RLG00000032924

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000201
Physical Location & Seq
Forward (+)
20919793 .. 20920450
658 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032924

Sequence Viewer

Length: 366 bp
ATGAAACTAAAGCAGAAACGGATAAAGTGGTCGGGACATAGTAAGTTGTTCAAAACAAGTAATGCATGGAACTTACACACAGAAGGCAGGTCCATTGAATTGCTGGCTACATCAGTAGGGGACTCCATTAATCTACAAGAAGTTCTGCGAACGATTCATGTGGGTCTTTTATGTGTTCAGCAAAATCCACAAGACCGGTCAAGCATGTCAGCTGCAGTACTAATGTTAAGTGGCGAAGGTGTGCTACCTGTACCTCAGAAACCTGGTTTTTATAATGAGAGGGCTCTAACTGAACTCCAAGTCCAGTCTTCTTCACAATCATGTTCAGTTAATACACTCACTTCTAGCCTATTCGTGCCTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

122

Amino Acids

13.37

Weight (kDa)

9.62

Isoelectric Point (pI)

67.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 79 - 121 7.8e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 78
AfaI GTAC 2 cut(s) 219, 252
AgeI ACCGGT 1 cut(s) 195
AgsI TTSAA 2 cut(s) 52, 98
AjnI CCWGG 1 cut(s) 262
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 212
AseI ATTAAT 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 90
AvaII GGWCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 286
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 78
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmcAI AGTACT 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 199
BshTI ACCGGT 1 cut(s) 195
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 2 cut(s) 48, 134
BsmFI GGGAC 2 cut(s) 48, 134
Bsp1286I GDGCHC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 255
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 1 cut(s) 300
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 2 cut(s) 218, 251
CspAI ACCGGT 1 cut(s) 195
CviAII CATG 4 cut(s) 66, 158, 205, 321
CviJI RGCY 4 cut(s) 107, 212, 284, 348
CviKI_1 RGCY 4 cut(s) 107, 212, 284, 348
CviQI GTAC 2 cut(s) 218, 251
DdeI CTNAG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 4 cut(s) 69, 161, 208, 324
FaiI YATR 7 cut(s) 39, 67, 159, 172, 206, 273, 322
FaqI GGGAC 2 cut(s) 48, 134
FatI CATG 4 cut(s) 65, 157, 204, 320
Fnu4HI GCNGC 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 345
GluI GCNGC 1 cut(s) 213
HapII CCGG 1 cut(s) 196
Hin1II CATG 4 cut(s) 69, 161, 208, 324
HinfI GANTC 2 cut(s) 122, 154
HpaII CCGG 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 33
HpyAV CCTTC 2 cut(s) 77, 230
HpyCH4V TGCA 2 cut(s) 65, 215
HpyF3I CTNAG 1 cut(s) 255
Hsp92II CATG 4 cut(s) 69, 161, 208, 324
LpnPI CCDG 7 cut(s) 73, 89, 209, 249, 261, 276, 317
Lsp1109I GCAGC 1 cut(s) 199
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 1 cut(s) 345
MboII GAAGA 2 cut(s) 300, 303
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 2 cut(s) 264, 273
Mph1103I ATGCAT 1 cut(s) 67
MseI TTAA 4 cut(s) 129, 227, 330, 364
MslI CAYNNNNRTG 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
NlaIII CATG 4 cut(s) 69, 161, 208, 324
NsiI ATGCAT 1 cut(s) 67
NspI RCATGY 1 cut(s) 208
PfeI GAWTC 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 195
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PshBI ATTAAT 1 cut(s) 129
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 219, 252
RsaNI GTAC 2 cut(s) 218, 251
RseI CAYNNNNRTG 1 cut(s) 319
SaqAI TTAA 4 cut(s) 129, 227, 330, 364
SatI GCNGC 1 cut(s) 213
Sau96I GGNCC 1 cut(s) 90
ScaI AGTACT 1 cut(s) 219
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 286
SetI ASST 6 cut(s) 92, 214, 241, 250, 256, 265
SexAI ACCWGGT 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 319
Sse9I AATT 1 cut(s) 98
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 262
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 217
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 4 cut(s) 129, 227, 330, 364
Tru9I TTAA 4 cut(s) 129, 227, 330, 364
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 17, 146
TspGWI ACGGA 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 90
VspI ATTAAT 1 cut(s) 129
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 345
ZrmI AGTACT 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.