Rmu_sc0015448.1_g000001

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015448.1
OG0000201
Physical Location & Seq
Reverse (-)
215 .. 758
544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015448.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
atgtctcccgagtacgtgattgatggccacttttcagtgaaatccgatgtctttagttttggagtgcttttgctagagatagtatgtggcagaaagaacagagggtttcatcatccagatcaccatcacagtcttctgggacatgcctggctactatggaacaaagaaaaggttttggaactattagatccatgcttggaggactcgtatgtcgagtttgaggtactaagatgtatacaagtgggtctattatgcgtgcaaaagcggcccatcgacagaccagtaatgtcatcagtggtgttcatgttaagcaatgagggagcaatgttgcctcaaccgaaggagcctggtttcttcacagaacgaagttccatggatggtgataccttcataagtgaaggaagaagcaaaacaggaaacatgcttaccattaccacgatggaagctcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

150

Amino Acids

17.04

Weight (kDa)

5.77

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 235
AciI CCGC 1 cut(s) 265
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 25
AfaI GTAC 2 cut(s) 14, 225
AjnI CCWGG 2 cut(s) 146, 346
AluBI AGCT 1 cut(s) 446
AluI AGCT 1 cut(s) 446
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 8
AoxI GGCC 2 cut(s) 25, 266
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 113, 392
AvaI CYCGRG 1 cut(s) 8
BalI TGGCCA 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 125
BccI CCATC 5 cut(s) 17, 132, 278, 371, 433
BciT130I CCWGG 2 cut(s) 148, 348
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 148, 348
BmeT110I CYCGRG 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 2 cut(s) 148, 348
BpiI GAAGAC 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bse1I ACTGG 1 cut(s) 281
Bse3DI GCAATG 2 cut(s) 319, 330
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 2 cut(s) 148, 348
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 112, 382
BseJI GATNNNNATC 1 cut(s) 123
BseMI GCAATG 2 cut(s) 319, 330
BseNI ACTGG 1 cut(s) 281
BshFI GGCC 2 cut(s) 27, 268
BsiHKCI CYCGRG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 153
BsnI GGCC 2 cut(s) 27, 268
BsoBI CYCGRG 1 cut(s) 8
Bsp143I GATC 2 cut(s) 118, 187
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 1 cut(s) 265
BspANI GGCC 2 cut(s) 27, 268
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 319, 330
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 372
BssMI GATC 2 cut(s) 118, 187
BssNAI GTATAC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 372
Bst1107I GTATAC 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 148, 348
Bst4CI ACNGT 1 cut(s) 131
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 227
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 2 cut(s) 112, 382
BstKTI GATC 2 cut(s) 121, 190
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 118, 187
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 2 cut(s) 148, 348
BstNSI RCATGY 2 cut(s) 146, 424
BstSCI CCNGG 2 cut(s) 146, 346
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 236
BsuRI GGCC 2 cut(s) 27, 268
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 112, 382
BtsIMutI CAGTG 2 cut(s) 42, 300
Cac8I GCNNGC 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 2 cut(s) 13, 224
CviAII CATG 5 cut(s) 143, 192, 304, 373, 421
CviJI RGCY 5 cut(s) 27, 151, 268, 346, 446
CviKI_1 RGCY 5 cut(s) 27, 151, 268, 346, 446
CviQI GTAC 2 cut(s) 13, 224
DdeI CTNAG 1 cut(s) 227
DpnI GATC 2 cut(s) 120, 189
DpnII GATC 2 cut(s) 118, 187
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 146, 346
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 5 cut(s) 146, 195, 307, 376, 424
FaqI GGGAC 1 cut(s) 153
FatI CATG 5 cut(s) 142, 191, 303, 372, 420
FblI GTMKAC 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 2 cut(s) 99, 389
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 2 cut(s) 27, 268
Hin1II CATG 5 cut(s) 146, 195, 307, 376, 424
HinfI GANTC 1 cut(s) 203
HphI GGTGA 2 cut(s) 113, 392
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 8, 116
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 334, 392, 397
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 5 cut(s) 146, 195, 307, 376, 424
Kzo9I GATC 2 cut(s) 118, 187
LmnI GCTCC 2 cut(s) 320, 343
LpnPI CCDG 8 cut(s) 122, 129, 133, 160, 294, 333, 360, 399
MaeI CTAG 1 cut(s) 74
MaeII ACGT 1 cut(s) 15
MalI GATC 2 cut(s) 120, 189
MboI GATC 2 cut(s) 118, 187
MboII GAAGA 3 cut(s) 125, 346, 414
MflI RGATCY 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 27
MlyI GAGTC 1 cut(s) 197
MnlI CCTC 5 cut(s) 95, 193, 214, 310, 342
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
MseI TTAA 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 148, 348
MvaI CCWGG 2 cut(s) 148, 348
MwoI GCNNNNNNNGC 1 cut(s) 265
NcoI CCATGG 1 cut(s) 372
NdeII GATC 2 cut(s) 118, 187
NlaIII CATG 5 cut(s) 146, 195, 307, 376, 424
NlaIV GGNNCC 1 cut(s) 345
NspI RCATGY 2 cut(s) 146, 424
PkrI GCNGC 1 cut(s) 267
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 146, 346
PspGI CCWGG 2 cut(s) 146, 346
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 14, 225
RsaNI GTAC 2 cut(s) 13, 224
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 118, 187
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 2 cut(s) 148, 348
SetI ASST 5 cut(s) 18, 174, 225, 389, 448
SsiI CCGC 1 cut(s) 265
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 2 cut(s) 146, 346
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 213, 273, 448
TauI GCSGC 1 cut(s) 268
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 2 cut(s) 42, 300
TspDTI ATGAA 3 cut(s) 98, 292, 379
TspRI CASTG 2 cut(s) 42, 300
XceI RCATGY 2 cut(s) 146, 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.