Rmu_sc0006968.1_g000016

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006968.1
OG0000201
Physical Location & Seq
Forward (+)
71821 .. 73274
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006968.1_g000016.1.cds

Sequence Viewer

Length: 1101 bp
atgggagagaatggaataacgaatcagaacaatgacggacagaacgaagacatcgagctaccaatatttagtttgtccacaatagtcacagccactgataacttttcattcaacatgaaacttggagaaggtggctttgggactgtatacaagggtagtctagtggatgggctagaaattgctgtgaagaggctctcacgaagttcagggcaaggaccaactgagttcaaaaatgaagtactactaatagccaaacttcagcaccgaaatcttgtaaggctcctaggttgttgcattgagggagaagagagattgttgatttatgaatacatgcccaacaacagcttggacttctacctttttgatgaaaatcgagcaaggctattggcttggcctcaacgctttcacattatctgtgggatagccagaggtcttctttatctacatcaagattccagattgcggattattcatagagatcttaaagcaagtaatgttttgcttgataaggagatgaacccaaaaatctcagacttcggcatggctagaacatttggaggagatcagactgaaggagttacaagaagagttgttggaacctatggttatatggcaccagaatatgcaattgatggtcaattctctgtaaaatccgacgttttcagttttggcattttattgttggaaacattaagcgggaatagaagtagaggatttcatgatcctgttgataaccttaacctcattggacatgcatggcgattgtggaaagaaggaagatcttctgagttgattgatgaaagcttaagggactcctgcagtctgtcagaaatcttgtgttgcttccatattagtcttttatgtgtgcaagaacttcctgaggacaggccaaatatttcaaccgtgattctcatgttaggtggtggttctgccttgcctcagcccaaaaaaccaggtttttttggtagaagttcatctgcagcagattcttcttcatgtaagaatgcaacaacatcttcaattaacgatgaaacatcttcaagtaagaattatacatattcaaactacgactctacaataacagtattggagggtcgataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

366

Amino Acids

40.68

Weight (kDa)

