RchiOBHm_Chr5g0036801

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000201
Physical Location & Seq
Reverse (-)
31072025 .. 31073463
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31560

Sequence Viewer

Length: 1053 bp
ATGGGAAAGTATGGAGGCATGGGTCAGAACAACGGACAGAATGAAGACCTGGAGCTACCACTGTATAGTTTGTCGACAATTATAGATGCCACCGATTCATTCAACATGAAGCTCGGGGAAGGTGGTTTTGGACCTGTATACAAGGGTAGACTAACAGATGGTCAAGAGATTGGCGTGAAGAGGCTCTCACAAACTTCTGGACAAGGTGCCACAGAGTTCAAAAATGAAGTGATACTTATAGCGAAACTTCAGCATCGAAATCTTGTAAAGCTCCTTGGTTGTTGCATTGAAGGGGAAGAGAAATTGCTGATCTATGAATATATGCCCAACAGAAGCATGGACTGCTACATTTTCGATCAAACACAAGGTCAGTTGGATTGGTCTCAGCGCTTCCACATTATCGAAGGTATAGCAAGGGGTCTTCTCTACTTGCATCAGGATTCCAGACTGAGGATTATTCATAGAGATCTTAAAGCAAGCAATGTGTTACTTAATGATGAGATGAAACCAAAAATCTCAGACTTTGGCATGGCTAGGCTTTTTGGAGGAGATGAGACTGAAGGAGTCACAAAAAGAGTAGTTGGAACCTACGGTTACATGGCACCAGAATATGCCATTAATGGTCAATTCTCTGTAAAATCTGACGTTTTTAGCTTTGGCATTTTATTGCTGGAGACATTAACCGGAAAGAGGAGTAGAGGGTTTCATGATCAGAAACACAACCTTAATCTAGTTGGACATGTCTGGAGATTGTGGAAAGAAGGAAGGTCCTTTGAGGCGATTGACGAATGCTTAAGGGAATCATGCACTCTATCAGAAGCATTGCATTGCATACATGTTGGTCTTCTATGTGTCCAAAAGCTTCCTGAAGATAGGCCGACCATGTGGGCGGTGGTTCTGATGCTAGGTGGTGAGAGTGCCTTGCCTCAACCCAAAAGGCCAGGTTTATATGTAGGAAAATATTCATCATCTGAAGTAGATTCATCTTCAAGTAAGAACGAAACATTCTCGTGTACAAATGAATGTTCAATAACTGTGGCGGAGGCTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

350

Amino Acids

39.15

Weight (kDa)

