Rh5DG260400

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
31131936 .. 31136144
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG260400.1

Sequence Viewer

Length: 615 bp
ATGGCCACTCTTTCTTTCACCTTCACTGGAATTTACTTGTCCCTTTCTTTCTTCAAGACTTCAACTGCAGCAGCAGATGGTAGCACCTTGGTTTTTAAAAATGGCAGCTTTGAGTTGGGTTCTGTCAGTCCTCAAGATGCTATTTTTCAAAGGAGTCTTTTAGCGTCAACTCCTCCAGGAGATATATGTGACACTGATGGCCGATGTGGCCCGAATGGACTGTGTGACATTAGTGACTCACAAGTTTGCAGTTGCTTAGAGGGATTCAAGCCCAAAGAAGAAGAGAACTGGAGCTTTGGGGAAAACTCGGATGGTTGTGTGCGTGTTACTCCATTGATGTGCCAAAGTAAGGATGATGGGTTTGTGAAATATGCCGGGGTCAAAGTGCCGGCGAGCATAGACTCTAGAGTGAACCAGAGCACGAGTCTCGAGGAATGCAAGGAGAATTGCTTTAACAACTGTTCTTGTATGGCTTATGCAAGCTCTGATGTCAGTGGCTGCACCATCTGGTTTGGTGATCTTTTCAACATTAGAAAGCTTCCACATGGAGGGGAGGATATGTCTGGAGATTGTGGAAAGAAGGAAGGTCCTTTGAGGCGATTGACGAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

204

Amino Acids

21.9

Weight (kDa)

