Rw3G023100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
28773790 .. 28774310
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023100.1

Sequence Viewer

Length: 405 bp
ATGAAAGGACTGTTTTCAATAAAGTCTGATGTATATAGTTTTGGTGTTTTACTGCTGGAAATCATTATTGGCAAAAAGAATGCTGGTTATTACCATGAGGAGTATCCTAATTCAAATTTGGATGGACATGCTGTGGAAGTCATTGATTCATCTATAGGTGAATCTTACCTTGTTAGTGAAGTTATAAGATACATTCAAATCGCGCTCTTGTGTGTGCAAGAATTTGCAACTGACCGACCAACCATGTCAGCAGTTGTTTCCATGTTAGGTAATGATGCAGCCCTTCCTTCACCAAGACGACCCGCATTTTTACTAAAGAGAACGAGTCCTAGTGGAGACCCATCCAGCAGCGAAGGAGCTAATTCAGTAAATGATGTCACATGTACAATTATAGAAGCTCGCTAA

Protein Analysis

134

Amino Acids

14.53

Weight (kDa)

4.92

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 89 4.2e-06 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 91 - 134 3.4e-09 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 185
AccII CGCG 1 cut(s) 203
AciI CCGC 1 cut(s) 303
AcsI RAATTY 2 cut(s) 115, 221
AfaI GTAC 1 cut(s) 385
AflIII ACRYGT 1 cut(s) 380
AgsI TTSAA 3 cut(s) 18, 114, 197
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 359, 398
AluI AGCT 2 cut(s) 359, 398
Alw26I GTCTC 1 cut(s) 330
ApeKI GCWGC 2 cut(s) 278, 348
ApoI RAATTY 2 cut(s) 115, 221
AspLEI GCGC 1 cut(s) 205
AsuHPI GGTGA 2 cut(s) 170, 282
BbvI GCAGC 2 cut(s) 290, 360
BccI CCATC 2 cut(s) 116, 349
BciVI GTATCC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 330
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 153
BfuI GTATCC 1 cut(s) 114
BisI GCNGC 2 cut(s) 279, 349
BlsI GCNGC 2 cut(s) 280, 350
BmsI GCATC 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 330
BseGI GGATG 2 cut(s) 127, 341
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 290, 360
Bsh1236I CGCG 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 1 cut(s) 85
Bso31I GGTCTC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 383
BspACI CCGC 1 cut(s) 303
BspFNI CGCG 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 383
BstC8I GCNNGC 1 cut(s) 400
BstF5I GGATG 2 cut(s) 127, 341
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 205
BstMAI GTCTC 1 cut(s) 330
BstNSI RCATGY 2 cut(s) 131, 384
BstSFI CTRYAG 1 cut(s) 153
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 290, 360
BsuI GTATCC 1 cut(s) 114
BtsCI GGATG 2 cut(s) 127, 341
Cac8I GCNNGC 1 cut(s) 400
CfoI GCGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 384
CviAII CATG 5 cut(s) 95, 128, 244, 262, 381
CviJI RGCY 3 cut(s) 281, 359, 398
CviKI_1 RGCY 3 cut(s) 281, 359, 398
CviQI GTAC 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 330
FaeI CATG 5 cut(s) 98, 131, 247, 265, 384
FatI CATG 5 cut(s) 94, 127, 243, 261, 380
FauI CCCGC 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 279, 349
FokI GGATG 2 cut(s) 134, 328
Fsp4HI GCNGC 2 cut(s) 279, 349
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 204
GluI GCNGC 2 cut(s) 279, 349
HhaI GCGC 1 cut(s) 205
Hin1II CATG 5 cut(s) 98, 131, 247, 265, 384
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 3 cut(s) 146, 161, 325
HphI GGTGA 2 cut(s) 170, 282
Hpy188I TCNGA 1 cut(s) 28
HpyAV CCTTC 3 cut(s) 293, 297, 347
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 3 cut(s) 217, 227, 278
Hsp92II CATG 5 cut(s) 98, 131, 247, 265, 384
HspAI GCGC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 3 cut(s) 41, 69, 358
Lsp1109I GCAGC 2 cut(s) 290, 360
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 376
MluCI AATT 5 cut(s) 109, 115, 221, 361, 387
MlyI GAGTC 1 cut(s) 334
MnlI CCTC 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 85
MvnI CGCG 1 cut(s) 203
NlaIII CATG 5 cut(s) 98, 131, 247, 265, 384
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 2 cut(s) 131, 384
PciI ACATGT 1 cut(s) 380
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 2 cut(s) 146, 161
PkrI GCNGC 2 cut(s) 280, 350
PleI GAGTC 1 cut(s) 333
PpsI GAGTC 1 cut(s) 333
PscI ACATGT 1 cut(s) 380
PsiI TTATAA 1 cut(s) 185
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SatI GCNGC 2 cut(s) 279, 349
SchI GAGTC 1 cut(s) 334
SetI ASST 5 cut(s) 160, 171, 271, 361, 400
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 153
Sse9I AATT 5 cut(s) 109, 115, 221, 361, 387
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 12
TaqII GACCGA 1 cut(s) 249
TasI AATT 5 cut(s) 109, 115, 221, 361, 387
TatI WGTACW 1 cut(s) 383
TfiI GAWTC 2 cut(s) 146, 161
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 278, 348
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 17, 138
XapI RAATTY 2 cut(s) 115, 221
XceI RCATGY 2 cut(s) 131, 384
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.