Rroxscaffold_1G00070620

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000201
Physical Location & Seq
Forward (+)
91548895 .. 91553572
4678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00070620.1

Sequence Viewer

Length: 717 bp
ATGTGGAGAGAGGGACAAGCATTGGGAACAGTTGATCCTTCTTTGAGTTCATACCCTGCTCATGAGGTTTCAAGATGCATCCACATCGGGCTACTATGCGTGCAAGAATCTACAACAGATCGGCCAACAATGTCGGAAGTAGTTTACATGTTGAGCAAAGAAACACCTCTTACGTCTCCTAAGAAACCTGCATTCATATTACAATCCAGCAATCCAAACTCAGAAGCACCAAGAAGAGGACCTTCTCTAAATAATGAAAGTAAAGCAACCGAGATTGTAACTAGCGAGCAAATAAACGAAGGAAACAGACGGAAATTCTACATAAGCAAAAGATTCAAATCATCTTGCTCGGCCGATTCCCACCGTCGATCGCCGATCAAACACCGTTGTTGCGTCTCAATCCACCTTCATGCACCGCGATGCTTCGGTTCCTCCCACTTCAAATCTTACAACAAATTGAAATTGTGCATTAAGGCTTCGCCGCTCACTCCGAGTTCATCCCTCGCCGCCGACGACTTAGCCACCACCACTCTTGTTCTCTCCTCCGACCCCTTTTTATACACCATTGATCGAAACTCGGACCCCGCCAGCCCTCCACTCTCAAATCACAGCTCAATCCCACCCCGCCATCCTCTCCGTCATTCCCTACATGCAACACCACCTCCACACCATCCTCACCGCAACTTCACCGGTCTAGTTGACAACTTCGGCCTCTAG

Protein Analysis

238

Amino Acids

26.35

Weight (kDa)

