pycom03g16490

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000201
Physical Location & Seq
Forward (+)
17683283 .. 17684499
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g16490.1

Sequence Viewer

Length: 912 bp
ATGGCGGTGAAGAGACTGTCACAAAGTTCTGGTCAAGGACAGGCCGAGTTCAAAAATGAAGTTATACTGATAGCCAAACTTCAGCACCGGAATCTTGTAAAGCTTATTGGTTGTTGCATTGAGGGAGATGAGAAATTGCTGATTTATGAATACATGCCAAACAAAAGCTTGGACTTCTACATTTTTGATCAAACTCAAGGTAGAAAGTTGGATTGGTCTCGACGCTTCCACATTATCCGTGGGATCGCTAGGGGACTTCTCTATCTGCATCAAGATTCCAGACTGAGGATTATTCATAGAGATCTTAAAGCCAGTAATGTGCTGCTTGACAAAGATATGAACCCGAAAATCTCAGACTTTGGCATGGCTAGACTTTTTGGAGGAGATCAAACTGAAGCAGTTACAAAACGAGTTGTTGGAACCTATGGCTATATGGCACCAGAATATGCGATTGATGGTCATTTCTCTATAAAATCCGATGTTTTCAGCTTCGGTATTTTACTGCTGGAGACACTAAGTGGAAAGAGAAGTAGAGGGTTTTATGATCCAAATCACAATCTCAACCTAATTGGGCATGCGTGGCGATTGTGGAAAGAAGGACGGTCTTTAGAGCTGATTGATGAATACTTAACAGACTCGTGCAGTCTATCGGAAGTCTTGCGTTGCATACATGTTAGTCTTCTATGTGTGCAACATCTTCCAGAAGACAGGCCAACCATGTCATCTGTGGTTCTGATGTTAGGTGGTGAGAGTGCATTGCCTCAACCCAAAAAGCCAGGTTTCTTTATAGGAAATTATTCATCATCTGAAGCCGAATCTTCGAGTAAGAACGAAATATTTTCCCTTTCCGGTGTGAAAAAAGAAACATGTTCAACGATTGAATCTTCCATAACCGTGTTGGAGCCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

304

Amino Acids

34.24

Weight (kDa)

8.14

Isoelectric Point (pI)

