Rroxscaffold_1G00044870

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
63903362 .. 63903710
349 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00044870.1

Sequence Viewer

Length: 252 bp
ATGGAAGGACTGTTTTCAATAAAGTCTGATGTGTATAGTTTTGGTGTTTTATTGCTAGAAATCATTACTGGCAAAAAGAATGTTGGTTCCTATGAGATGTATCCATATTCAAATTTGATTGGACATGTTTGGGAGTTGTGGAAAGAAGACAGAGCCGTGGAAATCATTGATTCATCTATAAGTGAATCTTACCTTGTTAGTGAAATTATAAGGTGCATTCAAATCGCACTCCGTGTGTGCAAGAATTTGTGA

Protein Analysis

83

Amino Acids

9.52

Weight (kDa)

5.0

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 33 1e-05 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AcsI RAATTY 2 cut(s) 112, 244
AdeI CACNNNGTG 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 3 cut(s) 18, 111, 221
ApoI RAATTY 2 cut(s) 112, 244
BbsI GAAGAC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciVI GTATCC 1 cut(s) 111
BfaI CTAG 1 cut(s) 56
BfuI GTATCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 88
BpiI GAAGAC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 156
Bse1I ACTGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 73
BsmI GAATGC 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 153
BsuI GTATCC 1 cut(s) 111
BtgI CCRYGG 1 cut(s) 156
CviAII CATG 1 cut(s) 125
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
DraIII CACNNNGTG 1 cut(s) 233
FaeI CATG 1 cut(s) 128
FaiI YATR 6 cut(s) 36, 93, 106, 126, 179, 209
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 1 cut(s) 124
FspBI CTAG 1 cut(s) 56
Hin1II CATG 1 cut(s) 128
HinfI GANTC 2 cut(s) 170, 185
Hpy188I TCNGA 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 2 cut(s) 216, 240
Hsp92II CATG 1 cut(s) 128
LpnPI CCDG 1 cut(s) 54
MaeI CTAG 1 cut(s) 56
MboII GAAGA 1 cut(s) 158
MluCI AATT 3 cut(s) 112, 204, 244
Mva1269I GAATGC 1 cut(s) 216
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 1 cut(s) 128
PciI ACATGT 1 cut(s) 124
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 170, 185
PscI ACATGT 1 cut(s) 124
PsiI TTATAA 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 88
SetI ASST 2 cut(s) 195, 215
SgeI CNNG 6 cut(s) 68, 81, 137, 169, 206, 245
Sse9I AATT 3 cut(s) 112, 204, 244
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 12
TasI AATT 3 cut(s) 112, 204, 244
TfiI GAWTC 2 cut(s) 170, 185
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 221
XapI RAATTY 2 cut(s) 112, 244
XceI RCATGY 1 cut(s) 128
XspI CTAG 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.