Rh5CG206600

divergent subfamily of APPLE domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000201
Physical Location & Seq
Reverse (-)
20838968 .. 20839382
415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG206600.1

Sequence Viewer

Length: 270 bp
ATGGTTGATGTGACGTTATGTGATTCTTGCAACATAACCGAAGTGTTAAGGTGTCTTCATGTGGGCCTGTTATGTGTGCAACAAGTACCTGAAGATAGACCAAGCATGTCATCTGTGGTTCTAATGTTGGGCAGTGAAGTTAAATTGCCTTCACCAAAGCAACCTGGCTTTTACACTGGACGGACTGTGACAGTCCCCAAATCAACATCATCAACGACCGACTTGTTTTCAACAAATATTTGCAGCACAATGTTTCTAGAGGCTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

89

Amino Acids

9.7

Weight (kDa)

5.63

Isoelectric Point (pI)

66.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 46 - 89 2.9e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 87
AgsI TTSAA 1 cut(s) 231
AjnI CCWGG 1 cut(s) 163
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 165
BfaI CTAG 2 cut(s) 257, 268
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 181
BseBI CCWGG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 219
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 66
BspANI GGCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 187, 193
BstC8I GCNNGC 1 cut(s) 265
BstMCI CGRYCG 1 cut(s) 219
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 139, 174
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 86
CviAII CATG 2 cut(s) 59, 106
CviJI RGCY 3 cut(s) 66, 168, 263
CviKI_1 RGCY 3 cut(s) 66, 168, 263
CviQI GTAC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 163
FaeI CATG 2 cut(s) 62, 109
FaiI YATR 5 cut(s) 19, 35, 60, 73, 107
FaqI GGGAC 1 cut(s) 179
FatI CATG 2 cut(s) 58, 105
Fnu4HI GCNGC 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 2 cut(s) 257, 268
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 2 cut(s) 62, 109
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 2 cut(s) 187, 193
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 30, 79, 243
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 62, 109
LpnPI CCDG 5 cut(s) 80, 102, 150, 162, 177
Lsp1109I GCAGC 1 cut(s) 255
MaeI CTAG 2 cut(s) 257, 268
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 10, 187
MboII GAAGA 2 cut(s) 47, 104
MluCI AATT 1 cut(s) 143
MnlI CCTC 1 cut(s) 253
MseI TTAA 2 cut(s) 47, 141
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
NlaIII CATG 2 cut(s) 62, 109
NmuCI GTSAC 2 cut(s) 10, 187
NspI RCATGY 1 cut(s) 109
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 47, 141
SatI GCNGC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 165
SetI ASST 4 cut(s) 17, 53, 91, 166
Sse9I AATT 1 cut(s) 143
SspI AATATT 1 cut(s) 238
SspMI CTAG 2 cut(s) 257, 268
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 187, 193
TaiI ACGT 1 cut(s) 17
TaqII GACCGA 1 cut(s) 233
TasI AATT 1 cut(s) 143
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 47, 141
Tru9I TTAA 2 cut(s) 47, 141
TscAI CASTG 2 cut(s) 139, 181
TseFI GTSAC 2 cut(s) 10, 187
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 2 cut(s) 10, 187
TspDTI ATGAA 1 cut(s) 47
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 2 cut(s) 139, 181
XbaI TCTAGA 1 cut(s) 256
XceI RCATGY 1 cut(s) 109
XspI CTAG 2 cut(s) 257, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.