Rw5G022990

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000201
Physical Location & Seq
Forward (+)
32346174 .. 32348404
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022990.1

Sequence Viewer

Length: 1155 bp
ATGCTCTTGGTTGCTTATTGCGTTCACAGGAGGAGAACAAAGTTCAAAGAGAAAATGGGAGAGAATGGAATAACGAATCAGAACAATGACGGACAGAACGAAGACATCGAGCTACCAATATTTAGTTTGTCCACAATAGTCACAGCCACTGATAACTTTTCATTCAACATGAAACTTGGAGAAGGTGGCTTTGGGACTGTATACAAGGGTAGTCTAGTGGATGGGCTAGAAATTGCTGTGAAGAGGCTCTCACGAAGTTCAGGGCAAGGACCAACTGAGTTCAAAAATGAAGTACTACTAATAGCCAAACTTCAGCACCGAAATCTTGTAAGGCTCCTAGGTTGTTGCATTGAGGGAGAAGAGAGATTGTTGATTTATGAATACATGCCCAACAACAGCTTGGACTTCTACCTTTTTGATGAAAATCGAGCAAGGCTATTGGCTTGGCCTCAACGCTTTCACATTATCTGTGGGATAGCCAGAGGTCTTCTTTATCTACATCAAGATTCCAGATTGCGGATTATTCATAGAGATCTTAAAGCAAGTAATGTTTTGCTTGATAAGGAGATGAACCCAAAAATCTCAGACTTCGGCATGGCTAGAACATTTGGAGGAGATCAGACTGAAGGAGTTACAAGAAGAGTTGTTGGAACCTATGGTTATATGGCACCAGAATATGCAATTGATGGTCAATTCTCTGTAAAATCCGACGTTTTTAGTTTTGGCATTTTATTGTTGGAAACATTAAGCGGGAAGAGAAGTAGAGGATTTCATGATCCTGTTGATAACCTTAACCTCATTGGACATGCATGGCGATTGTGGAAAGAAGGAAGATCTTCTGAGTTGATTGATGAAAGCTTAAGGGACTCCTGCAGTCTGTCAGAAATCTTGTGTTGCTTCCATATTAGTCTTTTATGTGTGCAAGAGCTTCCTGAGGACAGGCCAAATATTTCAACCGTGATTCTCATGTTAGGTGGTGGTTCTGCCTTGCCTCAGCCCAAAAAACCAGGTTTTTTTGGTAGAAGTTCATCTGCAGCAGATTCTTCTTCATGTAAGAATGCAACAACATCTTCAATTAACGATGAAACATCTTCAAGTAAGAATTATACATATTCAAACTACGACTCTACAATAACAGTATTGGAGGGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

384

Amino Acids

42.96

Weight (kDa)

