Prupe.4G031700_v2.0.a1

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000201
Physical Location & Seq
Reverse (-)
1471818 .. 1475278
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G031700.1

Sequence Viewer

Length: 1125 bp
ATGGTGCCGATTTTGGTAGTGTCTATTGCTATGGTATTCTTCTTCATTTGCTTTGGATGTTGGTTTGCAAAGAGGAAGAGAAAAGAATATCCGAGGGAAATGAAGAATGATGATAGTAGAAGAACACATCAAGACCTGACAATTTTTGACCTAGAGAGCATAGTTGCTGCTACAAACAATTTCTCTACTGCTAACAAGCTTGGCGAAGGTGGATTTGGCCCTGTCTACAAGGGTCTTTTAGCTAATGGACAAGAGGTGGCTGTGAAAAGACTATCAAAGAATTCAGGGCAAGGTTTAGAACAATTTAAGAATGAGGTTATGTTGACAGCAAAACTTCAGCACAGGAACCTGGTGAGGATCTTTGGTTGCTGCGTTGATGCCGGAGAAAAGATGTTGATATATGAATGTTTGGCTAACAAAAGCTTAGACTTCTTCATATTTGATAAAAGCAGAAGCTCATTGTTGGACTGGAAAAAGCGTTTTGAGATTATATTGGGAATAGCTCGAGGGGTCTTATATCTACATCAAGACTCAAGACTAAAAATTATCCACAGGGATTTAAAAGCTAGCAATGTCCTCTTGGATTCTACAATGAACCCAAAGATCTCAGATTTTGGAATGGCTAAAATGTTTGGGGAAGACCAAATCCAAGCAAATACAAACAGAGTGGTTGGAACATATGGCTACATGTCACCAGAATATGCAATGGAAGGGCGGTATTCAGAAAAATCTGATGTTTTCAGCTTCGGCGTTTTACTGCTAGAGATCATCAGTGGGAAAAGGAACACTAGTTATGATCCCTCCCCAAATTTGATTGGACAAATTTGGGATATGTGGAGAGAGGAGCAAGCATTAGCTATGGTTGATCCATCTTTGGGGGAGTCATATCCTGCTCATGAAGTTTCAAGATGCATCCAGATTGGGCTACTTTGCGTGCAAGAAAGTGCATCAGATAGGCCAACCATGTCGGAAGTTATTTTCATGTTGGGTAATGAAACAACTCTTCCCCATCCCAAGAAACCTGCATTTATATTACAATCATCCAGCAAACTAAACTCAGCAGCATCAAAAGGATCAACTACTTCTCTAAATGATGTAACGATAACGGTGCTCAAAGCACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

375

Amino Acids

42.01

Weight (kDa)

