Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

20024858 .. 20025471

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG181000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGCCGTAGAAGGCAGGTCCATTGAACTTCTAGATCTATTGGTAGAGGACTCCAGCACTCTACATGAAGTTTTGCGATCGATTCATGTAGGTCTTTTTTGTGTGCAACAAAAACCACAAGATAGGCCAAGTATGCCAGCTGCTGTTCTAATATTGAGTTGTGAAGGTGCATCGCCTCAACCTCAGAAGCCTGGTTTTTTCAGTGAAAGGAATCTGACAGAACCTGAAGATTCTACAGATGAGGCTACAGAATGTTCAGCTAATGAACTCACTATTACACGAGTGGGGGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

99

Amino Acids

10.82

Weight (kDa)

4.5

Isoelectric Point (pI)

76.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3403	PF11883	60 - 99	1e-06	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	2 cut(s)	143, 263
AluI	AGCT	2 cut(s)	143, 263
AlwNI	CAGNNNCTG	2 cut(s)	146, 227
AoxI	GGCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	195
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	237, 249
BfuAI	ACCTGC	1 cut(s)	9
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	130
BshVI	ATCGAT	1 cut(s)	83
BsiEI	CGRYCG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	37, 80
BspANI	GGCC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	9
BssMI	GATC	2 cut(s)	37, 80
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	186
BstKTI	GATC	2 cut(s)	40, 83
BstMBI	GATC	2 cut(s)	37, 80
BstMCI	CGRYCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	2 cut(s)	237, 249
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
Bsu15I	ATCGAT	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	130
BsuTUI	ATCGAT	1 cut(s)	83
BtgZI	GCGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	9
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	2 cut(s)	146, 227
Cfr13I	GGNCC	1 cut(s)	21
ClaI	ATCGAT	1 cut(s)	83
CviAII	CATG	2 cut(s)	68, 89
CviJI	RGCY	7 cut(s)	8, 130, 143, 193, 248, 263, 293
CviKI_1	RGCY	7 cut(s)	8, 130, 143, 193, 248, 263, 293
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	2 cut(s)	39, 82
DpnII	GATC	2 cut(s)	37, 80
Eco24I	GRGCYC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	2 cut(s)	71, 92
FaiI	YATR	3 cut(s)	69, 90, 137
FatI	CATG	2 cut(s)	67, 88
Fnu4HI	GCNGC	1 cut(s)	144
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	71, 92
HinfI	GANTC	4 cut(s)	53, 85, 214, 233
Hpy188I	TCNGA	2 cut(s)	189, 219
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	8, 161
HpyCH4V	TGCA	2 cut(s)	109, 173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	71, 92
Kzo9I	GATC	2 cut(s)	37, 80
LpnPI	CCDG	6 cut(s)	4, 70, 153, 180, 207, 240
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	35
MalI	GATC	2 cut(s)	39, 82
MboI	GATC	2 cut(s)	37, 80
MboII	GAAGA	1 cut(s)	242
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	295
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	4 cut(s)	43, 189, 195, 238
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	37, 80
NlaIII	CATG	2 cut(s)	71, 92
PfeI	GAWTC	3 cut(s)	85, 214, 233
PkrI	GCNGC	1 cut(s)	145
Ple19I	CGATCG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	21
PstNI	CAGNNNCTG	2 cut(s)	146, 227
PsuI	RGATCY	1 cut(s)	37
PvuI	CGATCG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	143
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	37, 80
Sau96I	GGNCC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	7 cut(s)	23, 97, 145, 172, 187, 229, 265
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	2 cut(s)	237, 249
SinI	GGWCC	1 cut(s)	21
SspI	AATATT	1 cut(s)	156
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	193
TaqI	TCGA	2 cut(s)	83, 295
TfiI	GAWTC	3 cut(s)	85, 214, 233
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	77, 84, 282
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	21
XbaI	TCTAGA	1 cut(s)	34
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.