Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

14336618 .. 14338002

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGCTCCCGCTCTTCAACATAACCATAATAGCTAGTGCAACAGATAACTTTTCAGATGATATGAAGCTTGGAGAAGGTGGCTTTGGACCTGTTTACAGGGGGACACTAACAGATGGAAAAGAATTTGCTGTGAAGAGGCTTCCAAGCAGTTCTGGTCAAGGATTTAACGAGTTTATGAATGAAATAGTAATGATTGCCAAACTTCAGCACCGAAATCTTGTAAAGATTCTTGGTTGTTGCGTGCAAGAAGAAGAGACAAGAAGAGAAAATGCTGTTGTACGAATACATGCCCAACAGAAGCCTAGACAACTTCATTTTTGTGGCTACATGGTACCTGAATATGCTGCTGATGGGATATTTTCTGTTAAATCCGATGTCTTTAGCTTCGGTATATTGGTGCCGGAGATTATAAGTGGAAGGAGAAACAAGGGATTTTATCATCCAGACCACAACAATAATCTTATCGGAAATGGTTGGAGATTGTGGAACGTAGGAAGGCCTTTAGAATTGACTGATTCATGGTTAGAGAGCTCATGTAATCTATCTGAAGTGTTACGTTGCGTCCAAGTTAGTCTTTTGTGCGTGCAACATCATCCTGAGGATCGGCCAAGCATGGCGTCTGTGGTTATAATGTTGGGAAGTGATATTGCATTATCTCAACCTAAACAACCTGGCATGGCTTCTTTCTGGAAAAGGAACATGAAGCAGTCCATTTCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

242

Amino Acids

27.07

Weight (kDa)