8.7

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1030
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 715
AclWI GGATC 4 cut(s) 365, 791, 860, 1081
AcsI RAATTY 3 cut(s) 280, 808, 822
AcuI CTGAAG 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 875
AflIII ACRYGT 1 cut(s) 687
AgsI TTSAA 1 cut(s) 906
AhlI ACTAGT 1 cut(s) 788
AjnI CCWGG 1 cut(s) 348
AjuI GAANNNNNNNTTGG 2 cut(s) 198, 230
AluBI AGCT 8 cut(s) 199, 242, 423, 456, 503, 566, 744, 857
AluI AGCT 8 cut(s) 199, 242, 423, 456, 503, 566, 744, 857
Alw21I GWGCWC 1 cut(s) 1113
AlwI GGATC 4 cut(s) 365, 791, 860, 1081
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 2 cut(s) 217, 956
ApeKI GCWGC 3 cut(s) 167, 369, 1061
ApoI RAATTY 3 cut(s) 280, 808, 822
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 364, 684
AsuNHI GCTAGC 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 504
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 1113
BbvI GCAGC 3 cut(s) 154, 356, 1073
BccI CCATC 2 cut(s) 877, 1017
BcgI CGANNNNNNTGC 2 cut(s) 1090, 1124
BciT130I CCWGG 1 cut(s) 350
BcuI ACTAGT 1 cut(s) 788
BfaI CTAG 4 cut(s) 152, 567, 761, 789
BfuAI ACCTGC 1 cut(s) 1030
BglII AGATCT 1 cut(s) 603
BisI GCNGC 3 cut(s) 168, 370, 1062
BlsI GCNGC 3 cut(s) 169, 371, 1063
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 6, 347
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 5 cut(s) 367, 899, 921, 956, 1073
BmtI GCTAGC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 517
BsaJI CCNNGG 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 875
Bse1I ACTGG 1 cut(s) 473
Bse3DI GCAATG 2 cut(s) 577, 711
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 92
BseGI GGATG 4 cut(s) 62, 912, 1009, 1040
BseLI CCNNNNNNNGG 1 cut(s) 875
BseMI GCAATG 2 cut(s) 577, 711
BseMII CTCAG 2 cut(s) 621, 1071
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 1 cut(s) 857
BseXI GCAGC 3 cut(s) 154, 356, 1073
BshFI GGCC 2 cut(s) 219, 958
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 1113
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 381
BslI CCNNNNNNNGG 1 cut(s) 875
BsnI GGCC 2 cut(s) 219, 958
BsoBI CYCGRG 1 cut(s) 504
Bsp1286I GDGCHC 1 cut(s) 1113
Bsp143I GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
BspACI CCGC 1 cut(s) 715
BspANI GGCC 2 cut(s) 219, 958
BspCNI CTCAG 2 cut(s) 620, 1070
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 2 cut(s) 6, 347
BspMI ACCTGC 1 cut(s) 1030
BspOI GCTAGC 1 cut(s) 570
BspPI GGATC 4 cut(s) 365, 791, 860, 1081
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 577, 711
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 1108
Bst6I CTCTTC 2 cut(s) 71, 1008
BstC8I GCNNGC 4 cut(s) 568, 849, 935, 1120
BstDEI CTNAG 3 cut(s) 424, 607, 1057
BstF5I GGATG 4 cut(s) 62, 912, 1009, 1040
BstKTI GATC 6 cut(s) 360, 606, 768, 799, 868, 1076
BstMBI GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 154, 356, 1073
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 2 cut(s) 357, 603
BstYI RGATCY 2 cut(s) 357, 603
BsuRI GGCC 2 cut(s) 219, 958
BtsCI GGATG 4 cut(s) 62, 912, 1009, 1040
BtsIMutI CAGTG 1 cut(s) 778
BveI ACCTGC 1 cut(s) 1030
Cac8I GCNNGC 4 cut(s) 568, 849, 935, 1120
CciI TCATGA 1 cut(s) 895
Cfr13I GGNCC 1 cut(s) 218
CsiI ACCWGGT 1 cut(s) 348
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 4 cut(s) 688, 896, 964, 982
DdeI CTNAG 3 cut(s) 424, 607, 1057
DpnI GATC 6 cut(s) 359, 605, 767, 798, 867, 1075
DpnII GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
DraI TTTAAA 1 cut(s) 561
Eam1104I CTCTTC 2 cut(s) 71, 1008
EarI CTCTTC 2 cut(s) 71, 1008
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 914