9.35

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 484
AccII CGCG 1 cut(s) 418
AciI CCGC 6 cut(s) 416, 482, 507, 585, 625, 679
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 2 cut(s) 122, 351
AcsI RAATTY 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 4 cut(s) 72, 337, 442, 460
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 1 cut(s) 612
AluI AGCT 1 cut(s) 612
Alw26I GTCTC 2 cut(s) 180, 400
AlwI GGATC 1 cut(s) 29
AoxI GGCC 3 cut(s) 122, 351, 709
ApoI RAATTY 1 cut(s) 314
AsiGI ACCGGT 1 cut(s) 689
AspS9I GGNCC 2 cut(s) 239, 580
AsuHPI GGTGA 2 cut(s) 668, 679
AvaII GGWCC 2 cut(s) 239, 580
BccI CCATC 2 cut(s) 636, 678
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcoDI GTCTC 2 cut(s) 180, 400
BfaI CTAG 3 cut(s) 282, 695, 715
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 482, 507
BlsI GCNGC 2 cut(s) 483, 508
Bme18I GGWCC 2 cut(s) 239, 580
BmgT120I GGNCC 2 cut(s) 239, 580
BmiI GGNNCC 2 cut(s) 430, 582
BmsI GCATC 3 cut(s) 65, 87, 410
BsaBI GATNNNNATC 1 cut(s) 337
BsaWI WCCGGW 1 cut(s) 689
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse118I RCCGGY 1 cut(s) 689
Bse8I GATNNNNATC 1 cut(s) 337
BseGI GGATG 4 cut(s) 78, 497, 628, 670
BseJI GATNNNNATC 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 532
BseX3I CGGCCG 1 cut(s) 351
Bsh1236I CGCG 1 cut(s) 418
Bsh1285I CGRYCG 2 cut(s) 354, 371
BshFI GGCC 3 cut(s) 124, 353, 711
BshTI ACCGGT 1 cut(s) 689
BsiEI CGRYCG 2 cut(s) 354, 371
BsiSI CCGG 1 cut(s) 690
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 2 cut(s) 180, 400
BsmBI CGTCTC 2 cut(s) 180, 400
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 3 cut(s) 124, 353, 711
Bsp143I GATC 5 cut(s) 34, 118, 368, 375, 568
BspACI CCGC 6 cut(s) 416, 482, 507, 585, 625, 679
BspANI GGCC 3 cut(s) 124, 353, 711
BspCNI CTCAG 1 cut(s) 233
BspFNI CGCG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 430, 582
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 689
BssMI GATC 5 cut(s) 34, 118, 368, 375, 568
Bst4CI ACNGT 3 cut(s) 31, 365, 386
Bst6I CTCTTC 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 101, 287, 589
BstDEI CTNAG 3 cut(s) 180, 220, 517
BstF5I GGATG 4 cut(s) 78, 497, 628, 670
BstFNI CGCG 1 cut(s) 418
BstKTI GATC 5 cut(s) 37, 121, 371, 378, 571
BstMAI GTCTC 2 cut(s) 180, 400
BstMBI GATC 5 cut(s) 34, 118, 368, 375, 568
BstMCI CGRYCG 2 cut(s) 354, 371
BstNSI RCATGY 2 cut(s) 151, 653
BstUI CGCG 1 cut(s) 418
BstZI CGGCCG 1 cut(s) 351
BsuRI GGCC 3 cut(s) 124, 353, 711
BtgZI GCGATG 1 cut(s) 433
BtsCI GGATG 4 cut(s) 78, 497, 628, 670
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 3 cut(s) 101, 287, 589
CciI TCATGA 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 2 cut(s) 239, 580
CseI GACGC 1 cut(s) 382
CspAI ACCGGT 1 cut(s) 689
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 4 cut(s) 62, 148, 410, 650
CviJI RGCY 8 cut(s) 91, 124, 353, 476, 521, 591, 612, 711
CviKI_1 RGCY 8 cut(s) 91, 124, 353, 476, 521, 591, 612, 711
DdeI CTNAG 3 cut(s) 180, 220, 517
DpnI GATC 5 cut(s) 36, 120, 370, 377, 570
DpnII GATC 5 cut(s) 34, 118, 368, 375, 568
EaeI YGGCCR 2 cut(s) 122, 351
EagI CGGCCG 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
EclXI CGGCCG 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 239, 580
Eco52I CGGCCG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 80
Esp3I CGTCTC 2 cut(s) 180, 400
FaeI CATG 4 cut(s) 65, 151, 413, 653
FaiI YATR 9 cut(s) 52, 63, 97, 149, 197, 323, 411, 559, 651
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FaqI GGGAC 1 cut(s) 27
FatI CATG 4 cut(s) 61, 147, 409, 649
FauI CCCGC 2 cut(s) 592, 632
Fnu4HI GCNGC 2 cut(s) 482, 507
FokI GGATG 4 cut(s) 65, 484, 615, 657
Fsp4HI GCNGC 2 cut(s) 482, 507
FspBI CTAG 3 cut(s) 282, 695, 715
GluI GCNGC 2 cut(s) 482, 507
HaeIII GGCC 3 cut(s) 124, 353, 711
HapII CCGG 1 cut(s) 690
HgaI GACGC 1 cut(s) 382
Hin1II CATG 4 cut(s) 65, 151, 413, 653
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HinfI GANTC 3 cut(s) 107, 333, 356
HpaII CCGG 1 cut(s) 690
HphI GGTGA 2 cut(s) 668, 679
Hpy166II GTNNAC 2 cut(s) 145, 700
Hpy188I TCNGA 5 cut(s) 136, 223, 492, 547, 580
Hpy188III TCNNGA 2 cut(s) 62, 72
Hpy8I GTNNAC 2 cut(s) 145, 700
Hpy99I CGWCG 2 cut(s) 369, 515
HpyAV CCTTC 4 cut(s) 48, 252, 293, 416
HpyCH4III ACNGT 3 cut(s) 31, 365, 386
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 6 cut(s) 78, 103, 191, 413, 468, 653
HpyF3I CTNAG 3 cut(s) 180, 220, 517
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 4 cut(s) 65, 151, 413, 653
Kzo9I GATC 5 cut(s) 34, 118, 368, 375, 568
LpnPI CCDG 5 cut(s) 69, 201, 220, 601, 703
LweI GCATC 3 cut(s) 65, 87, 410
MaeI CTAG 3 cut(s) 282, 695, 715
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 277
MalI GATC 5 cut(s) 36, 120, 370, 377, 570
MbiI CCGCTC 1 cut(s) 484
MboI GATC 5 cut(s) 34, 118, 368, 375, 568
MboII GAAGA 1 cut(s) 246
MluCI AATT 3 cut(s) 314, 455, 461
MmeI TCCRAC 2 cut(s) 114, 570
Mph1103I ATGCAT 1 cut(s) 80
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 2 cut(s) 408, 418
MspI CCGG 1 cut(s) 690
Mva1269I GAATGC 1 cut(s) 191
MvnI CGCG 1 cut(s) 418
NdeII GATC 5 cut(s) 34, 118, 368, 375, 568
NlaIII CATG 4 cut(s) 65, 151, 413, 653
NlaIV GGNNCC 2 cut(s) 430, 582
NmeAIII GCCGAG 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 80
NspI RCATGY 2 cut(s) 151, 653
PagI TCATGA 1 cut(s) 61
PciI ACATGT 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 3 cut(s) 107, 333, 356
PinAI ACCGGT 1 cut(s) 689
PkrI GCNGC 2 cut(s) 483, 508
Ple19I CGATCG 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 239
PscI ACATGT 1 cut(s) 147
Psp5II RGGWCCY 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 430, 582
PspPI GGNCC 2 cut(s) 239, 580
PspPPI RGGWCCY 1 cut(s) 239
PvuI CGATCG 1 cut(s) 371
RseI CAYNNNNRTG 2 cut(s) 408, 418
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 2 cut(s) 482, 507
Sau3AI GATC 5 cut(s) 34, 118, 368, 375, 568
Sau96I GGNCC 2 cut(s) 239, 580
SetI ASST 8 cut(s) 69, 169, 176, 190, 244, 408, 614, 664
SfaNI GCATC 3 cut(s) 65, 87, 410
SinI GGWCC 2 cut(s) 239, 580
SmiMI CAYNNNNRTG 2 cut(s) 408, 418
Sse9I AATT 3 cut(s) 314, 455, 461
SsiI CCGC 6 cut(s) 416, 482, 507, 585, 625, 679
SspMI CTAG 3 cut(s) 282, 695, 715
TaaI ACNGT 3 cut(s) 31, 365, 386
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 367, 571
TasI AATT 3 cut(s) 314, 455, 461
TauI GCSGC 2 cut(s) 484, 509
TfiI GAWTC 3 cut(s) 107, 333, 356
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TspDTI ATGAA 5 cut(s) 39, 184, 270, 398, 486
TspGWI ACGGA 2 cut(s) 325, 626
VpaK11BI GGWCC 2 cut(s) 239, 580
XapI RAATTY 1 cut(s) 314
XceI RCATGY 2 cut(s) 151, 653
XspI CTAG 3 cut(s) 282, 695, 715
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.