Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422055.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Reverse (-)

516 .. 1286

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422055.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgctactagattggcctaagcgctttgacatcatcagtggtattgctcgggggctcctctatcttcatcaagattctagactgagagtaattcatagagatctcaaagccggcaatattttattagacaatgaatttaaccccaagatctcagactttggtctagctagaagttttggaggaaatgaaactgtagccgaaacgatgagagtggttggaacctatggttacatgtccccagaatatgcaagtgacgggttctactctaccaaatctgatgtttttagctttggtgtttcggtgttggagataataagtgggaagagaaacagaggattctctcatccagaccacgacctcaaccttcttggacatgcctggaatctatacacagaaggcaggtccatagaattgcttgatacatcagtaggggactccactaatccatccgaggaagttctgcgctcgattcatgtgggtcttttatgtgtgcagaaagatccagaagataggccaagcatgtcagatgttgttcgaatgttgagtggtgaaggtgcattgtctcaacctgaaaaacctgggttttatagtaaaagtagtgataggtctgaaaaccaagccaatcatttatctagagcatgctcggctaatgaagttagttttacgctacttgatgctagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

5.5

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	494
AcsI	RAATTY	1 cut(s)	134
AfeI	AGCGCT	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	231
AjnI	CCWGG	2 cut(s)	377, 577
AluBI	AGCT	2 cut(s)	167, 288
AluI	AGCT	2 cut(s)	167, 288
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	48
Aor51HI	AGCGCT	1 cut(s)	23
AoxI	GGCC	2 cut(s)	14, 512
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	24, 465
AspS9I	GGNCC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	535
AvaI	CYCGRG	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	402
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
BanII	GRGCYC	1 cut(s)	57
BccI	CCATC	1 cut(s)	454
BciT130I	CCWGG	2 cut(s)	379, 579
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	6 cut(s)	8, 78, 164, 168, 633, 678
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	25
BfuAI	ACCTGC	1 cut(s)	390
BglII	AGATCT	2 cut(s)	100, 147
Bme1390I	CCNGG	2 cut(s)	379, 579
Bme18I	GGWCC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	402
BmiI	GGNNCC	2 cut(s)	56, 220
BmrFI	CCNGG	2 cut(s)	379, 579
BmsI	GCATC	1 cut(s)	664
BoxI	GACNNNNGTC	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	450, 578
Bse118I	RCCGGY	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	379, 579
BseDI	CCNNGG	2 cut(s)	450, 578
BseGI	GGATG	2 cut(s)	343, 446
BseMII	CTCAG	2 cut(s)	74, 165
BseRI	GAGGAG	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	16, 514
BsiHKCI	CYCGRG	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	220, 446
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	220, 446
BsnI	GGCC	2 cut(s)	16, 514
BsoBI	CYCGRG	1 cut(s)	48
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	100, 147, 499
BspANI	GGCC	2 cut(s)	16, 514
BspCNI	CTCAG	2 cut(s)	75, 164
BspLI	GGNNCC	2 cut(s)	56, 220
BspMI	ACCTGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	494
BspT104I	TTCGAA	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	450, 578
BssMI	GATC	3 cut(s)	100, 147, 499
Bst2UI	CCWGG	2 cut(s)	379, 579
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	2 cut(s)	112, 640
BstDEI	CTNAG	3 cut(s)	18, 83, 151
BstF5I	GGATG	2 cut(s)	343, 446
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 465
BstKTI	GATC	3 cut(s)	103, 150, 502
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	3 cut(s)	100, 147, 499
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	2 cut(s)	379, 579
BstNSI	RCATGY	4 cut(s)	235, 377, 523, 642
BstPAI	GACNNNNGTC	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	377, 577
BstSFI	CTRYAG	1 cut(s)	192
BstX2I	RGATCY	3 cut(s)	100, 147, 499
BstYI	RGATCY	3 cut(s)	100, 147, 499
BsuRI	GGCC	2 cut(s)	16, 514
BtsCI	GGATG	2 cut(s)	343, 446
BtsIMutI	CAGTG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	112, 640
CfoI	GCGC	2 cut(s)	24, 465
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	402