FaeI CATG 4 cut(s) 691, 899, 967, 985
FatI CATG 4 cut(s) 687, 895, 963, 981
FauNDI CATATG 1 cut(s) 679
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 168, 370, 1062
FokI GGATG 4 cut(s) 69, 899, 996, 1027
Fsp4HI GCNGC 3 cut(s) 168, 370, 1062
FspBI CTAG 4 cut(s) 152, 567, 761, 789
GluI GCNGC 3 cut(s) 168, 370, 1062
HaeIII GGCC 2 cut(s) 219, 958
HapII CCGG 1 cut(s) 381
Hin1II CATG 4 cut(s) 691, 899, 967, 985
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HindIII AAGCTT 2 cut(s) 197, 421
HinfI GANTC 3 cut(s) 530, 584, 881
HpaII CCGG 1 cut(s) 381
HphI GGTGA 2 cut(s) 364, 684
Hpy166II GTNNAC 2 cut(s) 226, 324
Hpy188I TCNGA 6 cut(s) 93, 610, 724, 733, 952, 970
Hpy188III TCNNGA 6 cut(s) 131, 527, 534, 896, 906, 916
Hpy8I GTNNAC 2 cut(s) 226, 324
HpyAV CCTTC 2 cut(s) 200, 704
HpyCH4III ACNGT 1 cut(s) 1108
HpyCH4V TGCA 6 cut(s) 68, 704, 912, 937, 947, 1025
HpyF3I CTNAG 3 cut(s) 424, 607, 1057
Hsp92II CATG 4 cut(s) 691, 899, 967, 985
Kzo9I GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
LmnI GCTCC 1 cut(s) 844
Lsp1109I GCAGC 3 cut(s) 154, 356, 1073
LweI GCATC 5 cut(s) 367, 899, 921, 956, 1073
MabI ACCWGGT 1 cut(s) 348
MaeI CTAG 4 cut(s) 152, 567, 761, 789
MaeIII GTNAC 2 cut(s) 690, 1096
MalI GATC 6 cut(s) 359, 605, 767, 798, 867, 1075
MboI GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
MboII GAAGA 8 cut(s) 31, 34, 88, 115, 132, 424, 650, 995
MflI RGATCY 2 cut(s) 357, 603
MhlI GDGCHC 1 cut(s) 1113
MluCI AATT 7 cut(s) 141, 178, 280, 302, 543, 808, 822
MlyI GAGTC 2 cut(s) 524, 890
MmeI TCCRAC 3 cut(s) 444, 652, 948
MnlI CCTC 9 cut(s) 66, 87, 247, 307, 348, 500, 587, 811, 835
Mph1103I ATGCAT 1 cut(s) 914
MseI TTAA 2 cut(s) 306, 560
MspI CCGG 1 cut(s) 381
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 679
NdeII GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
NheI GCTAGC 1 cut(s) 566
NlaIII CATG 4 cut(s) 691, 899, 967, 985
NlaIV GGNNCC 2 cut(s) 6, 347
NmuCI GTSAC 1 cut(s) 690
NsiI ATGCAT 1 cut(s) 914
NspI RCATGY 1 cut(s) 691
PaeR7I CTCGAG 1 cut(s) 504
PagI TCATGA 1 cut(s) 895
PciI ACATGT 1 cut(s) 687
PfeI GAWTC 1 cut(s) 584
PkrI GCNGC 3 cut(s) 169, 371, 1063
PleI GAGTC 2 cut(s) 524, 889
PpsI GAGTC 2 cut(s) 524, 889
PscI ACATGT 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 6, 347
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 504
PsuI RGATCY 2 cut(s) 357, 603
SaqAI TTAA 2 cut(s) 306, 560
SatI GCNGC 3 cut(s) 168, 370, 1062
Sau3AI GATC 6 cut(s) 357, 603, 765, 796, 865, 1073
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 524, 890
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 1113
SexAI ACCWGGT 1 cut(s) 348
SfaNI GCATC 5 cut(s) 367, 899, 921, 956, 1073
Sfr274I CTCGAG 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 504
SmlI CTYRAG 2 cut(s) 504, 532
SmoI CTYRAG 2 cut(s) 504, 532
SpeI ACTAGT 1 cut(s) 788
Sse9I AATT 7 cut(s) 141, 178, 280, 302, 543, 808, 822
SsiI CCGC 1 cut(s) 715
SspMI CTAG 4 cut(s) 152, 567, 761, 789
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 1108
TaqI TCGA 1 cut(s) 505
TasI AATT 7 cut(s) 141, 178, 280, 302, 543, 808, 822
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 2 cut(s) 306, 560
Tru9I TTAA 2 cut(s) 306, 560
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 1 cut(s) 690
TseI GCWGC 3 cut(s) 167, 369, 1061
Tsp45I GTSAC 1 cut(s) 690
TspDTI ATGAA 8 cut(s) 34, 116, 417, 424, 608, 912, 970, 1008
TspRI CASTG 1 cut(s) 778
XapI RAATTY 3 cut(s) 280, 808, 822
XceI RCATGY 1 cut(s) 691
XhoI CTCGAG 1 cut(s) 504
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 4 cut(s) 152, 567, 761, 789
Zsp2I ATGCAT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.