Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362785.1

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

43 .. 772

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362785.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaatcctaaaatttcagactttggcttggctagaatactagctggaggagatcagactggaggaaatactaagagagtggtcgggacatatggctacatggcacctgaatatgctgctgatgggctattttctgtgaaatccgatgtctttagcttcggcatattggtgctggagattataagtggaaggcgaaataagggtttttatcatccagacgatagccataatcttattggaaatgcttggagattgtggaatgaaggaaggcctttagaattgactgattcatggttagacagctcatgtaatctatcagatgtgttacgttgcattcaagttagtcttttgtgcgtgcaacatcatcctgaggatcggccaagcatggcttctgtggttataatgttgggaagtgatattgcattggctcaacctaaacaacctggtttctttatggaaaaggaacatgaaggaggccctgatgtaggtaatgaatcatcaaccaatgaaacatccatttcgcttttggaagctcggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

179

Amino Acids

19.6

Weight (kDa)

5.02

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	182, 401
AccB1I	GGYRCC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	2 cut(s)	373, 405
AluBI	AGCT	4 cut(s)	44, 156, 303, 533
AluI	AGCT	4 cut(s)	44, 156, 303, 533
AlwI	GGATC	1 cut(s)	381
AoxI	GGCC	3 cut(s)	269, 377, 475
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	444
BfaI	CTAG	2 cut(s)	33, 41
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	444
BpmI	CTGGAG	3 cut(s)	66, 81, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	64
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	3 cut(s)	211, 364, 512
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	3 cut(s)	271, 379, 477
BshNI	GGYRCC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	271, 379, 477
Bsp143I	GATC	2 cut(s)	52, 373
BspANI	GGCC	3 cut(s)	271, 379, 477
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	52, 373
Bst2UI	CCWGG	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	72, 369
BstENI	CCTNNNNNAGG	1 cut(s)	483
BstF5I	GGATG	3 cut(s)	211, 364, 512
BstKTI	GATC	2 cut(s)	55, 376
BstMBI	GATC	2 cut(s)	52, 373
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	271, 379, 477
BtsCI	GGATG	3 cut(s)	211, 364, 512
Cac8I	GCNNGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	476
CsiI	ACCWGGT	1 cut(s)	442
CviAII	CATG	5 cut(s)	100, 291, 306, 385, 467
DdeI	CTNAG	2 cut(s)	72, 369
DpnI	GATC	2 cut(s)	54, 375
DpnII	GATC	2 cut(s)	52, 373
EaeI	YGGCCR	1 cut(s)	377
Eco147I	AGGCCT	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	442
FaeI	CATG	5 cut(s)	103, 294, 309, 388, 470
FalI	AAGNNNNNCTT	4 cut(s)	330, 362, 373, 405
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	5 cut(s)	99, 290, 305, 384, 466
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	198, 351, 499
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	33, 41
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	3 cut(s)	66, 81, 194
HaeIII	GGCC	3 cut(s)	271, 379, 477
Hin1II	CATG	5 cut(s)	103, 294, 309, 388, 470
HinfI	GANTC	3 cut(s)	4, 287, 494
Hpy188I	TCNGA	4 cut(s)	19, 57, 145, 319
Hpy188III	TCNNGA	3 cut(s)	85, 215, 368
HpyAV	CCTTC	4 cut(s)	183, 257, 261, 464
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	3 cut(s)	333, 358, 422
HpyF3I	CTNAG	2 cut(s)	72, 369
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	5 cut(s)	103, 294, 309, 388, 470
Kzo9I	GATC	2 cut(s)	52, 373
LpnPI	CCDG	9 cut(s)	30, 45, 120, 158, 228, 381, 429, 456, 492
Lsp1109I	GCAGC	1 cut(s)	103
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	2 cut(s)	33, 41
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	2 cut(s)	54, 375
MboI	GATC	2 cut(s)	52, 373
MluCI	AATT	2 cut(s)	12, 278
MnlI	CCTC	4 cut(s)	41, 56, 364, 467
MslI	CAYNNNNRTG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	444
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	52, 373
NlaIII	CATG	5 cut(s)	103, 294, 309, 388, 470
NlaIV	GGNNCC	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	271
PctI	GAATGC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	4, 287, 494
PkrI	GCNGC	1 cut(s)	118
PsiI	TTATAA	2 cut(s)	182, 401
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	52, 373
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	444
SetI	ASST	9 cut(s)	46, 109, 158, 305, 331, 436, 445, 490, 535
SexAI	ACCWGGT	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	2 cut(s)	12, 278
SseBI	AGGCCT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	33, 41
StuI	AGGCCT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	442
TaiI	ACGT	1 cut(s)	331
TasI	AATT	2 cut(s)	12, 278
TfiI	GAWTC	3 cut(s)	4, 287, 494
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	17, 276, 279, 483, 507, 522
XagI	CCTNNNNNAGG	1 cut(s)	483
XapI	RAATTY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	2 cut(s)	233, 523
XspI	CTAG	2 cut(s)	33, 41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.