Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000201

Physical Location & Seq

Genomic Coordinates Forward (+)

45631651 .. 45633345

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1332800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGACAAGGAGTCATTTGAGACCATCAACTCAACCCCATTCGAACGCAATCCCAAAATCAAAAAGGACAAAATGGGCAAACAAAATCAAAGCATTTTTATGTACATGCATTGAGTTTTACTCCTTTGTTAATGGTGTGCTTGATAATGGAAAGGAGATAGCAGTGAAAAGACTAGCCAAGAATTCTGGCCAAGGAATTGGAGAGTTTAAGAATGAAGTTGTGTTGCTTTCAAAGCTCCAACACAGGAACCTTGTGAGGATCATGGGTTGCTGCGTTCAAGATGAAGAGAAGATGCTGATCTATGAATACTTGGCAAACAAAAGTCTTGACTTTTTCATTTTCGCAAAAGAGGCGTTCTTGGATTGGACAAGACGCCTTGAGATAATATGTGGGATTGCTAGAGGGATTTTATATCTTCATCAGGATTCAAGATTAAGAATCATCCATAGAGATCTAAAGGCCAGCAATGTTTTGTTGGATTCTGCTATGAACCCCAAGATTTCAGATTTTGGTATGGCTAGGATATTTGGAGCTGAACAAATTGAAGCAAATACAAACCGTGTGGTTGGGACATACGGTTATATGTCACCAGAGTACGCAATGGAAGGATTTTTTTCAGTAAAGTCTGACGTATATAGCTTTGGCGTTTTACTACTAGAAATTGTTACTGGCAGAAAGAACACTAGCTACTACCACGATAGTTCTTACTCAAATTTAGTTGGACATGTTTGGGACTTATGGAAGGAAAGTAGAGCCTTGGAAATCATTGATTCATCGCTGGGAGAATCATACCATGTCAATGAAGTTCTAAGGTGTATTCACATTGCCCTCTTGTGCGTGCAAGAGCAAGCGAAGGATCGTCCACTCATGTCAGCAGTGGTTTCCATGTTGGGTAATGATGCAGCAATTCCTTCACCAAAGCAACCTGGATTTTTGTTGAAGAGTGGGGACCCATCAGCCAATACAAAAGGAGCTTCCTCTATAAATGACATGACCCATACAGAAGTAGAAGGTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

340

Amino Acids

38.14

Weight (kDa)