4.67

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 57 - 92 3.9e-09 S-locus glycoprotein domain
PAN_2 PF08276 114 - 177 1.6e-18 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 3, 199
AcsI RAATTY 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 349, 548
AgsI TTSAA 5 cut(s) 55, 63, 149, 268, 526
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 4 cut(s) 108, 294, 483, 538
AluI AGCT 4 cut(s) 108, 294, 483, 538
Alw21I GWGCWC 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 431
AlwNI CAGNNNCTG 1 cut(s) 498
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 3 cut(s) 3, 199, 208
ApeKI GCWGC 4 cut(s) 68, 71, 105, 498
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 209, 587
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 10, 527
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 1 cut(s) 587
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 422
BbvI GCAGC 4 cut(s) 80, 83, 117, 485
BccI CCATC 5 cut(s) 71, 191, 305, 350, 512
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 1 cut(s) 177
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 4 cut(s) 69, 72, 106, 499
BlsI GCNGC 4 cut(s) 70, 73, 107, 500
Bme1390I CCNGG 2 cut(s) 177, 376
Bme18I GGWCC 1 cut(s) 587
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 209, 587
BmrFI CCNGG 2 cut(s) 177, 376
BmsI GCATC 1 cut(s) 127
BpmI CTGGAG 3 cut(s) 159, 310, 585
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 87, 375
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 548
Bse118I RCCGGY 1 cut(s) 388
Bse1I ACTGG 2 cut(s) 31, 293
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 87, 375
BseGI GGATG 2 cut(s) 316, 358
BseLI CCNNNNNNNGG 2 cut(s) 349, 548
BseNI ACTGG 2 cut(s) 31, 293
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 4 cut(s) 80, 83, 117, 485
BsgI GTGCAG 1 cut(s) 484
BshFI GGCC 3 cut(s) 5, 201, 210
BsiHKAI GWGCWC 1 cut(s) 422
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 2 cut(s) 375, 389
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 349, 548
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 25
BsmI GAATGC 2 cut(s) 440, 613
BsnI GGCC 3 cut(s) 5, 201, 210
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 1 cut(s) 517
BspANI GGCC 3 cut(s) 5, 201, 210
BspMAI CTGCAG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 388
BsrI ACTGG 2 cut(s) 31, 293
BssAI RCCGGY 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 87, 375
BssMI GATC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 421
BssT1I CCWWGG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 222, 461
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 3 cut(s) 390, 394, 481
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 2 cut(s) 316, 358
BstKTI GATC 1 cut(s) 520
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 1 cut(s) 517
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 175, 374
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 80, 83, 117, 485
BsuRI GGCC 3 cut(s) 5, 201, 210
BtsCI GGATG 2 cut(s) 316, 358
BtsIMutI CAGTG 3 cut(s) 24, 192, 499
Cac8I GCNNGC 3 cut(s) 390, 394, 481
CaiI CAGNNNCTG 1 cut(s) 498
Cfr10I RCCGGY 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 209, 587
CseI GACGC 1 cut(s) 153
CviAII CATG 1 cut(s) 545
DdeI CTNAG 1 cut(s) 256
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
DraI TTTAAA 1 cut(s) 97
EaeI YGGCCR 2 cut(s) 3, 199
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 548
FaiI YATR 8 cut(s) 185, 187, 372, 398, 470, 477, 546, 560
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 544
Fnu4HI GCNGC 4 cut(s) 69, 72, 106, 499
FokI GGATG 2 cut(s) 323, 365
Fsp4HI GCNGC 4 cut(s) 69, 72, 106, 499
FspBI CTAG 1 cut(s) 405
GluI GCNGC 4 cut(s) 69, 72, 106, 499
GsuI CTGGAG 3 cut(s) 159, 310, 585
HaeIII GGCC 3 cut(s) 5, 201, 210
HapII CCGG 2 cut(s) 375, 389
HgaI GACGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 548
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 5 cut(s) 154, 236, 264, 401, 424
HpaII CCGG 2 cut(s) 375, 389
HphI GGTGA 2 cut(s) 10, 527
Hpy166II GTNNAC 2 cut(s) 168, 412
Hpy188I TCNGA 2 cut(s) 310, 487
Hpy188III TCNNGA 5 cut(s) 55, 134, 405, 428, 564
Hpy8I GTNNAC 2 cut(s) 168, 412
HpyAV CCTTC 3 cut(s) 31, 574, 578
HpyCH4III ACNGT 2 cut(s) 222, 461
HpyCH4V TGCA 5 cut(s) 68, 249, 438, 479, 501
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 548
KroI GCCGGC 1 cut(s) 388
KroNI GCCGGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 517
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 9 cut(s) 12, 162, 189, 274, 388, 402, 428, 493, 549
Lsp1109I GCAGC 4 cut(s) 80, 83, 117, 485
LweI GCATC 1 cut(s) 127
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 4 cut(s) 188, 224, 233, 325
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MboII GAAGA 3 cut(s) 43, 290, 293
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 30, 445
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 163, 230, 395, 433
MnlI CCTC 7 cut(s) 141, 183, 253, 424, 542, 547, 588
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 388
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 96, 453, 613
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 375, 389
MspR9I CCNGG 2 cut(s) 177, 376
Mva1269I GAATGC 2 cut(s) 440, 613
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 207
NaeI GCCGGC 1 cut(s) 390
NciI CCSGG 1 cut(s) 376
NdeII GATC 1 cut(s) 517
NgoMIV GCCGGC 1 cut(s) 388
NlaIII CATG 1 cut(s) 548
NmuCI GTSAC 3 cut(s) 188, 224, 233
PaeR7I CTCGAG 1 cut(s) 428
PctI GAATGC 2 cut(s) 440, 613
PdiI GCCGGC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 4 cut(s) 70, 73, 107, 500
PleI GAGTC 4 cut(s) 162, 230, 395, 432
PpsI GAGTC 4 cut(s) 162, 230, 395, 432
PpuMI RGGWCCY 1 cut(s) 587
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspPI GGNCC 2 cut(s) 209, 587
PspPPI RGGWCCY 1 cut(s) 587
PstI CTGCAG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 3 cut(s) 96, 453, 613
SatI GCNGC 4 cut(s) 69, 72, 106, 499
Sau3AI GATC 1 cut(s) 517
Sau96I GGNCC 2 cut(s) 209, 587
SchI GAGTC 4 cut(s) 163, 230, 395, 433
ScrFI CCNGG 2 cut(s) 177, 376
SduI GDGCHC 1 cut(s) 422
SetI ASST 7 cut(s) 23, 89, 110, 296, 485, 540, 589
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 66
SfiI GGCCNNNNNGGCC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 428
SinI GGWCC 1 cut(s) 587
SlaI CTCGAG 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 2 cut(s) 132, 428
SmoI CTYRAG 2 cut(s) 132, 428
Sse9I AATT 2 cut(s) 30, 445
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 175, 374
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 222, 461
TaqI TCGA 1 cut(s) 429
TasI AATT 2 cut(s) 30, 445
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 96, 453, 613
Tru9I TTAA 3 cut(s) 96, 453, 613
TscAI CASTG 3 cut(s) 31, 199, 499
TseFI GTSAC 3 cut(s) 188, 224, 233
TseI GCWGC 4 cut(s) 68, 71, 105, 498
Tsp45I GTSAC 3 cut(s) 188, 224, 233
TspRI CASTG 3 cut(s) 31, 199, 499
VpaK11BI GGWCC 1 cut(s) 587
XapI RAATTY 1 cut(s) 30
XbaI TCTAGA 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 428
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.