Rh1BG280000

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
41637205 .. 41644330
7126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG280000.1

Sequence Viewer

Length: 726 bp
ATGAACAAGATCGAATTGTTTATAAGTTTCTTACTTTTTCCAAATGAATCCAATCGTACACATTTAGATTGGAGGAGACGCTTTGAGATCATTTGTGGAATTACTAGAGGGATATTATATCTTCATCAAGATTCAAGATTAAGAATCATACACAGAGATCTAAGAGCGAGTAATGTTCTATTAGATGGTTCTATGAATCCCAAAATTGCAGATTTTGGTCTTGCTAGAATATTGGAGGGGGATCAAAGTGAAGCAAATACAAATCGCCTGGTTGGAACATATGGTTATATGTCACCAGAATATGCAATGCAAGGACTCTTCTCAGTAAAGTCAGATGTATATCGCTTTGGGGTAATAGTATTAGAAATCATTACTGGTCAAAAGAATAATAGTCACCATTCCAGCTCAAGTTTGGTTGAACATGTTTGGAACTCATGGAGAGAAGGTACTGCCTTAGAACTCGTTGATTCATCTCTCAGCGGATCATGCCCTGTCGATGAAGTTCTAAGATGCATCCAGATCGCCTTCTTGCGTTTACAAGAGCACGCCACTGACCGGCCAAACATGTCAGAAGTTCTTGTCATGCTGGGTAATGATGCAGCTCTTCCTGGACCAATGCGACCTGCATTTTTAATGGAGAAAAGTAATAACAGTGAAGACTCGTCAAACCGTGAAAGAACTTATTCTGTATATGAAGTGACACACACTACACTAGAAGCTCCCTAA

Protein Analysis

241

Amino Acids

27.35

Weight (kDa)