6.03

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 34 - 299 4.3e-47 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 35 - 295 1.4e-43 Protein kinase domain
DUF3403 PF11883 305 - 350 2.3e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000201)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21366
fragaria_vesca FvH4_3g15730 FvH4_3g21351 FvH4_3g21401 FvH4_3g21420
malus_domestica MD00G1151400.v1.1 MD03G1185300.v1.1 MD05G1217100.v1.1 MD05G1217400.v1.1 MD05G1220300.v1.1 MD05G1232800.v1.1 MD05G1332500.v1.1 MD05G1332800.v1.1 MD09G1059900.v1.1 MD10G1308300.v1.1 MD11G1231000.v1.1 MD12G1047500.v1.1 MD17G1273100.v1.1
prunus_persica Prupe.4G031700_v2.0.a1 Prupe.4G031700_v2.0.a1 Prupe.4G142200_v2.0.a1 Prupe.4G142700_v2.0.a1 Prupe.4G195200_v2.0.a1 Prupe.4G195600_v2.0.a1 Prupe.4G195800_v2.0.a1 Prupe.4G196000_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196200_v2.0.a1 Prupe.4G196400_v2.0.a1 Prupe.4G237800_v2.0.a1
pyrus_communis pycom03g16470 pycom03g16480 pycom03g16490 pycom03g16500 pycom03g16510 pycom05g19890 pycom05g20180 pycom05g20300 pycom05g30520 pycom09g02440 pycom11g20450
rosa_chinensis RchiOBHm_Chr1g0363501 RchiOBHm_Chr3g0477311 RchiOBHm_Chr3g0483581 RchiOBHm_Chr4g0411701 RchiOBHm_Chr5g0025991 RchiOBHm_Chr5g0026501 RchiOBHm_Chr5g0026541 RchiOBHm_Chr5g0026771 RchiOBHm_Chr5g0035631 RchiOBHm_Chr5g0035871 RchiOBHm_Chr5g0036451 RchiOBHm_Chr5g0036751 RchiOBHm_Chr5g0036771 RchiOBHm_Chr5g0036781 RchiOBHm_Chr5g0036801 RchiOBHm_Chr5g0036851
rosa_laevigata RLG00000031277 RLG00000032829 RLG00000032831 RLG00000032890 RLG00000032895 RLG00000032899 RLG00000032924 RLG00000033714 RLG00000033715 RLG00000033719 RLG00000033720 RLG00000033722 RLG00000033726
rosa_multiflora Rmu_co8109542.1_g000001 Rmu_co8147940.1_g000001 Rmu_co8162180.1_g000001 Rmu_co8193822.1_g000001 Rmu_co8362785.1_g000001 Rmu_co8410231.1_g000001 Rmu_co8422055.1_g000001 Rmu_sc0000149.1_g000048 Rmu_sc0000399.1_g000001 Rmu_sc0000555.1_g000013 Rmu_sc0000593.1_g000001 Rmu_sc0001348.1_g000035 Rmu_sc0004371.1_g000010 Rmu_sc0004371.1_g000019 Rmu_sc0005555.1_g000004 Rmu_sc0006059.1_g000074 Rmu_sc0006968.1_g000016 Rmu_sc0006968.1_g000018 Rmu_sc0006968.1_g000022 Rmu_sc0008732.1_g000004 Rmu_sc0010714.1_g000004 Rmu_sc0015364.1_g000001 Rmu_sc0015448.1_g000001 Rmu_sc0016543.1_g000005 Rmu_sc0025001.1_g000005
rosa_roxburghii Rroxscaffold_176G00431020 Rroxscaffold_1G00007210 Rroxscaffold_1G00044150 Rroxscaffold_1G00044170 Rroxscaffold_1G00044190 Rroxscaffold_1G00044220 Rroxscaffold_1G00044860 Rroxscaffold_1G00044870 Rroxscaffold_1G00052580 Rroxscaffold_1G00052940 Rroxscaffold_1G00053250 Rroxscaffold_1G00070620 Rroxscaffold_1G00070690 Rroxscaffold_1G00070720 Rroxscaffold_5G00353610 Rroxscaffold_6G00398200 Rroxscaffold_7G00204580
rosa_rugosa Rorug01G0307900 Rorug03G0207300 Rorug05G0086700 Rorug05G0156300 Rorug05G0157800 Rorug05G0157900 Rorug05G0157900 Rorug05G0157900
rosa_samantha Rh1BG280000 Rh3AG255400 Rh5AG189100 Rh5AG250500 Rh5BG252100 Rh5CG198600 Rh5CG203300 Rh5CG205400 Rh5CG206200 Rh5CG206600 Rh5CG281100 Rh5CG282300 Rh5CG283600 Rh5CG283800 Rh5CG284100 Rh5CG424200 Rh5DG181000 Rh5DG258000 Rh5DG260000 Rh5DG260400 Rh5DG260500
rosa_wichuraiana Rw1G028060 Rw3G023100 Rw5G016880 Rw5G017170 Rw5G022990 Rw5G023010 Rw5G023030 Rw5G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 601
AccI GTMKAC 3 cut(s) 74, 138, 148
AciI CCGC 2 cut(s) 890, 1040
AcuI CTGAAG 4 cut(s) 233, 579, 888, 993
AfaI GTAC 1 cut(s) 1015
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 450, 690
AflII CTTAAG 1 cut(s) 793
AflIII ACRYGT 2 cut(s) 739, 835
AgsI TTSAA 5 cut(s) 103, 220, 290, 990, 1029
AjnI CCWGG 2 cut(s) 48, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 5 cut(s) 55, 112, 271, 654, 862
