Rmu_co8410231.1_g000001

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8410231.1
OG0000201
Physical Location & Seq
Forward (+)
30 .. 1334
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8410231.1_g000001.1.cds

Sequence Viewer

Length: 679 bp
atgtgccaaagtaaggatgatgggtttgtgaaatatgccggggtcaaagtgccggcgagcatagactctagggtgaaccagagcacgagtctcgaggaatgcaaggagagttgctttaacaactgttcttgtatggcttatgcaagctctgatgtcaatggctgcaccatctggtttggtaatcttttcaacattagaaagcttccacatggagggaaggatctgtatgttcgagtgcctacttccgaattgagcacgaagcatcgatctaagttgaagataattatagcgacagttgcatctggtgtttgcattgtttttgggctgctcttagccttctattgcattagcagaaagaggaggaaacagagagagaaaatggacagaacgaacaacggacagaatgaagacctggagctaccactctatagtctgtcgacaattatagatgccaccgatagcttttcattcaacaagaagctcggggaaggtggttttggacctgtatacaagggtagactaacagatggtcaagagattgccgtgaagaggctctcacaaacttctggacaaggtgccacagagttcaaaaatgaagtgatacttatagcgaaacttcagcatcgaaatcttgtaaagctccttggttgttgcattgaaggggaagagaaattgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

226

Amino Acids

25.06

Weight (kDa)