54.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 1 - 243 2.8e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 244 6e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 251, 539
AcuI CTGAAG 3 cut(s) 65, 414, 828
AdeI CACNNNGTG 1 cut(s) 518
AfiI CCNNNNNNNGG 1 cut(s) 285
AflIII ACRYGT 2 cut(s) 670, 866
AgsI TTSAA 3 cut(s) 52, 873, 881
AjnI CCWGG 1 cut(s) 775
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 4 cut(s) 103, 168, 489, 613
AluI AGCT 4 cut(s) 103, 168, 489, 613
Alw26I GTCTC 3 cut(s) 7, 222, 503
AlwI GGATC 2 cut(s) 251, 539
AoxI GGCC 2 cut(s) 42, 710
ApeKI GCWGC 1 cut(s) 322
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 796
AsuHPI GGTGA 2 cut(s) 19, 758
BanI GGYRCC 1 cut(s) 436
BauI CACGAG 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 671, 711
BbvI GCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 777
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 7, 222, 503
BfaI CTAG 2 cut(s) 249, 369
BglII AGATCT 1 cut(s) 301
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 777
BmiI GGNNCC 3 cut(s) 421, 438, 903
BmrFI CCNGG 1 cut(s) 777
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 2 cut(s) 671, 711
BpmI CTGGAG 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 2 cut(s) 87, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 777
BseDI CCNNGG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 755
BseMII CTCAG 2 cut(s) 275, 366
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 396
BseXI GCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 661
BshFI GGCC 2 cut(s) 44, 712
BshNI GGYRCC 1 cut(s) 436
BsiSI CCGG 2 cut(s) 88, 849
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 3 cut(s) 7, 222, 503
BsmFI GGGAC 1 cut(s) 267
BsnI GGCC 2 cut(s) 44, 712
Bso31I GGTCTC 1 cut(s) 222
Bsp143I GATC 5 cut(s) 187, 243, 301, 385, 544
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 44, 712
BspCNI CTCAG 2 cut(s) 276, 365
BspLI GGNNCC 3 cut(s) 421, 438, 903
BspPI GGATC 2 cut(s) 251, 539
BspT107I GGYRCC 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 755
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 5 cut(s) 187, 243, 301, 385, 544
BssSI CACGAG 1 cut(s) 637
Bst2BI CACGAG 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 777
Bst4CI ACNGT 3 cut(s) 18, 603, 895
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 3 cut(s) 284, 352, 515
BstDSI CCRYGG 1 cut(s) 238
BstKTI GATC 5 cut(s) 190, 246, 304, 388, 547
BstMAI GTCTC 3 cut(s) 7, 222, 503
BstMBI GATC 5 cut(s) 187, 243, 301, 385, 544
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstNI CCWGG 1 cut(s) 777
BstNSI RCATGY 4 cut(s) 157, 578, 674, 870
BstSCI CCNGG 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 309
BstV2I GAAGAC 2 cut(s) 671, 711
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 2 cut(s) 44, 712
BtgI CCRYGG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 576
CseI GACGC 1 cut(s) 231
CviAII CATG 6 cut(s) 154, 364, 575, 671, 718, 867
DdeI CTNAG 3 cut(s) 284, 352, 515
DpnI GATC 5 cut(s) 189, 245, 303, 387, 546
DpnII GATC 5 cut(s) 187, 243, 301, 385, 544
DraIII CACNNNGTG 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco31I GGTCTC 1 cut(s) 222
Eco57I CTGAAG 3 cut(s) 65, 414, 828
EcoRII CCWGG 1 cut(s) 775
FaeI CATG 6 cut(s) 157, 367, 578, 674, 721, 870
FaqI GGGAC 1 cut(s) 267
FatI CATG 6 cut(s) 153, 363, 574, 670, 717, 866
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 1 cut(s) 323
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 2 cut(s) 249, 369
GluI GCNGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 2 cut(s) 44, 712
HapII CCGG 2 cut(s) 88, 849
HgaI GACGC 1 cut(s) 231
Hin1II CATG 6 cut(s) 157, 367, 578, 674, 721, 870
HindIII AAGCTT 2 cut(s) 101, 166
HinfI GANTC 5 cut(s) 91, 275, 635, 815, 881
HpaII CCGG 2 cut(s) 88, 849
HphI GGTGA 2 cut(s) 19, 758
Hpy188I TCNGA 5 cut(s) 355, 478, 652, 735, 808
Hpy188III TCNNGA 4 cut(s) 219, 272, 279, 701
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 590
HpyCH4III ACNGT 3 cut(s) 18, 603, 895
HpyCH4V TGCA 6 cut(s) 117, 268, 642, 666, 691, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 3 cut(s) 284, 352, 515
Hsp92II CATG 6 cut(s) 157, 367, 578, 674, 721, 870
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 5 cut(s) 187, 243, 301, 385, 544
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 1 cut(s) 309
LweI GCATC 1 cut(s) 277
MaeI CTAG 2 cut(s) 249, 369
MaeIII GTNAC 2 cut(s) 18, 400
MalI GATC 5 cut(s) 189, 245, 303, 387, 546
MboI GATC 5 cut(s) 187, 243, 301, 385, 544
MboII GAAGA 6 cut(s) 22, 671, 689, 716, 810, 876
MflI RGATCY 1 cut(s) 301
MluCI AATT 3 cut(s) 134, 567, 793
MlyI GAGTC 1 cut(s) 629
MmeI TCCRAC 3 cut(s) 189, 397, 879
MnlI CCTC 5 cut(s) 115, 279, 374, 527, 771
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 2 cut(s) 306, 629
MslI CAYNNNNRTG 1 cut(s) 893
MspI CCGG 2 cut(s) 88, 849
MspR9I CCNGG 1 cut(s) 777
MvaI CCWGG 1 cut(s) 777
MwoI GCNNNNNNNGC 1 cut(s) 580
NdeII GATC 5 cut(s) 187, 243, 301, 385, 544
NlaIII CATG 6 cut(s) 157, 367, 578, 674, 721, 870
NlaIV GGNNCC 3 cut(s) 421, 438, 903
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 18
NspI RCATGY 4 cut(s) 157, 578, 674, 870
PaeI GCATGC 1 cut(s) 578
PciI ACATGT 2 cut(s) 670, 866
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 4 cut(s) 91, 275, 815, 881
PkrI GCNGC 1 cut(s) 324
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PscI ACATGT 2 cut(s) 670, 866
Psp6I CCWGG 1 cut(s) 775
PspGI CCWGG 1 cut(s) 775
PspN4I GGNNCC 3 cut(s) 421, 438, 903
PsuI RGATCY 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 893
SaqAI TTAA 2 cut(s) 306, 629
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 5 cut(s) 187, 243, 301, 385, 544
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 1 cut(s) 777
SetI ASST 9 cut(s) 105, 170, 202, 425, 491, 567, 615, 745, 781
SfaNI GCATC 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 893
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SphI GCATGC 1 cut(s) 578
Sse9I AATT 3 cut(s) 134, 567, 793
SsiI CCGC 1 cut(s) 5
SspI AATATT 1 cut(s) 837
SspMI CTAG 2 cut(s) 249, 369
StyD4I CCNGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 18, 603, 895
TaqI TCGA 3 cut(s) 220, 821, 907
TasI AATT 3 cut(s) 134, 567, 793
TfiI GAWTC 4 cut(s) 91, 275, 815, 881
Tru1I TTAA 2 cut(s) 306, 629
Tru9I TTAA 2 cut(s) 306, 629
TseFI GTSAC 1 cut(s) 18
TseI GCWGC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 18
TspDTI ATGAA 6 cut(s) 72, 162, 284, 353, 636, 789
TspGWI ACGGA 1 cut(s) 227
XceI RCATGY 4 cut(s) 157, 578, 674, 870
XcmI CCANNNNNNNNNTGG 3 cut(s) 236, 724, 895
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 2 cut(s) 249, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.