6.47

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 54 - 253 7.1e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 55 - 321 7.4e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 517, 750
AclWI GGATC 1 cut(s) 770
AcuI CTGAAG 2 cut(s) 296, 645
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 516
AflII CTTAAG 1 cut(s) 859
AgsI TTSAA 7 cut(s) 46, 166, 283, 954, 1074, 1095, 1116
AjnI CCWGG 1 cut(s) 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 4 cut(s) 112, 399, 858, 928
AluI AGCT 4 cut(s) 112, 399, 858, 928
AlwI GGATC 1 cut(s) 770
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 2 cut(s) 446, 941
ApeKI GCWGC 1 cut(s) 1034
Asp700I GAANNNNTTC 1 cut(s) 835
AspA2I CCTAGG 1 cut(s) 337
AspS9I GGNCC 1 cut(s) 269
AvaII GGWCC 1 cut(s) 269
AvrII CCTAGG 1 cut(s) 337
AxyI CCTNAGG 1 cut(s) 933
BanI GGYRCC 1 cut(s) 667
BbsI GAAGAC 2 cut(s) 108, 479
BbvCI CCTCAGC 1 cut(s) 993
BbvI GCAGC 1 cut(s) 1046
BccI CCATC 2 cut(s) 215, 680
BciT130I CCWGG 1 cut(s) 1008
BfaI CTAG 4 cut(s) 215, 227, 338, 600
BfmI CTRYAG 2 cut(s) 871, 1032
BfrI CTTAAG 1 cut(s) 859
BglII AGATCT 2 cut(s) 532, 833
BisI GCNGC 1 cut(s) 1035
BlnI CCTAGG 1 cut(s) 337
BlsI GCNGC 1 cut(s) 1036
BmcAI AGTACT 1 cut(s) 294
Bme1390I CCNGG 1 cut(s) 1008
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 3 cut(s) 335, 652, 669
BmrFI CCNGG 1 cut(s) 1008
BpiI GAAGAC 2 cut(s) 108, 479
Bpu10I CCTNAGC 1 cut(s) 993
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 337
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 933
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 5 cut(s) 267, 597, 831, 924, 1007
BseRI GAGGAG 2 cut(s) 46, 627
BseXI GCAGC 1 cut(s) 1046
BshFI GGCC 2 cut(s) 448, 943
BshNI GGYRCC 1 cut(s) 667
BslFI GGGAC 2 cut(s) 208, 878
BslI CCNNNNNNNGG 1 cut(s) 516
BsmFI GGGAC 2 cut(s) 208, 878
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 2 cut(s) 448, 943
Bsp143I GATC 4 cut(s) 532, 616, 775, 833
BspACI CCGC 2 cut(s) 517, 750
BspANI GGCC 2 cut(s) 448, 943
BspCNI CTCAG 5 cut(s) 268, 596, 832, 925, 1006
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 3 cut(s) 335, 652, 669
BspMAI CTGCAG 2 cut(s) 875, 1036
BspPI GGATC 1 cut(s) 770
BspT107I GGYRCC 1 cut(s) 667
BspTI CTTAAG 1 cut(s) 859
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 4 cut(s) 532, 616, 775, 833
BssNAI GTATAC 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 337
Bst1107I GTATAC 1 cut(s) 202
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 3 cut(s) 199, 958, 1138
Bst6I CTCTTC 4 cut(s) 236, 354, 634, 749
BstAFI CTTAAG 1 cut(s) 859
BstDEI CTNAG 5 cut(s) 276, 583, 840, 933, 993
BstF5I GGATG 1 cut(s) 226
BstKTI GATC 4 cut(s) 535, 619, 778, 836
BstMBI GATC 4 cut(s) 532, 616, 775, 833
BstNI CCWGG 1 cut(s) 1008
BstNSI RCATGY 2 cut(s) 388, 809
BstSCI CCNGG 1 cut(s) 1006
BstSFI CTRYAG 2 cut(s) 871, 1032
BstV1I GCAGC 1 cut(s) 1046
BstV2I GAAGAC 2 cut(s) 108, 479
BstX2I RGATCY 2 cut(s) 532, 833
BstYI RGATCY 2 cut(s) 532, 833
BstZ17I GTATAC 1 cut(s) 202
Bsu36I CCTNAGG 1 cut(s) 933
BsuRI GGCC 2 cut(s) 448, 943
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 269
CsiI ACCWGGT 1 cut(s) 1006
Csp6I GTAC 1 cut(s) 293
CviAII CATG 8 cut(s) 169, 385, 595, 773, 806, 810, 967, 1050
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 5 cut(s) 276, 583, 840, 933, 993
DpnI GATC 4 cut(s) 534, 618, 777, 835
DpnII GATC 4 cut(s) 532, 616, 775, 833
Eam1104I CTCTTC 4 cut(s) 236, 354, 634, 749
EarI CTCTTC 4 cut(s) 236, 354, 634, 749
Eco130I CCWWGG 1 cut(s) 337
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 296, 645
Eco81I CCTNAGG 1 cut(s) 933
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 337
EcoT22I ATGCAT 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 337
FaeI CATG 8 cut(s) 172, 388, 598, 776, 809, 813, 970, 1053