CviAII	CATG	5 cut(s)	232, 374, 473, 520, 639
CviJI	RGCY	9 cut(s)	16, 55, 110, 167, 197, 288, 514, 620, 647
CviKI_1	RGCY	9 cut(s)	16, 55, 110, 167, 197, 288, 514, 620, 647
DdeI	CTNAG	3 cut(s)	18, 83, 151
DpnI	GATC	3 cut(s)	102, 149, 501
DpnII	GATC	3 cut(s)	100, 147, 499
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	402
Eco47III	AGCGCT	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	377, 577
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	5 cut(s)	235, 377, 476, 523, 642
FaqI	GGGAC	2 cut(s)	220, 446
FatI	CATG	5 cut(s)	231, 373, 472, 519, 638
FokI	GGATG	2 cut(s)	330, 433
FriOI	GRGCYC	1 cut(s)	57
FspBI	CTAG	6 cut(s)	8, 78, 164, 168, 633, 678
GlaI	GCGC	2 cut(s)	23, 464
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	16, 514
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	24, 465
Hin1II	CATG	5 cut(s)	235, 377, 476, 523, 642
Hin6I	GCGC	2 cut(s)	22, 463
HinP1I	GCGC	2 cut(s)	22, 463
HinfI	GANTC	5 cut(s)	74, 336, 382, 434, 469
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	560
Hpy188I	TCNGA	5 cut(s)	154, 277, 451, 526, 610
Hpy188III	TCNNGA	5 cut(s)	71, 78, 347, 503, 633
HpyAV	CCTTC	3 cut(s)	374, 389, 545
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	248, 493, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	3 cut(s)	18, 83, 151
Hsp92II	CATG	5 cut(s)	235, 377, 476, 523, 642
HspAI	GCGC	2 cut(s)	22, 463
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	100, 147, 499
LmnI	GCTCC	1 cut(s)	60
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	6 cut(s)	8, 78, 164, 168, 633, 678
MaeIII	GTNAC	2 cut(s)	227, 251
MalI	GATC	3 cut(s)	102, 149, 501
MboI	GATC	3 cut(s)	100, 147, 499
MboII	GAAGA	3 cut(s)	56, 334, 518
MflI	RGATCY	3 cut(s)	100, 147, 499
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	3 cut(s)	90, 134, 410
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	2 cut(s)	196, 285
MnlI	CCTC	5 cut(s)	68, 173, 326, 368, 445
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	138
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	2 cut(s)	379, 579
MvaI	CCWGG	2 cut(s)	379, 579
MwoI	GCNNNNNNNGC	1 cut(s)	644
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	3 cut(s)	100, 147, 499
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	5 cut(s)	235, 377, 476, 523, 642
NlaIV	GGNNCC	2 cut(s)	56, 220
NmeAIII	GCCGAG	1 cut(s)	623
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	4 cut(s)	235, 377, 523, 642
NspV	TTCGAA	1 cut(s)	535
PaeI	GCATGC	1 cut(s)	642
PciI	ACATGT	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	4 cut(s)	74, 336, 382, 469
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PscI	ACATGT	1 cut(s)	231
PshAI	GACNNNNGTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	377, 577
PspGI	CCWGG	2 cut(s)	377, 577
PspN4I	GGNNCC	2 cut(s)	56, 220
PspPI	GGNCC	1 cut(s)	402
PsuI	RGATCY	3 cut(s)	100, 147, 499
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	100, 147, 499
Sau96I	GGNCC	1 cut(s)	402
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	2 cut(s)	379, 579
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	664
SfcI	CTRYAG	1 cut(s)	192
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	1 cut(s)	402
SphI	GCATGC	1 cut(s)	642
Sse9I	AATT	3 cut(s)	90, 134, 410
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	6 cut(s)	8, 78, 164, 168, 633, 678
StyD4I	CCNGG	2 cut(s)	377, 577
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	467, 535
TasI	AATT	3 cut(s)	90, 134, 410
TfiI	GAWTC	4 cut(s)	74, 336, 382, 469
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	6 cut(s)	56, 83, 147, 201, 461, 666
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	402
XapI	RAATTY	1 cut(s)	134
XbaI	TCTAGA	2 cut(s)	77, 632
XceI	RCATGY	4 cut(s)	235, 377, 523, 642
XspI	CTAG	6 cut(s)	8, 78, 164, 168, 633, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.