RLG00000033716

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000207
Physical Location & Seq
Forward (+)
31328543 .. 31329097
555 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033716

Sequence Viewer

Length: 555 bp
ATGAAGCTGGGATGGGACTTGAGAACCGGGCTTAACCGGAGACTAACGGAGTGGAAGAGTCGAGATGATCCTTCTCCTGGAGACTTCACATGGGAGATGCAGCTGCATAACTATCCTGAGCTAGCTATGTTCAGAGCGGGCAAAGAGTTTTGGAGAAGCGGTCCATGGAATGGAGTTTTATTCAGTGGAAAACCGCCAAAGGCGCTACCGGCTTTGAACTTCAGCTTCTTCATGGATGAGAATGAGGTTTACACAACAATTGGAATGGTGGACAAGTCAGCATTAGGGAGGATGATGGTGAATTTAACTGCAGATTACTACCGCCAGTTGTGGATTTGGTCTGAAGCAGACCGAAATTGGACACTCTATGCAACATTTCCTAGGGATCCTTGTGACAGTTATGCCAAGTATGGAGGAAATGGAAACTACGTGCTTAGTGCATCCCCTATGTATCAATGTTCAAACAAGTTCAGGCCTAGATCTGTGGAGAAGTGGAGCTTAAACAATTTTTTGCTAGGGTCGCAAGCGAAAGGCGCCATTGAGATGCAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

185

Amino Acids

21.37

Weight (kDa)

8.49

Isoelectric Point (pI)

