Rw1G028060

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
55581378 .. 55583038
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G028060.1

Sequence Viewer

Length: 807 bp
ATGCTGATTGCAAAACTCCAACACAGGAACCTTGTCAGGATTTTAGGTTGTTGTGTTGAAGAAGAAGAGAAGATGATAATCTACGAATACTTGCCAAACAAAAGTTTGGACTTTTTCGTTTTTAATGAATCCAATCGAACACATTTAGATTGGAGGAGACGCTTTGAGATCATTTGTGGAATTACTAGAGGGATATTATATCTTCATCAAGATTCAAGATTAAGAATCATACACAGAGATCTAAAAGCGAGTAATGTTCTGTTAGATGGTTCTATGAATCCCAAAATTGCAGATTTTGGTCTGGCAAGAATATTCGAGGGGGATCAAAGTGAAGCAAATACAAATCGCGTGGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGCGAGGACTCTTCTCAGTAAAGTCAGATGTATATAGCTTTGGGGTAATAGTATTAGAAATCATTACTGGTCAAAAGAATACTAGTCACCATCCCAGCTCAAGTATGGTTGAACATGTTTGGAACTCATGGAGAGAAGGTACTGCCTTAGAACTCGTTGATTCATCTCTCAGCGGATCATGCCCTGTCGATGAAGTTCTAAGATGCATCCAGATCGCCTTCTTGTGTTTACAAGAGCACGCCACTGACCGGCCAAACATGTCAGAAGTTCTTGTCATGCTGGGTAATGATGCAGCTCTTCCTGAACCAATGCGACCTCCATTTTTAAAGGAGAGAAGAAATAACAGTGAAGACTCGTCAAACCGTGAGAGAACTTATTCTGTAAATGAAGTGACACACACCACACAAGAAGCTCGCTAA

Protein Analysis

268

Amino Acids

30.71

Weight (kDa)