8.56

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 238	1.2e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	49 - 297	1.6e-43	Protein tyrosine and serine/threonine kinase
DUF3403	PF11883	299 - 339	2e-06	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21366
fragaria_vesca	FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica	MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica	Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis	pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis	RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata	RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora	Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii	Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa	Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha	Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana	Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	266, 864
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	181, 712
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	2 cut(s)	103, 596
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	5 cut(s)	231, 278, 429, 545, 940
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	925
AluBI	AGCT	5 cut(s)	235, 533, 639, 687, 974
AluI	AGCT	5 cut(s)	235, 533, 639, 687, 974
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	266, 864
AoxI	GGCC	2 cut(s)	187, 459
ApeKI	GCWGC	2 cut(s)	270, 902
ApoI	RAATTY	2 cut(s)	181, 712
AspS9I	GGNCC	1 cut(s)	949
AsuHPI	GGTGA	2 cut(s)	579, 906
AsuII	TTCGAA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	949
BalI	TGGCCA	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	257, 914
BccI	CCATC	2 cut(s)	31, 961
BciT130I	CCWGG	1 cut(s)	927
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	5 cut(s)	173, 399, 519, 656, 684
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	2 cut(s)	271, 903
BlsI	GCNGC	2 cut(s)	272, 904
Bme1390I	CCNGG	1 cut(s)	927
Bme18I	GGWCC	1 cut(s)	949
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	3 cut(s)	248, 950, 951
BmrFI	CCNGG	1 cut(s)	927
BmsI	GCATC	2 cut(s)	282, 889
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
Bpu14I	TTCGAA	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	373
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	190, 756
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	3 cut(s)	472, 606, 822
Bse8I	GATNNNNATC	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	2 cut(s)	190, 756
BseGI	GGATG	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	296
BseMI	GCAATG	3 cut(s)	472, 606, 822
BseNI	ACTGG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	257, 914
BseYI	CCCAGC	1 cut(s)	778
BshFI	GGCC	2 cut(s)	189, 461
BslFI	GGGAC	3 cut(s)	583, 746, 962
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	3 cut(s)	583, 746, 962
BsnI	GGCC	2 cut(s)	189, 461
Bso31I	GGTCTC	1 cut(s)	13
Bsp119I	TTCGAA	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	258, 297, 451, 856
BspANI	GGCC	2 cut(s)	189, 461
BspLI	GGNNCC	3 cut(s)	248, 950, 951
BspPI	GGATC	2 cut(s)	266, 864
BspT104I	TTCGAA	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	3 cut(s)	472, 606, 822
BsrGI	TGTACA	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	673
BssECI	CCNNGG	2 cut(s)	190, 756
BssMI	GATC	4 cut(s)	258, 297, 451, 856
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	190, 756
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	2 cut(s)	560, 578
Bst6I	CTCTTC	2 cut(s)	279, 935
BstACI	GRCGYC	1 cut(s)	373
BstAUI	TGTACA	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	463, 839, 849
BstDEI	CTNAG	1 cut(s)	809
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	4 cut(s)	261, 300, 454, 859
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	4 cut(s)	258, 297, 451, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	232, 350
BstNI	CCWGG	1 cut(s)	927
BstNSI	RCATGY	2 cut(s)	108, 728
BstSCI	CCNGG	1 cut(s)	925
BstV1I	GCAGC	2 cut(s)	257, 914
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	189, 461
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	2 cut(s)	168, 882
BtsIMutI	CAGTG	2 cut(s)	168, 882
Cac8I	GCNNGC	3 cut(s)	463, 839, 849
Cfr13I	GGNCC	1 cut(s)	949
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	102, 595
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	7 cut(s)	105, 262, 725, 794, 868, 886, 991
CviQI	GTAC	2 cut(s)	102, 595
DdeI	CTNAG	1 cut(s)	809
DpnI	GATC	4 cut(s)	260, 299, 453, 858