8.97

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 575
AccI GTMKAC 3 cut(s) 437, 507, 517
AclWI GGATC 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 602
AfiI CCNNNNNNNGG 3 cut(s) 13, 212, 549
AgsI TTSAA 5 cut(s) 190, 277, 472, 589, 659
AjnI CCWGG 1 cut(s) 411
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
AluBI AGCT 6 cut(s) 147, 202, 418, 462, 481, 640
AluI AGCT 6 cut(s) 147, 202, 418, 462, 481, 640
Alw21I GWGCWC 2 cut(s) 86, 257
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 228
Ama87I CYCGRG 2 cut(s) 92, 482
ApeKI GCWGC 2 cut(s) 162, 325
AspS9I GGNCC 1 cut(s) 500
AsuC2I CCSGG 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 85
AvaI CYCGRG 2 cut(s) 92, 482
AvaII GGWCC 1 cut(s) 500
BanI GGYRCC 1 cut(s) 575
BauI CACGAG 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 2 cut(s) 86, 257
BbvI GCAGC 2 cut(s) 149, 312
BccI CCATC 3 cut(s) 14, 176, 521
BceAI ACGGC 1 cut(s) 527
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 427
BisI GCNGC 2 cut(s) 163, 326
BlsI GCNGC 2 cut(s) 164, 327
Bme1390I CCNGG 2 cut(s) 40, 413
Bme18I GGWCC 1 cut(s) 500
BmeT110I CYCGRG 2 cut(s) 92, 482
BmgT120I GGNCC 1 cut(s) 500
BmiI GGNNCC 1 cut(s) 577
BmrFI CCNGG 2 cut(s) 40, 413
BmsI GCATC 4 cut(s) 271, 308, 439, 631
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 40
Bsa29I ATCGAT 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 39, 643
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 212, 549
Bse118I RCCGGY 1 cut(s) 52
BseBI CCWGG 1 cut(s) 413
BseCI ATCGAT 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 39, 643
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 3 cut(s) 13, 212, 549
BseRI GAGGAG 1 cut(s) 373
BseXI GCAGC 2 cut(s) 149, 312
BsgI GTGCAG 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 575
BshVI ATCGAT 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 86, 257
BsiHKCI CYCGRG 2 cut(s) 92, 482
BsiSI CCGG 2 cut(s) 39, 53
BslI CCNNNNNNNGG 3 cut(s) 13, 212, 549
BsmAI GTCTC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 104
BsoBI CYCGRG 2 cut(s) 92, 482
Bsp1286I GDGCHC 2 cut(s) 86, 257
Bsp143I GATC 2 cut(s) 220, 266
BspDI ATCGAT 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 577
BspPI GGATC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 575
BsrFI RCCGGY 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 39, 643
BssMI GATC 2 cut(s) 220, 266
BssNAI GTATAC 1 cut(s) 508
BssSI CACGAG 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 643
Bst1107I GTATAC 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 2 cut(s) 125, 295
Bst6I CTCTTC 2 cut(s) 542, 660
BstC8I GCNNGC 3 cut(s) 54, 58, 145
BstDEI CTNAG 2 cut(s) 270, 331
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 2 cut(s) 223, 269
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 220, 266
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 38, 411
BstSFI CTRYAG 1 cut(s) 427
BstV1I GCAGC 2 cut(s) 149, 312
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZ17I GTATAC 1 cut(s) 508
Bsu15I ATCGAT 1 cut(s) 265
BsuTUI ATCGAT 1 cut(s) 265
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 54, 58, 145
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 500
ClaI ATCGAT 1 cut(s) 265
CviAII CATG 1 cut(s) 209
DdeI CTNAG 2 cut(s) 270, 331
DpnI GATC 2 cut(s) 222, 268
DpnII GATC 2 cut(s) 220, 266
Eam1104I CTCTTC 2 cut(s) 542, 660
EarI CTCTTC 2 cut(s) 542, 660
Eco130I CCWWGG 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 500
Eco57I CTGAAG 1 cut(s) 602
Eco88I CYCGRG 2 cut(s) 92, 482
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 643
FaeI CATG 1 cut(s) 212
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FatI CATG 1 cut(s) 208
FblI GTMKAC 3 cut(s) 437, 507, 517
Fnu4HI GCNGC 2 cut(s) 163, 326
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 2 cut(s) 163, 326
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 163, 326
GsuI CTGGAG 1 cut(s) 434
HapII CCGG 2 cut(s) 39, 53
Hin1II CATG 1 cut(s) 212
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 65, 88
HpaII CCGG 2 cut(s) 39, 53
HphI GGTGA 1 cut(s) 85
Hpy166II GTNNAC 4 cut(s) 76, 438, 508, 518
Hpy188I TCNGA 2 cut(s) 151, 247
Hpy188III TCNNGA 3 cut(s) 92, 533, 567
Hpy8I GTNNAC 4 cut(s) 76, 438, 508, 518
HpyAV CCTTC 4 cut(s) 211, 346, 482, 653
HpyCH4III ACNGT 2 cut(s) 125, 295
HpyCH4V TGCA 7 cut(s) 102, 143, 165, 299, 312, 345, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 270, 331
Hsp92II CATG 1 cut(s) 212
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 220, 266
LmnI GCTCC 2 cut(s) 415, 645
LpnPI CCDG 9 cut(s) 52, 66, 92, 157, 288, 398, 425, 516, 552
Lsp1109I GCAGC 2 cut(s) 149, 312
LweI GCATC 4 cut(s) 271, 308, 439, 631
MaeI CTAG 1 cut(s) 69
MalI GATC 2 cut(s) 222, 268
MboI GATC 2 cut(s) 220, 266
MboII GAAGA 4 cut(s) 289, 419, 559, 677
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 86, 257
MluCI AATT 4 cut(s) 248, 282, 441, 671
MlyI GAGTC 2 cut(s) 59, 97
MnlI CCTC 5 cut(s) 88, 206, 351, 354, 543
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 1 cut(s) 117
MspI CCGG 2 cut(s) 39, 53
MspR9I CCNGG 2 cut(s) 40, 413
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 296
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 40
NdeII GATC 2 cut(s) 220, 266
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 1 cut(s) 212
NlaIV GGNNCC 1 cut(s) 577
PaeR7I CTCGAG 1 cut(s) 92
PctI GAATGC 1 cut(s) 104
PdiI GCCGGC 1 cut(s) 54
PkrI GCNGC 2 cut(s) 164, 327
PleI GAGTC 2 cut(s) 59, 96
PpsI GAGTC 2 cut(s) 59, 96
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 577
PspPI GGNCC 1 cut(s) 500
PsuI RGATCY 1 cut(s) 220
SalI GTCGAC 1 cut(s) 436
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 163, 326
Sau3AI GATC 2 cut(s) 220, 266
Sau96I GGNCC 1 cut(s) 500
SchI GAGTC 2 cut(s) 59, 97
ScrFI CCNGG 2 cut(s) 40, 413
SduI GDGCHC 2 cut(s) 86, 257
SfaNI GCATC 4 cut(s) 271, 308, 439, 631
SfcI CTRYAG 1 cut(s) 427
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 248, 282, 441, 671
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 38, 411
StyI CCWWGG 1 cut(s) 643
TaaI ACNGT 2 cut(s) 125, 295
TaqI TCGA 5 cut(s) 93, 232, 265, 437, 625
TasI AATT 4 cut(s) 248, 282, 441, 671
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseI GCWGC 2 cut(s) 162, 325
TspDTI ATGAA 3 cut(s) 420, 456, 609
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 3 cut(s) 437, 507, 517
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.