5.87

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 221 2.9e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 220 2.7e-35 Protein kinase domain
DUF3403 PF11883 225 - 268 1.6e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 348
AciI CCGC 1 cut(s) 561
AclWI GGATC 2 cut(s) 330, 571
AcoI YGGCCR 1 cut(s) 638
AfaI GTAC 1 cut(s) 529
AfiI CCNNNNNNNGG 1 cut(s) 636
AflIII ACRYGT 2 cut(s) 502, 645
AgsI TTSAA 3 cut(s) 59, 216, 500
AhlI ACTAGT 1 cut(s) 470
AluBI AGCT 4 cut(s) 426, 486, 683, 800
AluI AGCT 4 cut(s) 426, 486, 683, 800
Alw21I GWGCWC 1 cut(s) 627
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 2 cut(s) 330, 571
AoxI GGCC 1 cut(s) 638
ApeKI GCWGC 1 cut(s) 680
Asp700I GAANNNNTTC 1 cut(s) 763
AsuHPI GGTGA 2 cut(s) 366, 467
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 1 cut(s) 692
BccI CCATC 2 cut(s) 260, 486
BcgI CGANNNNNNTGC 2 cut(s) 583, 617
BcoDI GTCTC 1 cut(s) 151
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 2 cut(s) 186, 471
BglII AGATCT 1 cut(s) 238
BisI GCNGC 1 cut(s) 681
BlsI GCNGC 1 cut(s) 682
BmiI GGNNCC 1 cut(s) 29
BmsI GCATC 3 cut(s) 581, 603, 667
BpiI GAAGAC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 77
BseGI GGATG 2 cut(s) 478, 594
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 417, 571
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 692
BseYI CCCAGC 2 cut(s) 482, 667
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 627
BsiSI CCGG 1 cut(s) 637
BslI CCNNNNNNNGG 1 cut(s) 636
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsnI GGCC 1 cut(s) 640
Bsp1286I GDGCHC 1 cut(s) 627
Bsp143I GATC 5 cut(s) 168, 238, 322, 563, 600
BspACI CCGC 1 cut(s) 561
BspANI GGCC 1 cut(s) 640
BspCNI CTCAG 2 cut(s) 416, 570
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 2 cut(s) 330, 571
BspQI GCTCTTC 1 cut(s) 690
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 636
BsrI ACTGG 1 cut(s) 460
BssAI RCCGGY 1 cut(s) 636
BssMI GATC 5 cut(s) 168, 238, 322, 563, 600
Bst4CI ACNGT 2 cut(s) 734, 752
Bst6I CTCTTC 3 cut(s) 60, 404, 690
BstC8I GCNNGC 2 cut(s) 627, 802
BstDEI CTNAG 4 cut(s) 403, 535, 557, 587
BstF5I GGATG 2 cut(s) 478, 594
BstFNI CGCG 1 cut(s) 348
BstKTI GATC 5 cut(s) 171, 241, 325, 566, 603
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 5 cut(s) 168, 238, 322, 563, 600
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNSI RCATGY 2 cut(s) 506, 649
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 692
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 1 cut(s) 640
BtsCI GGATG 2 cut(s) 478, 594
BtsIMutI CAGTG 2 cut(s) 630, 739
Cac8I GCNNGC 2 cut(s) 627, 802
Cfr10I RCCGGY 1 cut(s) 636
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 528
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 5 cut(s) 503, 516, 567, 646, 664
CviJI RGCY 5 cut(s) 426, 486, 640, 683, 800
CviKI_1 RGCY 5 cut(s) 426, 486, 640, 683, 800
CviQI GTAC 1 cut(s) 528
DdeI CTNAG 4 cut(s) 403, 535, 557, 587
DpnI GATC 5 cut(s) 170, 240, 324, 565, 602
DpnII GATC 5 cut(s) 168, 238, 322, 563, 600
DraI TTTAAA 1 cut(s) 714
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 3 cut(s) 60, 404, 690
EarI CTCTTC 3 cut(s) 60, 404, 690
EcoT22I ATGCAT 1 cut(s) 596
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 5 cut(s) 506, 519, 570, 649, 667
FatI CATG 5 cut(s) 502, 515, 566, 645, 663
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 681
FokI GGATG 2 cut(s) 465, 581
Fsp4HI GCNGC 1 cut(s) 681
FspBI CTAG 2 cut(s) 186, 471
GluI GCNGC 1 cut(s) 681
GsaI CCCAGC 2 cut(s) 486, 671
HaeIII GGCC 1 cut(s) 640
HapII CCGG 1 cut(s) 637
HgaI GACGC 1 cut(s) 168
Hin1II CATG 5 cut(s) 506, 519, 570, 649, 667
HinfI GANTC 7 cut(s) 128, 212, 225, 277, 396, 548, 740
HpaII CCGG 1 cut(s) 637
HphI GGTGA 2 cut(s) 366, 467
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 2 cut(s) 415, 652
Hpy188III TCNNGA 5 cut(s) 37, 209, 216, 598, 689
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 518, 616
HpyCH4III ACNGT 2 cut(s) 734, 752
HpyCH4V TGCA 5 cut(s) 11, 290, 386, 594, 680
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 4 cut(s) 403, 535, 557, 587
Hsp92II CATG 5 cut(s) 506, 519, 570, 649, 667
Kzo9I GATC 5 cut(s) 168, 238, 322, 563, 600
LguI GCTCTTC 1 cut(s) 690
Lsp1109I GCAGC 1 cut(s) 692
LweI GCATC 3 cut(s) 581, 603, 667
MaeI CTAG 2 cut(s) 186, 471
MaeIII GTNAC 3 cut(s) 372, 473, 778
MalI GATC 5 cut(s) 170, 240, 324, 565, 602
MboI GATC 5 cut(s) 168, 238, 322, 563, 600
MboII GAAGA 9 cut(s) 71, 74, 77, 82, 194, 391, 677, 735, 749
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 627
MluCI AATT 2 cut(s) 180, 285
MlyI GAGTC 2 cut(s) 390, 734
MmeI TCCRAC 2 cut(s) 43, 334
MnlI CCTC 5 cut(s) 147, 182, 310, 386, 714
Mph1103I ATGCAT 1 cut(s) 596
MroXI GAANNNNTTC 1 cut(s) 763
MseI TTAA 3 cut(s) 123, 221, 713
MspA1I CMGCKG 1 cut(s) 561
MspI CCGG 1 cut(s) 637
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 1 cut(s) 567
NdeI CATATG 1 cut(s) 361
NdeII GATC 5 cut(s) 168, 238, 322, 563, 600
NlaIII CATG 5 cut(s) 506, 519, 570, 649, 667
NlaIV GGNNCC 1 cut(s) 29
NmuCI GTSAC 3 cut(s) 372, 473, 778
NsiI ATGCAT 1 cut(s) 596
NspI RCATGY 2 cut(s) 506, 649
PciI ACATGT 2 cut(s) 502, 645
PciSI GCTCTTC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 763
PfeI GAWTC 5 cut(s) 128, 212, 225, 277, 548
PkrI GCNGC 1 cut(s) 682
PleI GAGTC 2 cut(s) 390, 734
PpsI GAGTC 2 cut(s) 390, 734
PscI ACATGT 2 cut(s) 502, 645
PspFI CCCAGC 2 cut(s) 482, 667
PspN4I GGNNCC 1 cut(s) 29
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 529
RsaNI GTAC 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 3 cut(s) 123, 221, 713
SatI GCNGC 1 cut(s) 681
Sau3AI GATC 5 cut(s) 168, 238, 322, 563, 600
SchI GAGTC 2 cut(s) 390, 734
SduI GDGCHC 1 cut(s) 627
SetI ASST 8 cut(s) 33, 49, 428, 488, 529, 685, 706, 802
SfaNI GCATC 3 cut(s) 581, 603, 667
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 2 cut(s) 180, 285
SsiI CCGC 1 cut(s) 561
SspI AATATT 1 cut(s) 312
SspMI CTAG 2 cut(s) 186, 471
TaaI ACNGT 2 cut(s) 734, 752
TaqI TCGA 3 cut(s) 136, 315, 576
TasI AATT 2 cut(s) 180, 285
TfiI GAWTC 5 cut(s) 128, 212, 225, 277, 548
Tru1I TTAA 3 cut(s) 123, 221, 713
Tru9I TTAA 3 cut(s) 123, 221, 713
TscAI CASTG 2 cut(s) 637, 739
TseFI GTSAC 3 cut(s) 372, 473, 778
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 3 cut(s) 372, 473, 778
TspDTI ATGAA 6 cut(s) 141, 194, 290, 540, 594, 789
TspRI CASTG 2 cut(s) 637, 739
XceI RCATGY 2 cut(s) 506, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 763
XspI CTAG 2 cut(s) 186, 471
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.