Rh5AG250500

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000201
Physical Location & Seq
Reverse (-)
31946460 .. 31948710
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG250500.1

Sequence Viewer

Length: 666 bp
ATGGCCACTCTTTCTTTCACCTTCATTGGAATTTACATGTCCCTTTCTTTCTTCAACACTTCAACTGCAGCAGCAGCTGGTAGCACCTTGGTTTTTAAAAATGGCAGCTTTGAGTTGGGTTCTGTCAGTCCTCAAGATGCTATTTTTCAGAGGAGTCTTTTAGCATCAACTCCTCCAGGAGATATATGTGACACTGATGGCCGATGTGGCCCGAATGGACTGTGTGACATTAGTGACTCACAAGTTTGCAGTTGCTTAGAGGGATTCAAGCCCAAAGAAGAAGAGAACTGGAGCTTTGGCGAAAACTCGGATGGTTGTGTGCGTGTTACTCCATTGATGTGCCAAAGTAAGGATGATGGGTTTGTGAAATATGCCGGGGTCAAAGTGCCGGCGAGCATAGACTCTAGGGTGAACCAGAGCACGAGTCTCGAGGAATGTAAGGAGAGTTGCTTTAACAACTGTTCTTGTATGGCTTATGCAAGCTCTGAAGTCAATGGCTGCACCATCTGGTTTGGTGATCTTTTCAACATTAGAAAGCTTCCACATGGAGGGAAGGATCTGTATGTTCGAGTGCCTACTTCCGAATTGAGTACGCAAGAAAACTGCAATTATTTCCCCTGCTTTGTTATTTCAATGCTCATATTTTTTATTGTAGCTGTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

221

Amino Acids

24.0

Weight (kDa)