7.04

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 85	5e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 86	4.6e-11	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	107 - 210	6.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	413, 632
Acc65I	GGTACC	1 cut(s)	334
AccB1I	GGYRCC	2 cut(s)	334, 400
AccBSI	CCGCTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	1 cut(s)	612
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	2 cut(s)	191, 570
AcyI	GRCGYC	1 cut(s)	620
AfaI	GTAC	2 cut(s)	282, 336
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	5 cut(s)	7, 35, 70, 387, 534
AluI	AGCT	5 cut(s)	7, 35, 70, 387, 534
Alw21I	GWGCWC	2 cut(s)	9, 536
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	612
AoxI	GGCC	2 cut(s)	500, 608
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	125
Asp718I	GGTACC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
AxyI	CCTNAGG	1 cut(s)	600
BanI	GGYRCC	2 cut(s)	334, 400
BanII	GRGCYC	2 cut(s)	9, 536
Bbv12I	GWGCWC	2 cut(s)	9, 536
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	110, 347
BciT130I	CCWGG	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	2 cut(s)	36, 306
BfmI	CTRYAG	1 cut(s)	722
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	336, 402
BmrFI	CCNGG	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	620
Bse21I	CCTNAGG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	675
BseGI	GGATG	2 cut(s)	442, 595
BseMII	CTCAG	1 cut(s)	591
BseXI	GCAGC	1 cut(s)	334
BshFI	GGCC	2 cut(s)	502, 610
BshNI	GGYRCC	2 cut(s)	334, 400
BsiHKAI	GWGCWC	2 cut(s)	9, 536
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	502, 610
Bsp1286I	GDGCHC	2 cut(s)	9, 536
Bsp143I	GATC	1 cut(s)	604
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	502, 610
BspCNI	CTCAG	1 cut(s)	592
BspLI	GGNNCC	2 cut(s)	336, 402
BspPI	GGATC	1 cut(s)	612
BspQI	GCTCTTC	1 cut(s)	20
BspT107I	GGYRCC	2 cut(s)	334, 400
BsrBI	CCGCTC	1 cut(s)	13
BssMI	GATC	1 cut(s)	604
BssNI	GRCGYC	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	675
Bst6I	CTCTTC	4 cut(s)	20, 131, 249, 259
BstACI	GRCGYC	1 cut(s)	620
BstC8I	GCNNGC	2 cut(s)	245, 587
BstDEI	CTNAG	1 cut(s)	600
BstF5I	GGATG	2 cut(s)	442, 595
BstKTI	GATC	1 cut(s)	607
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	604
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	1 cut(s)	722
BstV1I	GCAGC	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	600
BsuRI	GGCC	2 cut(s)	502, 610
BtsCI	GGATG	2 cut(s)	442, 595
Cac8I	GCNNGC	2 cut(s)	245, 587
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	2 cut(s)	553, 609
Csp6I	GTAC	2 cut(s)	281, 335
CviAII	CATG	7 cut(s)	290, 331, 522, 537, 616, 679, 703
CviQI	GTAC	2 cut(s)	281, 335
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	606
DpnII	GATC	1 cut(s)	604
EaeI	YGGCCR	1 cut(s)	608
Eam1104I	CTCTTC	4 cut(s)	20, 131, 249, 259
EarI	CTCTTC	4 cut(s)	20, 131, 249, 259
Ecl136II	GAGCTC	2 cut(s)	7, 534
Eco147I	AGGCCT	1 cut(s)	502
Eco24I	GRGCYC	2 cut(s)	9, 536
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	2 cut(s)	7, 534
Eco57I	CTGAAG	2 cut(s)	191, 570
Eco81I	CCTNAGG	1 cut(s)	600
EcoICRI	GAGCTC	2 cut(s)	7, 534
EcoRII	CCWGG	1 cut(s)	673
EcoT38I	GRGCYC	2 cut(s)	9, 536
FaeI	CATG	7 cut(s)	293, 334, 525, 540, 619, 682, 706
FalI	AAGNNNNNCTT	2 cut(s)	561, 593
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	7 cut(s)	289, 330, 521, 536, 615, 678, 702
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	429, 582
FriOI	GRGCYC	2 cut(s)	9, 536
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	2 cut(s)	36, 306
GluI	GCNGC	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	502, 610
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	2 cut(s)	553, 609
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	7 cut(s)	293, 334, 525, 540, 619, 682, 706
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	2 cut(s)	229, 518
HpaII	CCGG	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	58, 376, 470, 550
Hpy188III	TCNNGA	3 cut(s)	446, 599, 691
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	71, 414, 492
HpyCH4IV	ACGT	2 cut(s)	492, 559
HpyCH4V	TGCA	4 cut(s)	41, 247, 589, 653
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	2 cut(s)	492, 559
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	7 cut(s)	293, 334, 525, 540, 619, 682, 706
KpnI	GGTACC	1 cut(s)	338
Kzo9I	GATC	1 cut(s)	604
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	2 cut(s)	4, 12
Lsp1109I	GCAGC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	36, 306
MaeII	ACGT	2 cut(s)	492, 559
MaeIII	GTNAC	1 cut(s)	555
MalI	GATC	1 cut(s)	606
MbiI	CCGCTC	1 cut(s)	13
MboI	GATC	1 cut(s)	604
MboII	GAAGA	5 cut(s)	7, 148, 263, 266, 276
MhlI	GDGCHC	2 cut(s)	9, 536
MluCI	AATT	2 cut(s)	125, 509
MmeI	TCCRAC	1 cut(s)	458
MnlI	CCTC	2 cut(s)	132, 595
MseI	TTAA	2 cut(s)	168, 369
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
NdeII	GATC	1 cut(s)	604
NlaIII	CATG	7 cut(s)	293, 334, 525, 540, 619, 682, 706
NlaIV	GGNNCC	2 cut(s)	336, 402
NspI	RCATGY	1 cut(s)	293
PceI	AGGCCT	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	20
PfeI	GAWTC	2 cut(s)	229, 518
PkrI	GCNGC	1 cut(s)	349
PsiI	TTATAA	2 cut(s)	413, 632
Psp124BI	GAGCTC	2 cut(s)	9, 536
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	2 cut(s)	336, 402
PspPI	GGNCC	1 cut(s)	89
RsaI	GTAC	2 cut(s)	282, 336
RsaNI	GTAC	2 cut(s)	281, 335
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	2 cut(s)	9, 536
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	168, 369
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	1 cut(s)	604
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	2 cut(s)	9, 536
SfcI	CTRYAG	1 cut(s)	722
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	2 cut(s)	125, 509
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	36, 306
SstI	GAGCTC	2 cut(s)	9, 536
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	673
TaiI	ACGT	2 cut(s)	495, 562
TasI	AATT	2 cut(s)	125, 509
TfiI	GAWTC	2 cut(s)	229, 518
Tru1I	TTAA	2 cut(s)	168, 369
Tru9I	TTAA	2 cut(s)	168, 369
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	6 cut(s)	80, 194, 198, 305, 510, 719
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	293
XspI	CTAG	2 cut(s)	36, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.