FaqI GGGAC 2 cut(s) 208, 878
FatI CATG 8 cut(s) 168, 384, 594, 772, 805, 809, 966, 1049
FauI CCCGC 1 cut(s) 743
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 1035
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 1035
FspBI CTAG 4 cut(s) 215, 227, 338, 600
GluI GCNGC 1 cut(s) 1035
HaeIII GGCC 2 cut(s) 448, 943
Hin1II CATG 8 cut(s) 172, 388, 598, 776, 809, 813, 970, 1053
HindIII AAGCTT 1 cut(s) 856
HinfI GANTC 6 cut(s) 76, 506, 866, 961, 1040, 1124
Hpy166II GTNNAC 3 cut(s) 25, 132, 202
Hpy188I TCNGA 6 cut(s) 81, 586, 621, 709, 841, 883
Hpy188III TCNNGA 5 cut(s) 252, 503, 510, 773, 932
Hpy8I GTNNAC 3 cut(s) 25, 132, 202
Hpy99I CGWCG 1 cut(s) 713
HpyAV CCTTC 3 cut(s) 176, 620, 821
HpyCH4III ACNGT 3 cut(s) 199, 958, 1138
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 7 cut(s) 348, 680, 809, 873, 922, 1034, 1061
HpyF3I CTNAG 5 cut(s) 276, 583, 840, 933, 993
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 8 cut(s) 172, 388, 598, 776, 809, 813, 970, 1053
Kzo9I GATC 4 cut(s) 532, 616, 775, 833
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 1 cut(s) 1046
MabI ACCWGGT 1 cut(s) 1006
MaeI CTAG 4 cut(s) 215, 227, 338, 600
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 2 cut(s) 139, 631
MalI GATC 4 cut(s) 534, 618, 777, 835
MboI GATC 4 cut(s) 532, 616, 775, 833
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 2 cut(s) 532, 833
MluCI AATT 5 cut(s) 231, 681, 692, 1074, 1102
MlyI GAGTC 2 cut(s) 860, 1118
MmeI TCCRAC 3 cut(s) 628, 717, 732
Mph1103I ATGCAT 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 835
MseI TTAA 5 cut(s) 537, 746, 792, 860, 1077
MspCI CTTAAG 1 cut(s) 859
MspR9I CCNGG 1 cut(s) 1008
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 1 cut(s) 1008
NdeII GATC 4 cut(s) 532, 616, 775, 833
NlaIII CATG 8 cut(s) 172, 388, 598, 776, 809, 813, 970, 1053
NlaIV GGNNCC 3 cut(s) 335, 652, 669
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 811
NspI RCATGY 2 cut(s) 388, 809
PagI TCATGA 1 cut(s) 772
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 105
PctI GAATGC 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 4 cut(s) 76, 506, 961, 1040
PkrI GCNGC 1 cut(s) 1036
PleI GAGTC 2 cut(s) 860, 1118
PpsI GAGTC 2 cut(s) 860, 1118
Psp6I CCWGG 1 cut(s) 1006
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 3 cut(s) 335, 652, 669
PspPI GGNCC 1 cut(s) 269
PstI CTGCAG 2 cut(s) 875, 1036
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 532, 833
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 5 cut(s) 537, 746, 792, 860, 1077
SatI GCNGC 1 cut(s) 1035
Sau3AI GATC 4 cut(s) 532, 616, 775, 833
Sau96I GGNCC 1 cut(s) 269
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 2 cut(s) 860, 1118
ScrFI CCNGG 1 cut(s) 1008
SexAI ACCWGGT 1 cut(s) 1006
SfcI CTRYAG 2 cut(s) 871, 1032
SinI GGWCC 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
Sse9I AATT 5 cut(s) 231, 681, 692, 1074, 1102
SsiI CCGC 2 cut(s) 517, 750
SspI AATATT 2 cut(s) 120, 949
SspMI CTAG 4 cut(s) 215, 227, 338, 600
StyD4I CCNGG 1 cut(s) 1006
StyI CCWWGG 1 cut(s) 337
TaaI ACNGT 3 cut(s) 199, 958, 1138
TaiI ACGT 1 cut(s) 714
TaqI TCGA 3 cut(s) 108, 427, 1150
TasI AATT 5 cut(s) 231, 681, 692, 1074, 1102
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 4 cut(s) 76, 506, 961, 1040
Tru1I TTAA 5 cut(s) 537, 746, 792, 860, 1077
Tru9I TTAA 5 cut(s) 537, 746, 792, 860, 1077
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 1034
Tsp45I GTSAC 1 cut(s) 139
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 859
VpaK11BI GGWCC 1 cut(s) 269
XceI RCATGY 2 cut(s) 388, 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmaJI CCTAGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 4 cut(s) 215, 227, 338, 600
ZrmI AGTACT 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.