Rmu_sc0010714.1_g000004

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010714.1
OG0000201
Physical Location & Seq
Reverse (-)
4866 .. 5572
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010714.1_g000004.1.cds

Sequence Viewer

Length: 540 bp
atgaacccaaagatctcagattttggactggccaaaatgtttggggaagaccaaattcaagcaagaacaaacagagtgattggaacttatggctatatgtcacccgaatatgcaatggaagggcgatattcaacaaaatctgatgtttttagctatggtgtcttactgctagagatcattagtggcaaaagagccactgtatacgatactcaagatccctccccaaatttaattggacagatttgggatatgtggacagagaatacagcattaagtattgttgatccatctctgggtcagtcctatcctgctcatgaggtcttaagatgcatccagattgggctgttgtgtgtgcaagaatctgcatcggatcggccatccatgtcggcagtcgtctccatgttgggtaacgaaacacctcttcattctcctaagaagcctgcattcatattacagtctagcaatccaaactcagcagcatcaagtggagcacctgcttcgctaaatgatctaaccataactatgcctgaagcacgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

4.95

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 1 cut(s) 502
AccI GTMKAC 1 cut(s) 201
AclWI GGATC 3 cut(s) 209, 278, 378
AcoI YGGCCR 2 cut(s) 30, 374
AcsI RAATTY 2 cut(s) 54, 226
AfiI CCNNNNNNNGG 1 cut(s) 293
AflII CTTAAG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 59, 132
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 3 cut(s) 209, 278, 378
AoxI GGCC 2 cut(s) 30, 374
ApeKI GCWGC 1 cut(s) 476
ApoI RAATTY 2 cut(s) 54, 226
AsuHPI GGTGA 1 cut(s) 93
BalI TGGCCA 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 488
BccI CCATC 2 cut(s) 295, 385
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 2 cut(s) 170, 459
BfrI CTTAAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 502
BglII AGATCT 1 cut(s) 12
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
BmsI GCATC 4 cut(s) 317, 339, 374, 488
BpiI GAAGAC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 120
BseGI GGATG 2 cut(s) 330, 377
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 30, 486
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 488
BshFI GGCC 2 cut(s) 32, 376
BsiHKAI GWGCWC 1 cut(s) 493
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 32, 376
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 6 cut(s) 12, 174, 214, 283, 370, 508
BspANI GGCC 2 cut(s) 32, 376
BspCNI CTCAG 2 cut(s) 29, 485
BspHI TCATGA 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 3 cut(s) 209, 278, 378
BspTI CTTAAG 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 33
BssMI GATC 6 cut(s) 12, 174, 214, 283, 370, 508
BssNAI GTATAC 1 cut(s) 202
Bst1107I GTATAC 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 199, 456
Bst6I CTCTTC 1 cut(s) 426
BstAFI CTTAAG 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 441, 535
BstDEI CTNAG 3 cut(s) 16, 432, 472
BstF5I GGATG 2 cut(s) 330, 377
BstKTI GATC 6 cut(s) 15, 177, 217, 286, 373, 511
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 6 cut(s) 12, 174, 214, 283, 370, 508
BstV1I GCAGC 1 cut(s) 488
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 2 cut(s) 12, 214
BstYI RGATCY 2 cut(s) 12, 214
BstZ17I GTATAC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 32, 376
BtsCI GGATG 2 cut(s) 330, 377
BtsIMutI CAGTG 1 cut(s) 195
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 2 cut(s) 441, 535
CciI TCATGA 1 cut(s) 313
CviAII CATG 3 cut(s) 314, 382, 400
CviJI RGCY 7 cut(s) 32, 93, 153, 194, 343, 376, 439
CviKI_1 RGCY 7 cut(s) 32, 93, 153, 194, 343, 376, 439
DdeI CTNAG 3 cut(s) 16, 432, 472
DpnI GATC 6 cut(s) 14, 176, 216, 285, 372, 510
DpnII GATC 6 cut(s) 12, 174, 214, 283, 370, 508
EaeI YGGCCR 2 cut(s) 30, 374
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 332
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 3 cut(s) 317, 385, 403
FatI CATG 3 cut(s) 313, 381, 399
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 2 cut(s) 317, 364
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 2 cut(s) 170, 459
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 2 cut(s) 32, 376
Hin1II CATG 3 cut(s) 317, 385, 403
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 93
Hpy166II GTNNAC 2 cut(s) 202, 255
Hpy188I TCNGA 3 cut(s) 19, 142, 370
Hpy188III TCNNGA 3 cut(s) 212, 314, 334
Hpy8I GTNNAC 2 cut(s) 202, 255
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 199, 456
HpyCH4V TGCA 5 cut(s) 113, 330, 355, 365, 443
HpyF3I CTNAG 3 cut(s) 16, 432, 472
Hsp92II CATG 3 cut(s) 317, 385, 403
Kzo9I GATC 6 cut(s) 12, 174, 214, 283, 370, 508
LmnI GCTCC 1 cut(s) 488
LpnPI CCDG 6 cut(s) 14, 278, 321, 347, 453, 507
Lsp1109I GCAGC 1 cut(s) 488
LweI GCATC 4 cut(s) 317, 339, 374, 488
MaeI CTAG 2 cut(s) 170, 459
MaeIII GTNAC 2 cut(s) 99, 407
MalI GATC 6 cut(s) 14, 176, 216, 285, 372, 510
MboI GATC 6 cut(s) 12, 174, 214, 283, 370, 508
MboII GAAGA 2 cut(s) 59, 413
MflI RGATCY 2 cut(s) 12, 214
MhlI GDGCHC 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 3 cut(s) 54, 226, 231
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 3 cut(s) 229, 310, 429
Mox20I TGGCCA 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 332
MscI TGGCCA 1 cut(s) 32
MseI TTAA 3 cut(s) 230, 272, 323
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 322
Mva1269I GAATGC 1 cut(s) 443
NdeII GATC 6 cut(s) 12, 174, 214, 283, 370, 508
NlaIII CATG 3 cut(s) 317, 385, 403
NmuCI GTSAC 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 332
PagI TCATGA 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 502
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 478
PsuI RGATCY 2 cut(s) 12, 214
RseI CAYNNNNRTG 1 cut(s) 521
SaqAI TTAA 3 cut(s) 230, 272, 323
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 6 cut(s) 12, 174, 214, 283, 370, 508
SduI GDGCHC 1 cut(s) 493
SetI ASST 4 cut(s) 155, 321, 421, 496
SfaNI GCATC 4 cut(s) 317, 339, 374, 488
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 2 cut(s) 210, 322
SmoI CTYRAG 2 cut(s) 210, 322
Sse9I AATT 3 cut(s) 54, 226, 231
SspMI CTAG 2 cut(s) 170, 459
TaaI ACNGT 2 cut(s) 199, 456
TasI AATT 3 cut(s) 54, 226, 231
TfiI GAWTC 1 cut(s) 359
Tru1I TTAA 3 cut(s) 230, 272, 323
Tru9I TTAA 3 cut(s) 230, 272, 323
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 3 cut(s) 17, 413, 436
TspRI CASTG 1 cut(s) 202
Vha464I CTTAAG 1 cut(s) 322
XapI RAATTY 2 cut(s) 54, 226
XmiI GTMKAC 1 cut(s) 201
XspI CTAG 2 cut(s) 170, 459
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.