5.76

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 18 - 144 2.6e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 22 - 146 4.5e-24 Protein kinase domain
DUF3403 PF11883 198 - 240 5.5e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 631
AciI CCGC 1 cut(s) 480
AclWI GGATC 2 cut(s) 249, 490
AcoI YGGCCR 1 cut(s) 557
AfaI GTAC 2 cut(s) 58, 448
AfiI CCNNNNNNNGG 1 cut(s) 555
AflIII ACRYGT 2 cut(s) 421, 564
AgsI TTSAA 2 cut(s) 135, 419
AjnI CCWGG 2 cut(s) 267, 607
AluBI AGCT 3 cut(s) 405, 602, 719
AluI AGCT 3 cut(s) 405, 602, 719
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 249, 490
AoxI GGCC 1 cut(s) 557
ApeKI GCWGC 1 cut(s) 599
Asp700I GAANNNNTTC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 2 cut(s) 285, 386
AvaII GGWCC 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 1 cut(s) 611
BccI CCATC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 502, 536
BciT130I CCWGG 2 cut(s) 269, 609
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 105, 225, 713
BfuAI ACCTGC 1 cut(s) 631
BglII AGATCT 1 cut(s) 157
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 269, 609
Bme18I GGWCC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 269, 609
BmsI GCATC 3 cut(s) 500, 522, 586
BpiI GAAGAC 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 391
BsaBI GATNNNNATC 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 555
Bse118I RCCGGY 1 cut(s) 555
Bse1I ACTGG 1 cut(s) 379
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 2 cut(s) 269, 609
BseGI GGATG 1 cut(s) 513
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 555
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 2 cut(s) 336, 490
BseNI ACTGG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 611
BseYI CCCAGC 1 cut(s) 586
BshFI GGCC 1 cut(s) 559
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 1 cut(s) 556
BslI CCNNNNNNNGG 1 cut(s) 555
BsmAI GTCTC 1 cut(s) 70
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 559
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 6 cut(s) 9, 87, 157, 241, 482, 519
BspACI CCGC 1 cut(s) 480
BspANI GGCC 1 cut(s) 559
BspCNI CTCAG 2 cut(s) 335, 489
BspMI ACCTGC 1 cut(s) 631
BspPI GGATC 2 cut(s) 249, 490
BspQI GCTCTTC 1 cut(s) 609
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 1 cut(s) 555
BsrI ACTGG 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 555
BssMI GATC 6 cut(s) 9, 87, 157, 241, 482, 519
Bst2UI CCWGG 2 cut(s) 269, 609
Bst4CI ACNGT 2 cut(s) 653, 671
Bst6I CTCTTC 2 cut(s) 323, 609
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 5 cut(s) 161, 322, 454, 476, 506
BstF5I GGATG 1 cut(s) 513
BstKTI GATC 6 cut(s) 12, 90, 160, 244, 485, 522
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 6 cut(s) 9, 87, 157, 241, 482, 519
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 2 cut(s) 269, 609
BstNSI RCATGY 2 cut(s) 425, 568
BstSCI CCNGG 2 cut(s) 267, 607
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 1 cut(s) 559
BtsCI GGATG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 549, 658
BveI ACCTGC 1 cut(s) 631
Cac8I GCNNGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 611
CseI GACGC 1 cut(s) 87
Csp6I GTAC 2 cut(s) 57, 447
CviAII CATG 5 cut(s) 422, 435, 486, 565, 583
CviJI RGCY 4 cut(s) 405, 559, 602, 719
CviKI_1 RGCY 4 cut(s) 405, 559, 602, 719
CviQI GTAC 2 cut(s) 57, 447
DdeI CTNAG 5 cut(s) 161, 322, 454, 476, 506
DpnI GATC 6 cut(s) 11, 89, 159, 243, 484, 521
DpnII GATC 6 cut(s) 9, 87, 157, 241, 482, 519
EaeI YGGCCR 1 cut(s) 557
Eam1104I CTCTTC 2 cut(s) 323, 609
EarI CTCTTC 2 cut(s) 323, 609
Eco47I GGWCC 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 267, 607
EcoT22I ATGCAT 1 cut(s) 515
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 5 cut(s) 425, 438, 489, 568, 586
FatI CATG 5 cut(s) 421, 434, 485, 564, 582
FauNDI CATATG 1 cut(s) 280
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 3 cut(s) 105, 225, 713
GluI GCNGC 1 cut(s) 600
GsaI CCCAGC 1 cut(s) 590
HaeIII GGCC 1 cut(s) 559
HapII CCGG 1 cut(s) 556
HgaI GACGC 1 cut(s) 87
Hin1II CATG 5 cut(s) 425, 438, 489, 568, 586
HinfI GANTC 7 cut(s) 47, 131, 144, 196, 315, 467, 659
HpaII CCGG 1 cut(s) 556
HphI GGTGA 2 cut(s) 285, 386
Hpy166II GTNNAC 2 cut(s) 59, 536
Hpy188I TCNGA 2 cut(s) 334, 571
Hpy188III TCNNGA 3 cut(s) 128, 135, 517
Hpy8I GTNNAC 2 cut(s) 59, 536
HpyAV CCTTC 2 cut(s) 437, 535
HpyCH4III ACNGT 2 cut(s) 653, 671
HpyCH4V TGCA 6 cut(s) 209, 305, 310, 513, 599, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 5 cut(s) 161, 322, 454, 476, 506
Hsp92II CATG 5 cut(s) 425, 438, 489, 568, 586
Kzo9I GATC 6 cut(s) 9, 87, 157, 241, 482, 519
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 1 cut(s) 611
LweI GCATC 3 cut(s) 500, 522, 586
MaeI CTAG 3 cut(s) 105, 225, 713
MaeIII GTNAC 3 cut(s) 291, 392, 697
MalI GATC 6 cut(s) 11, 89, 159, 243, 484, 521
MboI GATC 6 cut(s) 9, 87, 157, 241, 482, 519
MboII GAAGA 4 cut(s) 113, 310, 596, 668
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 3 cut(s) 14, 99, 204
MlyI GAGTC 2 cut(s) 309, 653
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 3 cut(s) 66, 101, 229
Mph1103I ATGCAT 1 cut(s) 515
MroXI GAANNNNTTC 1 cut(s) 682
MseI TTAA 2 cut(s) 140, 632
MspA1I CMGCKG 1 cut(s) 480
MspI CCGG 1 cut(s) 556
MspR9I CCNGG 2 cut(s) 269, 609
MvaI CCWGG 2 cut(s) 269, 609
MwoI GCNNNNNNNGC 1 cut(s) 486
NdeI CATATG 1 cut(s) 280
NdeII GATC 6 cut(s) 9, 87, 157, 241, 482, 519
NlaIII CATG 5 cut(s) 425, 438, 489, 568, 586
NmuCI GTSAC 3 cut(s) 291, 392, 697
NsiI ATGCAT 1 cut(s) 515
NspI RCATGY 2 cut(s) 425, 568
PciI ACATGT 2 cut(s) 421, 564
PciSI GCTCTTC 1 cut(s) 609
PdmI GAANNNNTTC 1 cut(s) 682
PfeI GAWTC 5 cut(s) 47, 131, 144, 196, 467
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 1 cut(s) 601
PleI GAGTC 2 cut(s) 309, 653
PpsI GAGTC 2 cut(s) 309, 653
PscI ACATGT 2 cut(s) 421, 564
PsiI TTATAA 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 267, 607
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 2 cut(s) 267, 607
PspPI GGNCC 1 cut(s) 611
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 2 cut(s) 58, 448
RsaNI GTAC 2 cut(s) 57, 447
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 2 cut(s) 140, 632
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 6 cut(s) 9, 87, 157, 241, 482, 519
Sau96I GGNCC 1 cut(s) 611
SchI GAGTC 2 cut(s) 309, 653
ScrFI CCNGG 2 cut(s) 269, 609
SduI GDGCHC 1 cut(s) 546
SetI ASST 5 cut(s) 407, 448, 604, 625, 721
SfaNI GCATC 3 cut(s) 500, 522, 586
SinI GGWCC 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
Sse9I AATT 3 cut(s) 14, 99, 204
SsiI CCGC 1 cut(s) 480
SspI AATATT 1 cut(s) 231
SspMI CTAG 3 cut(s) 105, 225, 713
StyD4I CCNGG 2 cut(s) 267, 607
TaaI ACNGT 2 cut(s) 653, 671
TaqI TCGA 2 cut(s) 12, 495
TasI AATT 3 cut(s) 14, 99, 204
TfiI GAWTC 5 cut(s) 47, 131, 144, 196, 467
Tru1I TTAA 2 cut(s) 140, 632
Tru9I TTAA 2 cut(s) 140, 632
TscAI CASTG 2 cut(s) 556, 658
TseFI GTSAC 3 cut(s) 291, 392, 697
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 3 cut(s) 291, 392, 697
TspDTI ATGAA 7 cut(s) 17, 60, 113, 209, 459, 513, 708
TspRI CASTG 2 cut(s) 556, 658
VpaK11BI GGWCC 1 cut(s) 611
XceI RCATGY 2 cut(s) 425, 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 682
XspI CTAG 3 cut(s) 105, 225, 713
Zsp2I ATGCAT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.