AluI AGCT 5 cut(s) 55, 112, 271, 654, 862
Alw26I GTCTC 3 cut(s) 387, 548, 668
Ama87I CYCGRG 1 cut(s) 113
Aor51HI AGCGCT 1 cut(s) 389
AoxI GGCC 2 cut(s) 875, 938
ArsI GACNNNNNNTTYG 2 cut(s) 352, 384
AseI ATTAAT 1 cut(s) 618
Asp700I GAANNNNTTC 1 cut(s) 961
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 131, 768
AsuHPI GGTGA 1 cut(s) 923
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 2 cut(s) 131, 768
BanI GGYRCC 2 cut(s) 206, 601
BauI CACGAG 1 cut(s) 1009
BbsI GAAGAC 3 cut(s) 51, 413, 836
BccI CCATC 1 cut(s) 152
BciT130I CCWGG 2 cut(s) 50, 942
BclI TGATCA 1 cut(s) 709
BcoDI GTCTC 3 cut(s) 387, 548, 668
BfaI CTAG 3 cut(s) 534, 731, 905
BfoI RGCGCY 1 cut(s) 391
BfrI CTTAAG 1 cut(s) 793
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 50, 942
Bme18I GGWCC 2 cut(s) 131, 768
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 131, 768
BmiI GGNNCC 3 cut(s) 208, 586, 603
BmrFI CCNGG 2 cut(s) 50, 942
BmsI GCATC 4 cut(s) 76, 262, 442, 891
BpiI GAAGAC 3 cut(s) 51, 413, 836
BpmI CTGGAG 3 cut(s) 71, 692, 766
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 683
Bsc4I CCNNNNNNNGG 2 cut(s) 450, 690
Bse3DI GCAATG 3 cut(s) 487, 821, 826
BseBI CCWGG 2 cut(s) 50, 942
BseDI CCNNGG 1 cut(s) 274
BseLI CCNNNNNNNGG 2 cut(s) 450, 690
BseMI GCAATG 3 cut(s) 487, 821, 826
BseMII CTCAG 3 cut(s) 398, 440, 531
BseRI GAGGAG 2 cut(s) 561, 706
BshFI GGCC 2 cut(s) 877, 940
BshNI GGYRCC 2 cut(s) 206, 601
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 684
BslI CCNNNNNNNGG 2 cut(s) 450, 690
BsmAI GTCTC 3 cut(s) 387, 548, 668
BsmI GAATGC 1 cut(s) 794
BsnI GGCC 2 cut(s) 877, 940
Bso31I GGTCTC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 1013
Bsp143I GATC 4 cut(s) 309, 355, 466, 709
BspACI CCGC 2 cut(s) 890, 1040
BspANI GGCC 2 cut(s) 877, 940
BspCNI CTCAG 3 cut(s) 397, 441, 530
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 208, 586, 603
BspT107I GGYRCC 2 cut(s) 206, 601
BspTI CTTAAG 1 cut(s) 793
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 3 cut(s) 487, 821, 826
BsrGI TGTACA 1 cut(s) 1013
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 4 cut(s) 309, 355, 466, 709
BssNAI GTATAC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 274
Bst1107I GTATAC 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 1009
Bst2UI CCWGG 2 cut(s) 50, 942
Bst4CI ACNGT 3 cut(s) 63, 593, 1036
Bst6I CTCTTC 2 cut(s) 173, 291
BstAFI CTTAAG 1 cut(s) 793
BstAPI GCANNNNNTGC 1 cut(s) 342
BstAUI TGTACA 1 cut(s) 1013
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 3 cut(s) 384, 449, 517
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 4 cut(s) 312, 358, 469, 712
BstMAI GTCTC 3 cut(s) 387, 548, 668
BstMBI GATC 4 cut(s) 309, 355, 466, 709
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstNI CCWGG 2 cut(s) 50, 942
BstNSI RCATGY 2 cut(s) 743, 839
BstSCI CCNGG 2 cut(s) 48, 940
BstV2I GAAGAC 3 cut(s) 51, 413, 836
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BstZ17I GTATAC 1 cut(s) 139
BsuRI GGCC 2 cut(s) 877, 940
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 478
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 131, 768
Csp6I GTAC 1 cut(s) 1014
CspCI CAANNNNNGTGG 2 cut(s) 1017, 1052
CviQI GTAC 1 cut(s) 1014
DdeI CTNAG 3 cut(s) 384, 449, 517
DpnI GATC 4 cut(s) 311, 357, 468, 711
DpnII GATC 4 cut(s) 309, 355, 466, 709
Eam1104I CTCTTC 2 cut(s) 173, 291
EarI CTCTTC 2 cut(s) 173, 291
Eco130I CCWWGG 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 131, 768
Eco47III AGCGCT 1 cut(s) 389
Eco57I CTGAAG 4 cut(s) 233, 579, 888, 993
Eco88I CYCGRG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 768
EcoRII CCWGG 2 cut(s) 48, 940
EcoT14I CCWWGG 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 274
