Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

91627396 .. 91628096

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00070690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCCCCAGAATATGCAATGGAAGGACTGTTTTCAATAAAGTCTGATGTATATAGTTTTGGTGTTTTACTGCTAGAAATCATCACTGGCAAAAAGAATGTTGGCTATTACCATGAGGAGTATCCTAATTCAAATTTGGTTGGACATGTTTGGGACTTGTGGATAGAAGGCAGAGCTGTGGAAATCTTTGATTCATCTATAGATGAATACCTTGTTAGTGAAGTTGTAAGGTGCATTCAAATCGCGCTCTTGTGCGTGCAAGAATATGCAACAGACCGGCCAACCATGTCAGCAGTTGTTTCCATGTTAGGTAATGATGCAGCTCTTCCTTCACCAAGACGACCCGCATTTTTACTAAAGAGAATGACTCCTAGTGGAGAACCATCCAGCGGGGAAGGAGCTAATTCAGTAAATGATGTCACATGTACAATTGTAGAAGGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

148

Amino Acids

16.33

Weight (kDa)

4.59

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 103	2.3e-08	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	105 - 148	1.1e-07	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	2 cut(s)	345, 390
AcoI	YGGCCR	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	1 cut(s)	427
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	2 cut(s)	145, 422
AgsI	TTSAA	3 cut(s)	36, 132, 239
AluBI	AGCT	3 cut(s)	176, 323, 401
AluI	AGCT	3 cut(s)	176, 323, 401
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	391
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciVI	GTATCC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	74, 372
BfmI	CTRYAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	276
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	277
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	425
BspACI	CCGC	2 cut(s)	345, 390
BspANI	GGCC	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	276
BsrGI	TGTACA	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	425
BstC8I	GCNNGC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	247
BstNSI	RCATGY	2 cut(s)	149, 426
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	257
CfoI	GCGC	1 cut(s)	247
Cfr10I	RCCGGY	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	426
CviAII	CATG	5 cut(s)	113, 146, 286, 304, 423
CviJI	RGCY	5 cut(s)	105, 176, 280, 323, 401
CviKI_1	RGCY	5 cut(s)	105, 176, 280, 323, 401
CviQI	GTAC	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
FaeI	CATG	5 cut(s)	116, 149, 289, 307, 426
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	5 cut(s)	112, 145, 285, 303, 422
FauI	CCCGC	2 cut(s)	352, 383
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	2 cut(s)	74, 372
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	1 cut(s)	277
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	5 cut(s)	116, 149, 289, 307, 426
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	191, 367
HpaII	CCGG	1 cut(s)	277
HphI	GGTGA	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	46
HpyAV	CCTTC	5 cut(s)	17, 161, 339, 389, 431
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	17, 234, 259, 269, 320
Hsp92II	CATG	5 cut(s)	116, 149, 289, 307, 426
HspAI	GCGC	1 cut(s)	245
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	398
LpnPI	CCDG	4 cut(s)	21, 72, 290, 400
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	74, 372
MaeIII	GTNAC	1 cut(s)	418
MboII	GAAGA	1 cut(s)	317
MfeI	CAATTG	1 cut(s)	429
MluCI	AATT	4 cut(s)	127, 133, 403, 429
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	390
MspI	CCGG	1 cut(s)	277
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	234
MvnI	CGCG	1 cut(s)	245
NlaIII	CATG	5 cut(s)	116, 149, 289, 307, 426
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	2 cut(s)	149, 426
PciI	ACATGT	2 cut(s)	145, 422
PciSI	GCTCTTC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PscI	ACATGT	2 cut(s)	145, 422
RsaI	GTAC	1 cut(s)	427
RsaNI	GTAC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	330
SatI	GCNGC	1 cut(s)	321
SchI	GAGTC	1 cut(s)	361
SetI	ASST	7 cut(s)	178, 213, 233, 313, 325, 403, 442
SfaNI	GCATC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	4 cut(s)	127, 133, 403, 429
SsiI	CCGC	2 cut(s)	345, 390
SspMI	CTAG	2 cut(s)	74, 372
TaaI	ACNGT	1 cut(s)	30
TasI	AATT	4 cut(s)	127, 133, 403, 429
TatI	WGTACW	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	191
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	183, 219
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	2 cut(s)	149, 426
XspI	CTAG	2 cut(s)	74, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.