Rmu_sc0004371.1_g000010

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004371.1
OG0000201
Physical Location & Seq
Forward (+)
41398 .. 42247
850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004371.1_g000010.1.cds

Sequence Viewer

Length: 681 bp
atgtcactagactggcgtaagcggtttgacattattaatggcattgctcgagggctcctctatcttcatcaagactccagactcagagtaattcatcgagatctcaaagccggaaatattttattagacagtgaatttatcccaaaaatatctgactttggcctggctagaagtttgggaggaaatgaaactagagcagaaacgaatagagtggttggcacgtatggttatatgtctccagaatatgcaattgatgggttctactctaccaaatccgacgtctttagctttggtgtttcggtgttggagataataagtgggaagagaaacagaggattctataatccagaccacagcctaaacctccttggacatgcatggaagctatacacacaaggcaggtccattgaactgcttgatacatcagtaggggactcgactaatcgactagaggaagttctgcgatcggttcatgtaggactcttatgtgtgcagcaaaatccagaagataggccaagcatgtcagctgctgttctaatgttgagtggtgaaggtgcattgcctcaaccccagaaaccaggtttttatactgaaaggaatctgagtgagatcaaagtcgacgccgctcctaaaacatgttcagctaatgaagtcacttttacactattggaggcccgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

226

Amino Acids

25.2

Weight (kDa)