5.49

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 613
AccI GTMKAC 1 cut(s) 147
AciI CCGC 2 cut(s) 463, 696
AclWI GGATC 1 cut(s) 716
AcuI CTGAAG 2 cut(s) 242, 591
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 462
AflII CTTAAG 1 cut(s) 805
AgsI TTSAA 6 cut(s) 112, 229, 900, 1020, 1041, 1062
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 3 cut(s) 58, 345, 804
AluI AGCT 3 cut(s) 58, 345, 804
AlwI GGATC 1 cut(s) 716
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 2 cut(s) 392, 887
ApeKI GCWGC 1 cut(s) 980
Asp700I GAANNNNTTC 1 cut(s) 781
AspA2I CCTAGG 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
AvrII CCTAGG 1 cut(s) 283
AxyI CCTNAGG 1 cut(s) 879
BanI GGYRCC 1 cut(s) 613
BbsI GAAGAC 2 cut(s) 54, 425
BbvCI CCTCAGC 1 cut(s) 939
BbvI GCAGC 1 cut(s) 992
BccI CCATC 2 cut(s) 161, 626
BciT130I CCWGG 1 cut(s) 954
BfaI CTAG 4 cut(s) 161, 173, 284, 546
BfmI CTRYAG 2 cut(s) 817, 978
BfrI CTTAAG 1 cut(s) 805
BglII AGATCT 2 cut(s) 478, 779
BisI GCNGC 1 cut(s) 981
BlnI CCTAGG 1 cut(s) 283
BlsI GCNGC 1 cut(s) 982
BmcAI AGTACT 1 cut(s) 240
Bme1390I CCNGG 1 cut(s) 954
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 3 cut(s) 281, 598, 615
BmrFI CCNGG 1 cut(s) 954
BpiI GAAGAC 2 cut(s) 54, 425
Bpu10I CCTNAGC 1 cut(s) 939
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 462
Bse21I CCTNAGG 1 cut(s) 879
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 1 cut(s) 283
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 1 cut(s) 462
BseMII CTCAG 5 cut(s) 213, 543, 777, 870, 953
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 1 cut(s) 992
BshFI GGCC 2 cut(s) 394, 889
BshNI GGYRCC 1 cut(s) 613
BslFI GGGAC 2 cut(s) 154, 824
BslI CCNNNNNNNGG 1 cut(s) 462
BsmFI GGGAC 2 cut(s) 154, 824
BsmI GAATGC 1 cut(s) 1009
BsnI GGCC 2 cut(s) 394, 889
Bsp143I GATC 4 cut(s) 478, 562, 721, 779
BspACI CCGC 2 cut(s) 463, 696
BspANI GGCC 2 cut(s) 394, 889
BspCNI CTCAG 5 cut(s) 214, 542, 778, 871, 952
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 281, 598, 615
BspMAI CTGCAG 2 cut(s) 821, 982
BspPI GGATC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 613
BspTI CTTAAG 1 cut(s) 805
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 4 cut(s) 478, 562, 721, 779
BssNAI GTATAC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 283
Bst1107I GTATAC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 3 cut(s) 145, 904, 1084
Bst6I CTCTTC 3 cut(s) 182, 300, 580
BstAFI CTTAAG 1 cut(s) 805
BstDEI CTNAG 5 cut(s) 222, 529, 786, 879, 939
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 4 cut(s) 481, 565, 724, 782
BstMBI GATC 4 cut(s) 478, 562, 721, 779
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 2 cut(s) 334, 755
BstSCI CCNGG 1 cut(s) 952
BstSFI CTRYAG 2 cut(s) 817, 978
BstV1I GCAGC 1 cut(s) 992
BstV2I GAAGAC 2 cut(s) 54, 425
BstX2I RGATCY 2 cut(s) 478, 779
BstYI RGATCY 2 cut(s) 478, 779
BstZ17I GTATAC 1 cut(s) 148
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 2 cut(s) 394, 889
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 95
CciI TCATGA 1 cut(s) 718
Cfr13I GGNCC 1 cut(s) 215
CsiI ACCWGGT 1 cut(s) 952
Csp6I GTAC 1 cut(s) 239
CviAII CATG 8 cut(s) 115, 331, 541, 719, 752, 756, 913, 996
CviQI GTAC 1 cut(s) 239
DdeI CTNAG 5 cut(s) 222, 529, 786, 879, 939
DpnI GATC 4 cut(s) 480, 564, 723, 781
DpnII GATC 4 cut(s) 478, 562, 721, 779
Eam1104I CTCTTC 3 cut(s) 182, 300, 580
EarI CTCTTC 3 cut(s) 182, 300, 580
Eco130I CCWWGG 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 242, 591
Eco81I CCTNAGG 1 cut(s) 879
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 8 cut(s) 118, 334, 544, 722, 755, 759, 916, 999
FaqI GGGAC 2 cut(s) 154, 824
FatI CATG 8 cut(s) 114, 330, 540, 718, 751, 755, 912, 995