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 3 cut(s) 74, 138, 148
FspBI CTAG 3 cut(s) 534, 731, 905
GlaI GCGC 1 cut(s) 389
GsuI CTGGAG 3 cut(s) 71, 692, 766
HaeII RGCGCY 1 cut(s) 391
HaeIII GGCC 2 cut(s) 877, 940
HapII CCGG 1 cut(s) 684
HhaI GCGC 1 cut(s) 390
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 5 cut(s) 95, 440, 564, 800, 980
HpaII CCGG 1 cut(s) 684
HphI GGTGA 1 cut(s) 923
Hpy166II GTNNAC 4 cut(s) 75, 139, 149, 1014
Hpy188I TCNGA 7 cut(s) 27, 520, 643, 714, 817, 900, 973
Hpy188III TCNNGA 7 cut(s) 164, 198, 437, 444, 707, 745, 866
Hpy8I GTNNAC 4 cut(s) 75, 139, 149, 1014
HpyAV CCTTC 6 cut(s) 113, 284, 398, 554, 755, 759
HpyCH4III ACNGT 3 cut(s) 63, 593, 1036
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 5 cut(s) 285, 433, 807, 826, 831
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 3 cut(s) 384, 449, 517
HpySE526I ACGT 1 cut(s) 645
HspAI GCGC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 4 cut(s) 309, 355, 466, 709
LmnI GCTCC 2 cut(s) 52, 276
LweI GCATC 4 cut(s) 76, 262, 442, 891
MaeI CTAG 3 cut(s) 534, 731, 905
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 486, 565, 593
MalI GATC 4 cut(s) 311, 357, 468, 711
MboI GATC 4 cut(s) 309, 355, 466, 709
MboII GAAGA 7 cut(s) 56, 190, 308, 413, 836, 881, 978
MflI RGATCY 1 cut(s) 466
MluCI AATT 3 cut(s) 78, 302, 626
MlyI GAGTC 1 cut(s) 573
MmeI TCCRAC 3 cut(s) 354, 562, 715
MnlI CCTC 9 cut(s) 8, 174, 444, 539, 684, 692, 769, 936, 1036
MroXI GAANNNNTTC 1 cut(s) 961
MseI TTAA 6 cut(s) 471, 492, 618, 680, 726, 794
MslI CAYNNNNRTG 1 cut(s) 1009
MspCI CTTAAG 1 cut(s) 793
MspI CCGG 1 cut(s) 684
MspR9I CCNGG 2 cut(s) 50, 942
Mva1269I GAATGC 1 cut(s) 794
MvaI CCWGG 2 cut(s) 50, 942
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 4 cut(s) 309, 355, 466, 709
NlaIV GGNNCC 3 cut(s) 208, 586, 603
NmuCI GTSAC 1 cut(s) 565
NspI RCATGY 2 cut(s) 743, 839
PagI TCATGA 1 cut(s) 706
PciI ACATGT 2 cut(s) 739, 835
PctI GAATGC 1 cut(s) 794
PdmI GAANNNNTTC 1 cut(s) 961
PfeI GAWTC 4 cut(s) 95, 440, 800, 980
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 768
PscI ACATGT 2 cut(s) 739, 835
PshBI ATTAAT 1 cut(s) 618
Psp5II RGGWCCY 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 48, 940
PspGI CCWGG 2 cut(s) 48, 940
PspN4I GGNNCC 3 cut(s) 208, 586, 603
PspPI GGNCC 2 cut(s) 131, 768
PspPPI RGGWCCY 1 cut(s) 768
PsuI RGATCY 1 cut(s) 466
RsaI GTAC 1 cut(s) 1015
RsaNI GTAC 1 cut(s) 1014
RseI CAYNNNNRTG 1 cut(s) 1009
SalI GTCGAC 1 cut(s) 73
SaqAI TTAA 6 cut(s) 471, 492, 618, 680, 726, 794
Sau3AI GATC 4 cut(s) 309, 355, 466, 709
Sau96I GGNCC 2 cut(s) 131, 768
SchI GAGTC 1 cut(s) 573
ScrFI CCNGG 2 cut(s) 50, 942
SfaNI GCATC 4 cut(s) 76, 262, 442, 891
SinI GGWCC 2 cut(s) 131, 768
SmiMI CAYNNNNRTG 1 cut(s) 1009
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
Sse9I AATT 3 cut(s) 78, 302, 626
SsiI CCGC 2 cut(s) 890, 1040
SspI AATATT 1 cut(s) 962
SspMI CTAG 3 cut(s) 534, 731, 905
StyD4I CCNGG 2 cut(s) 48, 940
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 3 cut(s) 63, 593, 1036
TaiI ACGT 1 cut(s) 648
TaqI TCGA 5 cut(s) 74, 256, 354, 402, 1048
TasI AATT 3 cut(s) 78, 302, 626
TatI WGTACW 1 cut(s) 1013
TfiI GAWTC 4 cut(s) 95, 440, 800, 980
Tru1I TTAA 6 cut(s) 471, 492, 618, 680, 726, 794
Tru9I TTAA 6 cut(s) 471, 492, 618, 680, 726, 794
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 565
Tsp45I GTSAC 1 cut(s) 565
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 793
VpaK11BI GGWCC 2 cut(s) 131, 768
VspI ATTAAT 1 cut(s) 618
XceI RCATGY 2 cut(s) 743, 839
XcmI CCANNNNNNNNNTGG 2 cut(s) 334, 889
XmiI GTMKAC 3 cut(s) 74, 138, 148
XmnI GAANNNNTTC 1 cut(s) 961
XspI CTAG 3 cut(s) 534, 731, 905
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.