6.53

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 390
AccBSI CCGCTC 1 cut(s) 626
AccI GTMKAC 1 cut(s) 618
AciI CCGC 2 cut(s) 22, 624
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 2 cut(s) 279, 621
AflIII ACRYGT 1 cut(s) 635
AgsI TTSAA 1 cut(s) 410
AjnI CCWGG 2 cut(s) 162, 577
AluBI AGCT 4 cut(s) 288, 385, 527, 644
AluI AGCT 4 cut(s) 288, 385, 527, 644
Alw26I GTCTC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 48
AoxI GGCC 3 cut(s) 160, 512, 672
ApeKI GCWGC 2 cut(s) 493, 527
ApoI RAATTY 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AseI ATTAAT 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 402, 673
AsuHPI GGTGA 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 402
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanII GRGCYC 1 cut(s) 57
BbvI GCAGC 2 cut(s) 505, 514
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 164, 579
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 4 cut(s) 8, 168, 192, 449
BfuAI ACCTGC 1 cut(s) 390
BglII AGATCT 1 cut(s) 100
BisI GCNGC 3 cut(s) 494, 528, 624
BlsI GCNGC 3 cut(s) 495, 529, 625
Bme1390I CCNGG 2 cut(s) 164, 579
Bme18I GGWCC 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 402, 673
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 2 cut(s) 164, 579
BplI GAGNNNNNCTC 2 cut(s) 42, 74
BpmI CTGGAG 2 cut(s) 61, 222
BsaAI YACGTR 1 cut(s) 222
BsaHI GRCGYC 2 cut(s) 279, 621
BsaJI CCNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 17
Bse3DI GCAATG 2 cut(s) 42, 557
BseBI CCWGG 2 cut(s) 164, 579
BseDI CCNNGG 1 cut(s) 367
BseMI GCAATG 2 cut(s) 42, 557
BseMII CTCAG 2 cut(s) 97, 593
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 505, 514
BsgI GTGCAG 1 cut(s) 512
Bsh1285I CGRYCG 1 cut(s) 467
BshFI GGCC 3 cut(s) 162, 514, 674
BsiEI CGRYCG 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 446
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 446
BsnI GGCC 3 cut(s) 162, 514, 674
BsoBI CYCGRG 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 100, 464, 609
BspACI CCGC 2 cut(s) 22, 624
BspANI GGCC 3 cut(s) 162, 514, 674
BspCNI CTCAG 2 cut(s) 96, 594
BspLI GGNNCC 1 cut(s) 56
BspMI ACCTGC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 626
BsrDI GCAATG 2 cut(s) 42, 557
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 3 cut(s) 100, 464, 609
BssNI GRCGYC 2 cut(s) 279, 621
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 164, 579
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 317
BstACI GRCGYC 2 cut(s) 279, 621
BstBAI YACGTR 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 83, 602
BstKTI GATC 3 cut(s) 103, 467, 612
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 100, 464, 609
BstMCI CGRYCG 1 cut(s) 467
BstNI CCWGG 2 cut(s) 164, 579
BstNSI RCATGY 3 cut(s) 377, 523, 639
BstSCI CCNGG 2 cut(s) 162, 577
BstV1I GCAGC 2 cut(s) 505, 514
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 162, 514, 674
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 402, 673
CseI GACGC 1 cut(s) 629
CsiI ACCWGGT 1 cut(s) 577
CviAII CATG 5 cut(s) 374, 378, 473, 520, 636
DdeI CTNAG 2 cut(s) 83, 602
DpnI GATC 3 cut(s) 102, 466, 611
DpnII GATC 3 cut(s) 100, 464, 609
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 162, 577
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 379
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 5 cut(s) 377, 381, 476, 523, 639
FaqI GGGAC 1 cut(s) 446
FatI CATG 5 cut(s) 373, 377, 472, 519, 635
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 494, 528, 624
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 3 cut(s) 494, 528, 624
FspBI CTAG 4 cut(s) 8, 168, 192, 449
GluI GCNGC 3 cut(s) 494, 528, 624
GsuI CTGGAG 2 cut(s) 61, 222
HaeIII GGCC 3 cut(s) 162, 514, 674
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 629
Hin1I GRCGYC 2 cut(s) 279, 621
Hin1II CATG 5 cut(s) 377, 381, 476, 523, 639
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 6 cut(s) 74, 81, 336, 434, 480, 598
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 4 cut(s) 86, 154, 277, 603
Hpy188III TCNNGA 6 cut(s) 71, 78, 98, 239, 347, 503
Hpy8I GTNNAC 1 cut(s) 619
Hpy99I CGWCG 2 cut(s) 281, 623
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 2 cut(s) 221, 279
HpyCH4V TGCA 4 cut(s) 248, 377, 493, 557
HpyF3I CTNAG 2 cut(s) 83, 602
HpySE526I ACGT 2 cut(s) 221, 279
Hsp92I GRCGYC 2 cut(s) 279, 621
Hsp92II CATG 5 cut(s) 377, 381, 476, 523, 639
Kzo9I GATC 3 cut(s) 100, 464, 609
LmnI GCTCC 2 cut(s) 60, 631
Lsp1109I GCAGC 2 cut(s) 505, 514
MabI ACCWGGT 1 cut(s) 577
MaeI CTAG 4 cut(s) 8, 168, 192, 449
MaeII ACGT 2 cut(s) 221, 279
MaeIII GTNAC 2 cut(s) 3, 652
MalI GATC 3 cut(s) 102, 466, 611
MbiI CCGCTC 1 cut(s) 626
MboI GATC 3 cut(s) 100, 464, 609
MboII GAAGA 3 cut(s) 56, 334, 518
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 3 cut(s) 90, 134, 249
MlyI GAGTC 4 cut(s) 68, 75, 428, 474
MmeI TCCRAC 2 cut(s) 285, 300
MnlI CCTC 8 cut(s) 44, 68, 173, 326, 374, 445, 573, 664
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 164, 579
MunI CAATTG 1 cut(s) 249
MvaI CCWGG 2 cut(s) 164, 579
NdeII GATC 3 cut(s) 100, 464, 609
NlaIII CATG 5 cut(s) 377, 381, 476, 523, 639
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 3, 652
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 3 cut(s) 377, 523, 639
PaeR7I CTCGAG 1 cut(s) 48
PciI ACATGT 1 cut(s) 635
PfeI GAWTC 2 cut(s) 336, 598
PkrI GCNGC 3 cut(s) 495, 529, 625
Ple19I CGATCG 1 cut(s) 467
PleI GAGTC 4 cut(s) 68, 75, 428, 474
PpsI GAGTC 4 cut(s) 68, 75, 428, 474
Ppu21I YACGTR 1 cut(s) 222
PscI ACATGT 1 cut(s) 635
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 162, 577
PspGI CCWGG 2 cut(s) 162, 577
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 402, 673
PspXI VCTCGAGB 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 100
PvuI CGATCG 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 527
SalI GTCGAC 1 cut(s) 617
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 3 cut(s) 494, 528, 624
Sau3AI GATC 3 cut(s) 100, 464, 609
Sau96I GGNCC 2 cut(s) 402, 673
SchI GAGTC 4 cut(s) 68, 75, 428, 474
ScrFI CCNGG 2 cut(s) 164, 579
SduI GDGCHC 1 cut(s) 57
SexAI ACCWGGT 1 cut(s) 577
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 402
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 3 cut(s) 90, 134, 249
SsiI CCGC 2 cut(s) 22, 624
SspI AATATT 1 cut(s) 118
SspMI CTAG 4 cut(s) 8, 168, 192, 449
StyD4I CCNGG 2 cut(s) 162, 577
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 2 cut(s) 224, 282
TaqI TCGA 5 cut(s) 49, 97, 437, 445, 618
TasI AATT 3 cut(s) 90, 134, 249
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 2 cut(s) 336, 598
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 136
TseFI GTSAC 2 cut(s) 3, 652
TseI GCWGC 2 cut(s) 493, 527
Tsp45I GTSAC 2 cut(s) 3, 652
TspDTI ATGAA 5 cut(s) 56, 83, 201, 461, 663
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 402
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 1 cut(s) 134
XceI RCATGY 3 cut(s) 377, 523, 639
XhoI CTCGAG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 618
XspI CTAG 4 cut(s) 8, 168, 192, 449
ZraI GACGTC 1 cut(s) 280
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.