Rh5CG203300

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Reverse (-)
20503832 .. 20506435
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG203300.1

Sequence Viewer

Length: 309 bp
ATGGCATGGAAGCTGTACACACAAGGCAGGTTCATTGAACTGCTTGATACATCAGTAGGGGACTCGACTAATCGACTAGAGGAAGTTCTGCGATCGGTTCATGTAGGACTCTTATGTGTGCAGCAAAATCCAGAAGATAGGCCAATCATGTCAGCTGCTGTTCTAATGTTGAGTGGTGAAGGTGCATTGCCTCAACCCCAGAAACCAGGTTTTTATACTGAAAGGAATCTGAGTGAGATCAAAGTCGACGCCGCTCCTAAACCATGTTCAGCTAATGAAGTCACTTTTACACTATTGGAGGCCCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

5.07

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 60 - 102 2.9e-09 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 18
AccBSI CCGCTC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 246
AciI CCGC 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 38
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 13, 155, 272
AluI AGCT 3 cut(s) 13, 155, 272
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 2 cut(s) 140, 300
ApeKI GCWGC 2 cut(s) 121, 155
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 188
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BbvI GCAGC 2 cut(s) 133, 142
BciT130I CCWGG 1 cut(s) 207
BfaI CTAG 1 cut(s) 77
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 3 cut(s) 122, 156, 252
BlsI GCNGC 3 cut(s) 123, 157, 253
Bme1390I CCNGG 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 301
BmrFI CCNGG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 185
BseBI CCWGG 1 cut(s) 207
BseMI GCAATG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 133, 142
BsgI GTGCAG 1 cut(s) 140
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 142, 302
BsiEI CGRYCG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 74
BsnI GGCC 2 cut(s) 142, 302
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 2 cut(s) 92, 237
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 142, 302
BspCNI CTCAG 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 18
BsrBI CCGCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 15
BssMI GATC 2 cut(s) 92, 237
BssNI GRCGYC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 249
BstAUI TGTACA 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 230
BstKTI GATC 2 cut(s) 95, 240
BstMBI GATC 2 cut(s) 92, 237
BstMCI CGRYCG 1 cut(s) 95
BstNI CCWGG 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 133, 142
BsuRI GGCC 2 cut(s) 142, 302
BveI ACCTGC 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 1 cut(s) 257
CsiI ACCWGGT 1 cut(s) 205
Csp6I GTAC 1 cut(s) 16
CviAII CATG 4 cut(s) 6, 101, 148, 264
CviJI RGCY 5 cut(s) 13, 142, 155, 272, 302
CviKI_1 RGCY 5 cut(s) 13, 142, 155, 272, 302
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 94, 239
DpnII GATC 2 cut(s) 92, 237
EcoRII CCWGG 1 cut(s) 205
FaeI CATG 4 cut(s) 9, 104, 151, 267
FaiI YATR 6 cut(s) 7, 102, 115, 149, 216, 265
FaqI GGGAC 1 cut(s) 74
FatI CATG 4 cut(s) 5, 100, 147, 263
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 122, 156, 252
Fsp4HI GCNGC 3 cut(s) 122, 156, 252
FspBI CTAG 1 cut(s) 77
GluI GCNGC 3 cut(s) 122, 156, 252
HaeIII GGCC 2 cut(s) 142, 302
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 4 cut(s) 9, 104, 151, 267
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 3 cut(s) 62, 108, 226
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 18, 247
Hpy188I TCNGA 1 cut(s) 231
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 2 cut(s) 18, 247
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 121, 185
HpyF3I CTNAG 1 cut(s) 230
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 4 cut(s) 9, 104, 151, 267
Kzo9I GATC 2 cut(s) 92, 237
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 5 cut(s) 13, 144, 192, 212, 219
Lsp1109I GCAGC 2 cut(s) 133, 142
MabI ACCWGGT 1 cut(s) 205
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 280
MalI GATC 2 cut(s) 94, 239
MbiI CCGCTC 1 cut(s) 254
MboI GATC 2 cut(s) 92, 237
MboII GAAGA 1 cut(s) 146
MlyI GAGTC 2 cut(s) 56, 102
MnlI CCTC 3 cut(s) 73, 201, 292
MspA1I CMGCKG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
NdeII GATC 2 cut(s) 92, 237
NlaIII CATG 4 cut(s) 9, 104, 151, 267
NmuCI GTSAC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 3 cut(s) 123, 157, 253
Ple19I CGATCG 1 cut(s) 95
PleI GAGTC 2 cut(s) 56, 102
PpsI GAGTC 2 cut(s) 56, 102
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 158
PvuI CGATCG 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SalI GTCGAC 1 cut(s) 245
SatI GCNGC 3 cut(s) 122, 156, 252
Sau3AI GATC 2 cut(s) 92, 237
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 2 cut(s) 56, 102
ScrFI CCNGG 1 cut(s) 207
SetI ASST 6 cut(s) 15, 32, 157, 184, 211, 274
SexAI ACCWGGT 1 cut(s) 205
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 205
TaqI TCGA 3 cut(s) 65, 73, 246
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 1 cut(s) 226
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 2 cut(s) 121, 155
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 22, 89, 291
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.