Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000774.1

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Reverse (-)

2587 .. 6659

Gene Structure 4073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000774.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

atggatgatctttgttttgtggtgtttagtactagtttgttctctctgttgttcacaggttcatttgcagttgacaacatcaatccgtcgcagtctatcagtgataatggcagcgccttggtttcaagtgatggaacatttgagttgggtttcttcagtccaggtaacacgaaacatcgctacttgggaatttggtacaaaaacatcccagttaaaactgttgtttgggttgcaaatcggtgcaacccgattgatgactcatccggtgtgttgatgataaacagcacaggatatcttgtgctgctgggtcagaataagagtgtagtttggtggacaagtttagctaagtatacccagagtgtaatggtacagctattagattctggaaacttggtagtaagagatctgacagatggaaagtcattgtggcaaagcttcgattatccttctgatacattgttaccagaaatgaagatgggatgggactttaggataggtcttcagaggggattatcagcatggaaaaattcagaagacccatgtccaggggaattcacttatgggattgaaatggaacctcatgcataccctgaggcatattttcggaaaggtggtctgaaattttatcgttctggcccatggaatggcctaagattcagtggcgcagcagctctaaggcctaatccaatttatagtttcgattttgtgcataatgatgatgaagtttactacatgtacaaacttcaaagcaagtctgtaatttcaatcgtggtcttaaatggaaccacgagtacgcgccatcgccttacatggattgaagcagagcacacttggagggcctatgcaatagtacctagagatttctgtgatcaatatggcctctgtggagcaaatgcagagtgtatcgttagtaacagtccagtatgtcaatgtctacaaggattcacgcccaagtcaccagagaaatggaatttgacagactggtcacttggatgtacgcgcaagaaacccctaagctgccaggaaagtgataaagacgggtttgtcaaattcactgacttgaaattgccagatactacacattcttgggtgaacaaaagtacgaacatcaaggaatgcagagccaaatgcttgaacaactgttcctgtatggcttatacaagctcggacattaaagcaggaggttctggctgcgccatttggtttggtgatctactagatatcagaaagattccggatgctggccaagatctttacattcgaatgtcagcttcagagatagtgtttacaggaataatcttaattggctactacgtgtaccgaagcaggaccaaattaaaagagacagaaaaacgagaagaaggggcacaaaaggaggacctgaagctcccgcttttcaacataaccacgatagctactgctacagataacttttcagatgataagaagcttggagaaggtggctttggacctgtttacaaggggacactagcagatggacaagaatttgctgtgaagaggctttcaagcagttctggccaaggatttaatgagtttaggaatgaaattataatgattgccaaacttcagcaccgaaatctcgtaaagattcttggttgttgtgtgcaagaggagaaaatgctgatgtacgaatacatgtccaacggaagcctggactacttcatttttgatcaaaccagggaagaactactgttagattggcctaaacgtttccacatcatttgtggaattgctcggggtctcctctatctccaccaagattccaggctaaggattatacatagagatctaaaagcaagtaatgttctacttgatgatgaaatgaatcctaaaatttcagactttggcttggctagaatattaaccggaggagatcagactggaggaaatactaagagagtggtcgggacatatggctacatggcacctgaatatgctgctgatggggtattttctgtgaaatccgatgtctttagcttcggtatattggcttggagattgtggaatgaaggaaggcctttagaattgattgattcgtggttaaagagcttatgtgatctatcagaagtgttacgttgcatccaagttagtcttttgtgcgttcaacatcatcctgagaatcggccgagcatggcgtctgtggttataatgttgggaagtgatattgcattggctcaacctaaacaacctggtttccttctggaaaaggcttctgaaccaacccaggcgtcccagacaaatgctttcagtacaaaatggcaacccccacctcttgatgtcatagctatcaattgcgatgctgcctggaatagtactatctctggcggtctgggtggaattttgagggctcatagctgcaatttggctgggggtgcttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

