MD05G1220300.v1.1

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
35302420 .. 35303122
703 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1220300.v1.1.491

Sequence Viewer

Length: 255 bp
ATGGTGCTCGAGATAGTGAATGGGAAGAGAAACAAAGGATTTTCTCATCCAAGCCACAGCCTCAACCTGCTAGGACATCGAAATCCGGCTGCAGTTCTGATGTTGAGTGGTGAAAGTGCATTGTCTCAACCCCAAAAACCTGGTTTTTATAGCGAGAGGGATCTAGAGGACCTCAAAGTCGATCCTTGTGCAAACAAGGCTAGAGCATTTTCAGCTAATGAAGTCACTTTTACAGTAGTCGAGTTTGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

85

Amino Acids

9.24

Weight (kDa)

6.26

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 168, 176
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 2 cut(s) 168, 176
Ama87I CYCGRG 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 8
AvaII GGWCC 1 cut(s) 169
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 76
BcgI CGANNNNNNTGC 2 cut(s) 170, 204
BciT130I CCWGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 3 cut(s) 71, 164, 201
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 75
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 8
BsiSI CCGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 129
BsoBI CYCGRG 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 160, 181
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 75
BspPI GGATC 2 cut(s) 168, 176
BssMI GATC 2 cut(s) 160, 181
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 20
BstF5I GGATG 1 cut(s) 46
BstKTI GATC 2 cut(s) 163, 184
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 160, 181
BstMWI GCNNNNNNNGC 2 cut(s) 197, 212
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 160
BtsCI GGATG 1 cut(s) 46
BveI ACCTGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 169
CsiI ACCWGGT 1 cut(s) 139
CviJI RGCY 5 cut(s) 54, 60, 89, 200, 215
CviKI_1 RGCY 5 cut(s) 54, 60, 89, 200, 215
DpnI GATC 2 cut(s) 162, 183
DpnII GATC 2 cut(s) 160, 181
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 139
FaiI YATR 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 3 cut(s) 71, 164, 201
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 86
HpaII CCGG 1 cut(s) 86
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 99
Hpy188III TCNNGA 2 cut(s) 10, 164
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 92, 119, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 212
Kzo9I GATC 2 cut(s) 160, 181
LpnPI CCDG 4 cut(s) 80, 99, 126, 153
Lsp1109I GCAGC 1 cut(s) 76
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 3 cut(s) 71, 164, 201
MaeIII GTNAC 1 cut(s) 223
MalI GATC 2 cut(s) 162, 183
MboI GATC 2 cut(s) 160, 181
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 9
MnlI CCTC 4 cut(s) 71, 150, 160, 182
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 141
MvaI CCWGG 1 cut(s) 141
MwoI GCNNNNNNNGC 2 cut(s) 197, 212
NdeII GATC 2 cut(s) 160, 181
NmuCI GTSAC 1 cut(s) 223
PaeR7I CTCGAG 1 cut(s) 8
PkrI GCNGC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PstI CTGCAG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 160
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 160, 181
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 1 cut(s) 9
SetI ASST 4 cut(s) 69, 142, 174, 217
SexAI ACCWGGT 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 90
Sfr274I CTCGAG 1 cut(s) 8
SinI GGWCC 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
SspMI CTAG 3 cut(s) 71, 164, 201
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 4 cut(s) 9, 79, 180, 240
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 169
XbaI TCTAGA 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 8
XspI CTAG 3 cut(s) 71, 164, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.