35.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 51 - 160 1.4e-15 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 137
AciI CCGC 4 cut(s) 137, 159, 194, 322
AclWI GGATC 3 cut(s) 62, 380, 393
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 2 cut(s) 205, 363
AcyI GRCGYC 1 cut(s) 534
AfiI CCNNNNNNNGG 2 cut(s) 77, 170
AgsI TTSAA 2 cut(s) 217, 462
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 6 cut(s) 7, 103, 121, 125, 225, 498
AluI AGCT 6 cut(s) 7, 103, 121, 125, 225, 498
Alw26I GTCTC 2 cut(s) 34, 75
AlwI GGATC 3 cut(s) 62, 380, 393
AoxI GGCC 1 cut(s) 473
ApeKI GCWGC 2 cut(s) 100, 103
ApoI RAATTY 1 cut(s) 301
AspA2I CCTAGG 1 cut(s) 380
AspLEI GCGC 2 cut(s) 205, 536
AspS9I GGNCC 1 cut(s) 161
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 310
AsuNHI GCTAGC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 161
AvrII CCTAGG 1 cut(s) 380
BamHI GGATCC 1 cut(s) 385
BanI GGYRCC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 90, 112
BccI CCATC 2 cut(s) 6, 289
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 34, 75
BfaI CTAG 4 cut(s) 122, 381, 477, 515
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 2 cut(s) 206, 537
BglII AGATCT 1 cut(s) 479
BisI GCNGC 2 cut(s) 101, 104
BlnI CCTAGG 1 cut(s) 380
BlsI GCNGC 2 cut(s) 102, 105
Bme1390I CCNGG 2 cut(s) 28, 78
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 2 cut(s) 387, 535
BmrFI CCNGG 2 cut(s) 28, 78
BmsI GCATC 3 cut(s) 87, 449, 534
BmtI GCTAGC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 164, 380
BsaWI WCCGGW 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 170
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 164, 380
BseGI GGATG 4 cut(s) 17, 241, 297, 440
BseLI CCNNNNNNNGG 2 cut(s) 77, 170
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 90, 112
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 475
BshNI GGYRCC 1 cut(s) 533
BsiSI CCGG 3 cut(s) 27, 37, 209
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 2 cut(s) 77, 170
BsmAI GTCTC 2 cut(s) 34, 75
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 475
Bsp143I GATC 3 cut(s) 67, 385, 479
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 4 cut(s) 137, 159, 194, 322
BspANI GGCC 1 cut(s) 475
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 387, 535
BspMAI CTGCAG 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 125
BspPI GGATC 3 cut(s) 62, 380, 393
BspT107I GGYRCC 1 cut(s) 533
BsrBI CCGCTC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 164, 380
BssMI GATC 3 cut(s) 67, 385, 479
BssNI GRCGYC 1 cut(s) 534
BssT1I CCWWGG 2 cut(s) 164, 380
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 534
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 123, 139, 525
BstDEI CTNAG 2 cut(s) 117, 434
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 4 cut(s) 17, 241, 297, 440
BstH2I RGCGCY 2 cut(s) 206, 537
BstHHI GCGC 2 cut(s) 205, 536
BstKTI GATC 3 cut(s) 70, 388, 482
BstMAI GTCTC 2 cut(s) 34, 75
BstMBI GATC 3 cut(s) 67, 385, 479
BstMWI GCNNNNNNNGC 4 cut(s) 202, 209, 520, 533
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 26, 76
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 90, 112
BstX2I RGATCY 2 cut(s) 385, 479
BstYI RGATCY 2 cut(s) 385, 479
BsuRI GGCC 1 cut(s) 475
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 4 cut(s) 17, 241, 297, 440
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 3 cut(s) 123, 139, 525
CfoI GCGC 2 cut(s) 205, 536
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 3 cut(s) 90, 165, 232
CviJI RGCY 9 cut(s) 7, 31, 103, 121, 125, 212, 225, 475, 498
CviKI_1 RGCY 9 cut(s) 7, 31, 103, 121, 125, 212, 225, 475, 498
DdeI CTNAG 2 cut(s) 117, 434
DinI GGCGCC 1 cut(s) 535
DpnI GATC 3 cut(s) 69, 387, 481
DpnII GATC 3 cut(s) 67, 385, 479
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 164, 380
Eco147I AGGCCT 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 2 cut(s) 205, 363
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 164, 380
EgeI GGCGCC 1 cut(s) 535
EheI GGCGCC 1 cut(s) 535
ErhI CCWWGG 2 cut(s) 164, 380
FaeI CATG 3 cut(s) 93, 168, 235
FaiI YATR 9 cut(s) 91, 108, 128, 166, 233, 369, 402, 411, 449
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 89, 164, 231
FauI CCCGC 1 cut(s) 130
Fnu4HI GCNGC 2 cut(s) 101, 104
FokI GGATG 4 cut(s) 24, 248, 304, 427
Fsp4HI GCNGC 2 cut(s) 101, 104
FspBI CTAG 4 cut(s) 122, 381, 477, 515
GlaI GCGC 2 cut(s) 204, 535
GluI GCNGC 2 cut(s) 101, 104
GsaI CCCAGC 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 99
HaeII RGCGCY 2 cut(s) 206, 537
HaeIII GGCC 1 cut(s) 475
HapII CCGG 3 cut(s) 27, 37, 209
HhaI GCGC 2 cut(s) 205, 536
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 3 cut(s) 93, 168, 235
Hin6I GCGC 2 cut(s) 203, 534
HinP1I GCGC 2 cut(s) 203, 534
HinfI GANTC 1 cut(s) 58
HpaII CCGG 3 cut(s) 27, 37, 209
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 250, 271
Hpy188I TCNGA 2 cut(s) 134, 343
Hpy188III TCNNGA 2 cut(s) 62, 116
Hpy8I GTNNAC 2 cut(s) 250, 271
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 6 cut(s) 100, 106, 311, 371, 440, 547
HpyF10VI GCNNNNNNNGC 4 cut(s) 202, 209, 520, 533
HpyF3I CTNAG 2 cut(s) 117, 434
HpySE526I ACGT 1 cut(s) 429
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 3 cut(s) 93, 168, 235
HspAI GCGC 2 cut(s) 203, 534
KasI GGCGCC 1 cut(s) 533
Kzo9I GATC 3 cut(s) 67, 385, 479
LmnI GCTCC 1 cut(s) 495
LpnPI CCDG 8 cut(s) 40, 50, 63, 90, 129, 222, 338, 457
Lsp1109I GCAGC 2 cut(s) 90, 112
LweI GCATC 3 cut(s) 87, 449, 534
MaeI CTAG 4 cut(s) 122, 381, 477, 515
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 392
MalI GATC 3 cut(s) 69, 387, 481
MbiI CCGCTC 1 cut(s) 137
MboI GATC 3 cut(s) 67, 385, 479
MboII GAAGA 2 cut(s) 67, 220
MfeI CAATTG 1 cut(s) 258
MflI RGATCY 2 cut(s) 385, 479
MluCI AATT 4 cut(s) 258, 301, 355, 505
Mly113I GGCGCC 1 cut(s) 534
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 3 cut(s) 238, 282, 407
MseI TTAA 3 cut(s) 33, 305, 500
MslI CAYNNNNRTG 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 3 cut(s) 27, 37, 209
MspR9I CCNGG 2 cut(s) 28, 78
MunI CAATTG 1 cut(s) 258
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 202, 209, 520, 533
NarI GGCGCC 1 cut(s) 534
NciI CCSGG 1 cut(s) 28
NcoI CCATGG 1 cut(s) 164
NdeII GATC 3 cut(s) 67, 385, 479
NheI GCTAGC 1 cut(s) 121
NlaIII CATG 3 cut(s) 93, 168, 235
NlaIV GGNNCC 2 cut(s) 387, 535
NmuCI GTSAC 1 cut(s) 392
PceI AGGCCT 1 cut(s) 475
PflMI CCANNNNNTGG 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 2 cut(s) 102, 105
PleI GAGTC 1 cut(s) 66
PluTI GGCGCC 1 cut(s) 537
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 7
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 2 cut(s) 387, 535
PspPI GGNCC 1 cut(s) 161
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 385, 479
PvuII CAGCTG 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 3 cut(s) 33, 305, 500
SatI GCNGC 2 cut(s) 101, 104
Sau3AI GATC 3 cut(s) 67, 385, 479
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 28, 78
SetI ASST 8 cut(s) 9, 105, 123, 127, 227, 249, 432, 500
SfaNI GCATC 3 cut(s) 87, 449, 534
SfcI CTRYAG 1 cut(s) 309
SfoI GGCGCC 1 cut(s) 535
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 4 cut(s) 258, 301, 355, 505
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 4 cut(s) 137, 159, 194, 322
SspDI GGCGCC 1 cut(s) 533
SspMI CTAG 4 cut(s) 122, 381, 477, 515
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 26, 76
StyI CCWWGG 2 cut(s) 164, 380
TaaI ACNGT 1 cut(s) 398
TaiI ACGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 61
TaqII GACCGA 1 cut(s) 366
TasI AATT 4 cut(s) 258, 301, 355, 505
Tru1I TTAA 3 cut(s) 33, 305, 500
Tru9I TTAA 3 cut(s) 33, 305, 500
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 2 cut(s) 100, 103
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 2 cut(s) 17, 220
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 1 cut(s) 190
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 301
XmaJI CCTAGG 1 cut(s) 380
XspI CTAG 4 cut(s) 122, 381, 477, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.