ACTAGT 1 cut(s) 964
SphI GCATGC 1 cut(s) 939
Sse9I AATT 4 cut(s) 33, 333, 437, 552
SseBI AGGCCT 1 cut(s) 706
SsiI CCGC 1 cut(s) 57
SspMI CTAG 6 cut(s) 132, 197, 381, 471, 608, 965
StuI AGGCCT 1 cut(s) 706
StyD4I CCNGG 1 cut(s) 877
TaaI ACNGT 2 cut(s) 530, 890
TaiI ACGT 1 cut(s) 585
TaqI TCGA 8 cut(s) 144, 288, 352, 711, 728, 912, 969, 976
TaqII GACCGA 1 cut(s) 908
TasI AATT 4 cut(s) 33, 333, 437, 552
TfiI GAWTC 5 cut(s) 193, 377, 639, 769, 799
Tru1I TTAA 4 cut(s) 75, 339, 441, 663
Tru9I TTAA 4 cut(s) 75, 339, 441, 663
TscAI CASTG 3 cut(s) 114, 439, 895
TseFI GTSAC 2 cut(s) 742, 952
TseI GCWGC 2 cut(s) 793, 827
Tsp45I GTSAC 2 cut(s) 742, 952
TspDTI ATGAA 8 cut(s) 174, 244, 359, 386, 504, 761, 768, 963
TspGWI ACGGA 2 cut(s) 108, 730
TspRI CASTG 3 cut(s) 114, 439, 895
Tth111I GACNNNGTC 1 cut(s) 740
VspI ATTAAT 1 cut(s) 339
XapI RAATTY 1 cut(s) 437
XbaI TCTAGA 2 cut(s) 131, 380
XceI RCATGY 4 cut(s) 538, 680, 823, 939
XhoI CTCGAG 1 cut(s) 351
XspI CTAG 6 cut(s) 132, 197, 381, 471, 608, 965
ZraI GACGTC 1 cut(s) 583
Zsp2I ATGCAT 2 cut(s) 682, 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.