4.57

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 57 - 92 4.3e-09 S-locus glycoprotein domain
PAN_2 PF08276 114 - 177 5e-18 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 564
AcoI YGGCCR 2 cut(s) 3, 199
AcsI RAATTY 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 507
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 2 cut(s) 349, 548
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 5 cut(s) 55, 63, 268, 526, 633
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 6 cut(s) 77, 108, 294, 483, 538, 656
AluI AGCT 6 cut(s) 77, 108, 294, 483, 538, 656
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 1 cut(s) 564
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 3 cut(s) 3, 199, 208
ApeKI GCWGC 5 cut(s) 68, 71, 74, 105, 498
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 3 cut(s) 10, 421, 527
AvaI CYCGRG 1 cut(s) 428
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 5 cut(s) 80, 83, 86, 117, 485
BccI CCATC 4 cut(s) 191, 305, 350, 512
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 5 cut(s) 69, 72, 75, 106, 499
BlsI GCNGC 5 cut(s) 70, 73, 76, 107, 500
Bme1390I CCNGG 2 cut(s) 177, 376
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 209
BmrFI CCNGG 2 cut(s) 177, 376
BmsI GCATC 2 cut(s) 127, 173
BpmI CTGGAG 2 cut(s) 159, 310
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 87, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 548
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 87, 375
BseGI GGATG 2 cut(s) 316, 358
BseLI CCNNNNNNNGG 2 cut(s) 349, 548
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 2 cut(s) 162, 166
BseXI GCAGC 5 cut(s) 80, 83, 86, 117, 485
BsgI GTGCAG 1 cut(s) 484
BshFI GGCC 3 cut(s) 5, 201, 210
BsiHKAI GWGCWC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 375, 389
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 349, 548
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 5, 201, 210
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 2 cut(s) 517, 556
BspANI GGCC 3 cut(s) 5, 201, 210
BspMAI CTGCAG 1 cut(s) 70
BspPI GGATC 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 87, 375
BssMI GATC 2 cut(s) 517, 556
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 222, 461
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 390, 394, 481
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 2 cut(s) 316, 358
BstKTI GATC 2 cut(s) 520, 559
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 2 cut(s) 517, 556
BstMWI GCNNNNNNNGC 2 cut(s) 74, 207
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 175, 374
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 5 cut(s) 80, 83, 86, 117, 485
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuRI GGCC 3 cut(s) 5, 201, 210
BtsCI GGATG 2 cut(s) 316, 358
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 390, 394, 481
CaiI CAGNNNCTG 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 209
Csp6I GTAC 1 cut(s) 591
CviAII CATG 2 cut(s) 37, 545
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 1 cut(s) 256
DpnI GATC 2 cut(s) 519, 558
DpnII GATC 2 cut(s) 517, 556
DraI TTTAAA 1 cut(s) 97
EaeI YGGCCR 2 cut(s) 3, 199
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 507
Eco88I CYCGRG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 40, 548
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 36, 544
Fnu4HI GCNGC 5 cut(s) 69, 72, 75, 106, 499
FokI GGATG 2 cut(s) 323, 365
Fsp4HI GCNGC 5 cut(s) 69, 72, 75, 106, 499
FspBI CTAG 1 cut(s) 405
GluI GCNGC 5 cut(s) 69, 72, 75, 106, 499
GsuI CTGGAG 2 cut(s) 159, 310
HaeIII GGCC 3 cut(s) 5, 201, 210
HapII CCGG 2 cut(s) 375, 389
Hin1II CATG 2 cut(s) 40, 548
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 5 cut(s) 154, 236, 264, 401, 424
HpaII CCGG 2 cut(s) 375, 389
HphI GGTGA 3 cut(s) 10, 421, 527
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 4 cut(s) 150, 310, 487, 583
Hpy188III TCNNGA 2 cut(s) 134, 428
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 31, 547
HpyCH4III ACNGT 2 cut(s) 222, 461
HpyCH4V TGCA 5 cut(s) 68, 249, 479, 501, 606
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 207
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 2 cut(s) 40, 548
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 2 cut(s) 517, 556
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 9 cut(s) 63, 162, 189, 274, 388, 402, 428, 493, 631
Lsp1109I GCAGC 5 cut(s) 80, 83, 86, 117, 485
LweI GCATC 2 cut(s) 127, 173
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 4 cut(s) 188, 224, 233, 325
MalI GATC 2 cut(s) 519, 558
MboI GATC 2 cut(s) 517, 556
MboII GAAGA 3 cut(s) 43, 290, 293
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 30, 584, 607
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 163, 230, 395, 433
MnlI CCTC 6 cut(s) 141, 144, 183, 253, 424, 542
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 388
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 96, 453, 664
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 375, 389
MspR9I CCNGG 2 cut(s) 177, 376
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 74, 207
NaeI GCCGGC 1 cut(s) 390
NciI CCSGG 1 cut(s) 376
NdeII GATC 2 cut(s) 517, 556
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 2 cut(s) 40, 548
NmuCI GTSAC 3 cut(s) 188, 224, 233
NspI RCATGY 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 428
PciI ACATGT 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 5 cut(s) 70, 73, 76, 107, 500
PleI GAGTC 4 cut(s) 162, 230, 395, 432
PpsI GAGTC 4 cut(s) 162, 230, 395, 432
PscI ACATGT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 1 cut(s) 209
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 3 cut(s) 96, 453, 664
SatI GCNGC 5 cut(s) 69, 72, 75, 106, 499
Sau3AI GATC 2 cut(s) 517, 556
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 4 cut(s) 163, 230, 395, 433
ScrFI CCNGG 2 cut(s) 177, 376
SduI GDGCHC 1 cut(s) 422
SetI ASST 8 cut(s) 23, 79, 89, 110, 296, 485, 540, 658
SfaNI GCATC 2 cut(s) 127, 173
SfcI CTRYAG 1 cut(s) 66
SfiI GGCCNNNNNGGCC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 428
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 132, 428
SmoI CTYRAG 2 cut(s) 132, 428
Sse9I AATT 3 cut(s) 30, 584, 607
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 175, 374
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 222, 461
TaqI TCGA 2 cut(s) 429, 568
TasI AATT 3 cut(s) 30, 584, 607
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 96, 453, 664
Tru9I TTAA 3 cut(s) 96, 453, 664
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 3 cut(s) 188, 224, 233
TseI GCWGC 5 cut(s) 68, 71, 74, 105, 498
Tsp45I GTSAC 3 cut(s) 188, 224, 233
TspDTI ATGAA 1 cut(s) 13
TspRI CASTG 1 cut(s) 199
XapI RAATTY 1 cut(s) 30
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.