Rh5BG252100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
31157937 .. 31160569
2633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG252100.1

Sequence Viewer

Length: 519 bp
ATGGCCACTCTTTCTTTCACCTTCACTGGAATTTACTTGTCCCTTTCTTTCTTCAAGACTTCAACTGCAGCAGCAGATGGTAGCATCTTGGTTTTCAAAAATGGCAACTTTGGGTTGGGTTCTTTCAGTCCTCAAGACGCAATTTTTCGTAGGAGTCTTTTAGCATCAACTCCTCCGGGAGATGTATGTGACACTGATGGCCGATGTGGCCCGAATGGACTGTGTGACATTAGTGACTCACAAGTTTGCAGTTGCTTAGAGGGATTCAAGCCCAAAGAAGAAGAGAACTGGAGCTTTGGGGAAAACTCGGATGGTTGTGTGCGTGTTACTCCATTGATGTGCCAAAAGAAAATGGGAAAGTATGGAGGCATGGGTCAGAACAATGGACAGAATGAAGACCTGGAGCTACCACTATATAGTTTGTCGACAATTATAGATGCCACCGATTCATTCAACAAGAAGCTCGGGGAGGGTGGTTTTGGACCTGTATACAAGGTTTCAACATTTAAGCATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

172

Amino Acids

18.48

Weight (kDa)

4.97

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 57 - 92 3.2e-09 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 425, 489
AcoI YGGCCR 2 cut(s) 3, 199
AcsI RAATTY 1 cut(s) 30
AgsI TTSAA 6 cut(s) 55, 63, 97, 268, 454, 501
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 3 cut(s) 294, 406, 463
AluI AGCT 3 cut(s) 294, 406, 463
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 3 cut(s) 3, 199, 208
ApeKI GCWGC 2 cut(s) 68, 71
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 209, 482
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 482
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 80, 83
BccI CCATC 3 cut(s) 71, 191, 305
BciT130I CCWGG 1 cut(s) 401
BcnI CCSGG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 2 cut(s) 69, 72
BlsI GCNGC 2 cut(s) 70, 73
Bme1390I CCNGG 2 cut(s) 177, 401
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 209, 482
BmrFI CCNGG 2 cut(s) 177, 401
BmsI GCATC 3 cut(s) 93, 173, 427
BpiI GAAGAC 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 310, 422
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 31, 293
BseBI CCWGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 316
BseNI ACTGG 2 cut(s) 31, 293
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 2 cut(s) 80, 83
BshFI GGCC 3 cut(s) 5, 201, 210
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 3 cut(s) 5, 201, 210
BsoBI CYCGRG 1 cut(s) 464
BspANI GGCC 3 cut(s) 5, 201, 210
BspMAI CTGCAG 1 cut(s) 70
BsrI ACTGG 2 cut(s) 31, 293
BssNAI GTATAC 1 cut(s) 490
Bst1107I GTATAC 1 cut(s) 490
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 175, 399
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 80, 83
BstV2I GAAGAC 1 cut(s) 402
BstZ17I GTATAC 1 cut(s) 490
BsuRI GGCC 3 cut(s) 5, 201, 210
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 24, 192
Cfr13I GGNCC 2 cut(s) 209, 482
CseI GACGC 1 cut(s) 146
CviAII CATG 1 cut(s) 370
CviJI RGCY 7 cut(s) 5, 201, 210, 271, 294, 406, 463
CviKI_1 RGCY 7 cut(s) 5, 201, 210, 271, 294, 406, 463
DdeI CTNAG 1 cut(s) 256
EaeI YGGCCR 2 cut(s) 3, 199
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 399
FaeI CATG 1 cut(s) 373
FaiI YATR 9 cut(s) 187, 363, 371, 415, 417, 434, 490, 513, 517
FaqI GGGAC 1 cut(s) 25
FatI CATG 1 cut(s) 369
FblI GTMKAC 2 cut(s) 425, 489
Fnu4HI GCNGC 2 cut(s) 69, 72
FokI GGATG 1 cut(s) 323
Fsp4HI GCNGC 2 cut(s) 69, 72
GluI GCNGC 2 cut(s) 69, 72
GsuI CTGGAG 2 cut(s) 310, 422
HaeIII GGCC 3 cut(s) 5, 201, 210
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 373
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 4 cut(s) 154, 236, 264, 446
HpaII CCGG 1 cut(s) 176
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 2 cut(s) 426, 490
Hpy188I TCNGA 2 cut(s) 310, 378
Hpy188III TCNNGA 2 cut(s) 55, 134
Hpy8I GTNNAC 2 cut(s) 426, 490
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 68, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 373
LmnI GCTCC 2 cut(s) 291, 403
LpnPI CCDG 6 cut(s) 12, 189, 274, 386, 413, 498
Lsp1109I GCAGC 2 cut(s) 80, 83
LweI GCATC 3 cut(s) 93, 173, 427
MaeIII GTNAC 4 cut(s) 188, 224, 233, 325
MboII GAAGA 4 cut(s) 43, 290, 293, 407
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 30, 141, 429
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 163, 230
MnlI CCTC 5 cut(s) 141, 183, 253, 359, 463
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 507
MslI CAYNNNNRTG 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 177, 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 207
NciI CCSGG 1 cut(s) 177
NlaIII CATG 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 188, 224, 233
PfeI GAWTC 2 cut(s) 264, 446
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 2 cut(s) 70, 73
PleI GAGTC 2 cut(s) 162, 230
PpsI GAGTC 2 cut(s) 162, 230
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspPI GGNCC 2 cut(s) 209, 482
PstI CTGCAG 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 337
SalI GTCGAC 1 cut(s) 424
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 2 cut(s) 69, 72
Sau96I GGNCC 2 cut(s) 209, 482
SchI GAGTC 2 cut(s) 163, 230
ScrFI CCNGG 2 cut(s) 177, 401
SetI ASST 7 cut(s) 23, 296, 402, 408, 465, 487, 498
SfaNI GCATC 3 cut(s) 93, 173, 427
SfcI CTRYAG 1 cut(s) 66
SfiI GGCCNNNNNGGCC 1 cut(s) 207
SinI GGWCC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 3 cut(s) 30, 141, 429
StyD4I CCNGG 2 cut(s) 175, 399
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 425
TasI AATT 3 cut(s) 30, 141, 429
TfiI GAWTC 2 cut(s) 264, 446
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 2 cut(s) 31, 199
TseFI GTSAC 3 cut(s) 188, 224, 233
TseI GCWGC 2 cut(s) 68, 71
Tsp45I GTSAC 3 cut(s) 188, 224, 233
TspDTI ATGAA 2 cut(s) 408, 438
TspRI CASTG 2 cut(s) 31, 199
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 1 cut(s) 30
XmiI GTMKAC 2 cut(s) 425, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.