FauI CCCGC 1 cut(s) 689
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 981
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 981
FspBI CTAG 4 cut(s) 161, 173, 284, 546
GluI GCNGC 1 cut(s) 981
HaeIII GGCC 2 cut(s) 394, 889
Hin1II CATG 8 cut(s) 118, 334, 544, 722, 755, 759, 916, 999
HindIII AAGCTT 1 cut(s) 802
HinfI GANTC 6 cut(s) 22, 452, 812, 907, 986, 1070
Hpy166II GTNNAC 2 cut(s) 78, 148
Hpy188I TCNGA 6 cut(s) 27, 532, 567, 655, 787, 829
Hpy188III TCNNGA 5 cut(s) 198, 449, 456, 719, 878
Hpy8I GTNNAC 2 cut(s) 78, 148
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 3 cut(s) 122, 566, 767
HpyCH4III ACNGT 3 cut(s) 145, 904, 1084
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 7 cut(s) 294, 626, 755, 819, 868, 980, 1007
HpyF3I CTNAG 5 cut(s) 222, 529, 786, 879, 939
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 8 cut(s) 118, 334, 544, 722, 755, 759, 916, 999
Kzo9I GATC 4 cut(s) 478, 562, 721, 779
LmnI GCTCC 1 cut(s) 285
Lsp1109I GCAGC 1 cut(s) 992
MabI ACCWGGT 1 cut(s) 952
MaeI CTAG 4 cut(s) 161, 173, 284, 546
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 2 cut(s) 85, 577
MalI GATC 4 cut(s) 480, 564, 723, 781
MboI GATC 4 cut(s) 478, 562, 721, 779
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 478, 779
MluCI AATT 5 cut(s) 177, 627, 638, 1020, 1048
MlyI GAGTC 2 cut(s) 806, 1064
MmeI TCCRAC 3 cut(s) 574, 663, 678
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 781
MseI TTAA 5 cut(s) 483, 692, 738, 806, 1023
MspCI CTTAAG 1 cut(s) 805
MspR9I CCNGG 1 cut(s) 954
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 1009
MvaI CCWGG 1 cut(s) 954
NdeII GATC 4 cut(s) 478, 562, 721, 779
NlaIII CATG 8 cut(s) 118, 334, 544, 722, 755, 759, 916, 999
NlaIV GGNNCC 3 cut(s) 281, 598, 615
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 2 cut(s) 334, 755
PagI TCATGA 1 cut(s) 718
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 51
PctI GAATGC 1 cut(s) 1009
PdmI GAANNNNTTC 1 cut(s) 781
PfeI GAWTC 4 cut(s) 22, 452, 907, 986
PkrI GCNGC 1 cut(s) 982
PleI GAGTC 2 cut(s) 806, 1064
PpsI GAGTC 2 cut(s) 806, 1064
Psp6I CCWGG 1 cut(s) 952
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 3 cut(s) 281, 598, 615
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 2 cut(s) 821, 982
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 478, 779
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SaqAI TTAA 5 cut(s) 483, 692, 738, 806, 1023
SatI GCNGC 1 cut(s) 981
Sau3AI GATC 4 cut(s) 478, 562, 721, 779
Sau96I GGNCC 1 cut(s) 215
ScaI AGTACT 1 cut(s) 240
SchI GAGTC 2 cut(s) 806, 1064
ScrFI CCNGG 1 cut(s) 954
SexAI ACCWGGT 1 cut(s) 952
SfcI CTRYAG 2 cut(s) 817, 978
SinI GGWCC 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 805
SmoI CTYRAG 1 cut(s) 805
Sse9I AATT 5 cut(s) 177, 627, 638, 1020, 1048
SsiI CCGC 2 cut(s) 463, 696
SspI AATATT 2 cut(s) 66, 895
SspMI CTAG 4 cut(s) 161, 173, 284, 546
StyD4I CCNGG 1 cut(s) 952
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 3 cut(s) 145, 904, 1084
TaiI ACGT 1 cut(s) 660
TaqI TCGA 3 cut(s) 54, 373, 1096
TasI AATT 5 cut(s) 177, 627, 638, 1020, 1048
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 4 cut(s) 22, 452, 907, 986
Tru1I TTAA 5 cut(s) 483, 692, 738, 806, 1023
Tru9I TTAA 5 cut(s) 483, 692, 738, 806, 1023
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 980
Tsp45I GTSAC 1 cut(s) 85
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 100
Vha464I CTTAAG 1 cut(s) 805
VpaK11BI GGWCC 1 cut(s) 215
XceI RCATGY 2 cut(s) 334, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmaJI CCTAGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 781
XspI CTAG 4 cut(s) 161, 173, 284, 546
ZrmI AGTACT 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.