DpnII	GATC	4 cut(s)	258, 297, 451, 856
DriI	GACNNNNNGTC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	279, 935
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	2 cut(s)	279, 935
Eco130I	CCWWGG	2 cut(s)	190, 756
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	949
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	925
EcoT14I	CCWWGG	2 cut(s)	190, 756
EcoT22I	ATGCAT	1 cut(s)	110
ErhI	CCWWGG	2 cut(s)	190, 756
FaeI	CATG	7 cut(s)	108, 265, 728, 797, 871, 889, 994
FaqI	GGGAC	3 cut(s)	583, 746, 962
FatI	CATG	7 cut(s)	104, 261, 724, 793, 867, 885, 990
Fnu4HI	GCNGC	2 cut(s)	271, 903
FokI	GGATG	1 cut(s)	428
Fsp4HI	GCNGC	2 cut(s)	271, 903
FspBI	CTAG	5 cut(s)	173, 399, 519, 656, 684
GluI	GCNGC	2 cut(s)	271, 903
GsaI	CCCAGC	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	189, 461
HgaI	GACGC	1 cut(s)	381
Hin1I	GRCGYC	1 cut(s)	373
Hin1II	CATG	7 cut(s)	108, 265, 728, 797, 871, 889, 994
HinfI	GANTC	6 cut(s)	10, 425, 438, 479, 770, 785
HphI	GGTGA	2 cut(s)	579, 906
Hpy166II	GTNNAC	1 cut(s)	863
Hpy188I	TCNGA	2 cut(s)	505, 628
Hpy188III	TCNNGA	4 cut(s)	278, 326, 422, 429
Hpy8I	GTNNAC	1 cut(s)	863
HpyAV	CCTTC	5 cut(s)	599, 736, 847, 921, 1004
HpyCH4III	ACNGT	2 cut(s)	560, 578
HpyCH4IV	ACGT	1 cut(s)	630
HpyCH4V	TGCA	3 cut(s)	108, 841, 902
HpyF10VI	GCNNNNNNNGC	2 cut(s)	232, 350
HpyF3I	CTNAG	1 cut(s)	809
HpySE526I	ACGT	1 cut(s)	630
Hsp92I	GRCGYC	1 cut(s)	373
Hsp92II	CATG	7 cut(s)	108, 265, 728, 797, 871, 889, 994
KflI	GGGWCCC	1 cut(s)	949
Kzo9I	GATC	4 cut(s)	258, 297, 451, 856
LmnI	GCTCC	3 cut(s)	240, 530, 971
LpnPI	CCDG	9 cut(s)	171, 229, 407, 475, 603, 654, 764, 912, 939
Lsp1109I	GCAGC	2 cut(s)	257, 914
LweI	GCATC	2 cut(s)	282, 889
MaeI	CTAG	5 cut(s)	173, 399, 519, 656, 684
MaeII	ACGT	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	585, 664
MalI	GATC	4 cut(s)	260, 299, 453, 858
MboI	GATC	4 cut(s)	258, 297, 451, 856
MboII	GAAGA	4 cut(s)	296, 301, 407, 952
MflI	RGATCY	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	6 cut(s)	181, 195, 540, 660, 712, 906
MluNI	TGGCCA	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	19
MmeI	TCCRAC	3 cut(s)	262, 456, 700
MnlI	CCTC	5 cut(s)	249, 343, 395, 839, 988
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	3 cut(s)	129, 207, 434
MslI	CAYNNNNRTG	2 cut(s)	97, 798
Msp20I	TGGCCA	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	927
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	2 cut(s)	232, 350
NdeII	GATC	4 cut(s)	258, 297, 451, 856
NlaIII	CATG	7 cut(s)	108, 265, 728, 797, 871, 889, 994
NlaIV	GGNNCC	3 cut(s)	248, 950, 951
NmuCI	GTSAC	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	110
NspI	RCATGY	2 cut(s)	108, 728
NspV	TTCGAA	1 cut(s)	41
PciI	ACATGT	1 cut(s)	724
PfeI	GAWTC	5 cut(s)	425, 438, 479, 770, 785
PkrI	GCNGC	2 cut(s)	272, 904
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	949
PscI	ACATGT	1 cut(s)	724
Psp5II	RGGWCCY	1 cut(s)	949
Psp6I	CCWGG	1 cut(s)	925
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	3 cut(s)	248, 950, 951
PspPI	GGNCC	1 cut(s)	949
PspPPI	RGGWCCY	1 cut(s)	949
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
PsuI	RGATCY	1 cut(s)	451
RsaI	GTAC	2 cut(s)	103, 596
RsaNI	GTAC	2 cut(s)	102, 595
RseI	CAYNNNNRTG	2 cut(s)	97, 798
SaqAI	TTAA	3 cut(s)	129, 207, 434
SatI	GCNGC	2 cut(s)	271, 903
Sau3AI	GATC	4 cut(s)	258, 297, 451, 856
Sau96I	GGNCC	1 cut(s)	949
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	927
SfaNI	GCATC	2 cut(s)	282, 889
SfuI	TTCGAA	1 cut(s)	41
SinI	GGWCC	1 cut(s)	949
SmiMI	CAYNNNNRTG	2 cut(s)	97, 798
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	6 cut(s)	181, 195, 540, 660, 712, 906
SspMI	CTAG	5 cut(s)	173, 399, 519, 656, 684
StyD4I	CCNGG	1 cut(s)	925
StyI	CCWWGG	2 cut(s)	190, 756
TaaI	ACNGT	2 cut(s)	560, 578
TaiI	ACGT	1 cut(s)	633
TaqI	TCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	181, 195, 540, 660, 712, 906
TatI	WGTACW	1 cut(s)	101
TfiI	GAWTC	5 cut(s)	425, 438, 479, 770, 785
Tru1I	TTAA	3 cut(s)	129, 207, 434
Tru9I	TTAA	3 cut(s)	129, 207, 434
TscAI	CASTG	2 cut(s)	168, 882
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	2 cut(s)	270, 902
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	8 cut(s)	228, 297, 318, 325, 407, 503, 762, 816
TspRI	CASTG	2 cut(s)	168, 882
VpaK11BI	GGWCC	1 cut(s)	949
XapI	RAATTY	2 cut(s)	181, 712
XceI	RCATGY	2 cut(s)	108, 728
XspI	CTAG	5 cut(s)	173, 399, 519, 656, 684
Zsp2I	ATGCAT	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.