800

Amino Acids

89.3

Weight (kDa)

6.17

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1571, 2168
AasI	GACNNNNNNGTC	2 cut(s)	982, 1043
AccB1I	GGYRCC	1 cut(s)	1945
AccB7I	CCANNNNNTGG	1 cut(s)	644
AccI	GTMKAC	2 cut(s)	350, 934
AccII	CGCG	2 cut(s)	796, 1000
AccIII	TCCGGA	1 cut(s)	1234
AciI	CCGC	2 cut(s)	1391, 2346
AclI	AACGTT	1 cut(s)	1729
AcoI	YGGCCR	3 cut(s)	1243, 1537, 2144
AcsI	RAATTY	9 cut(s)	189, 526, 551, 620, 970, 1049, 1505, 1854, 2358
AcuI	CTGAAG	5 cut(s)	139, 485, 1257, 1403, 1571
AcyI	GRCGYC	2 cut(s)	2156, 2249
AfiI	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1791
AflIII	ACRYGT	3 cut(s)	732, 1314, 1656
AhlI	ACTAGT	1 cut(s)	32
AjnI	CCWGG	9 cut(s)	160, 544, 1020, 1671, 1697, 1784, 2209, 2244, 2324
AjuI	GAANNNNNNNTTGG	2 cut(s)	1449, 1481
AloI	GAACNNNNNNTCC	2 cut(s)	1127, 1159
Alw21I	GWGCWC	1 cut(s)	828
Alw26I	GTCTC	2 cut(s)	1337, 1766
Ama87I	CYCGRG	1 cut(s)	1755
Aor13HI	TCCGGA	1 cut(s)	1234
ApeKI	GCWGC	9 cut(s)	111, 301, 665, 668, 1017, 1191, 1958, 2321, 2376
ApoI	RAATTY	9 cut(s)	189, 526, 551, 620, 970, 1049, 1505, 1854, 2358
AspLEI	GCGC	5 cut(s)	116, 665, 798, 1002, 1196
AspS9I	GGNCC	5 cut(s)	635, 837, 1329, 1378, 1469
AsuHPI	GGTGA	3 cut(s)	948, 1102, 1220
AsuII	TTCGAA	1 cut(s)	1261
AvaI	CYCGRG	1 cut(s)	1755
AvaII	GGWCC	3 cut(s)	1329, 1378, 1469
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	1 cut(s)	1369
BalI	TGGCCA	2 cut(s)	1245, 1539
BanI	GGYRCC	1 cut(s)	1945
BanII	GRGCYC	1 cut(s)	2371
BauI	CACGAG	1 cut(s)	787
BbsI	GAAGAC	2 cut(s)	491, 540
Bbv12I	GWGCWC	1 cut(s)	828
BbvI	GCAGC	9 cut(s)	123, 288, 677, 680, 1004, 1178, 1945, 2308, 2363
BccI	CCATC	7 cut(s)	125, 407, 469, 474, 807, 1490, 1958
BciT130I	CCWGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
BclI	TGATCA	2 cut(s)	868, 1690
BcoDI	GTCTC	2 cut(s)	1337, 1766
BcuI	ACTAGT	1 cut(s)	32
BfaI	CTAG	5 cut(s)	33, 855, 1217, 1490, 1875
BfmI	CTRYAG	1 cut(s)	1422
BfoI	RGCGCY	1 cut(s)	117
BglII	AGATCT	3 cut(s)	403, 1249, 1807
BisI	GCNGC	9 cut(s)	112, 302, 666, 669, 1018, 1192, 1959, 2322, 2377
BlsI	GCNGC	9 cut(s)	113, 303, 667, 670, 1019, 1193, 1960, 2323, 2378
BmcAI	AGTACT	2 cut(s)	31, 2335
Bme1390I	CCNGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
Bme18I	GGWCC	3 cut(s)	1329, 1378, 1469
BmeT110I	CYCGRG	1 cut(s)	1755
BmgT120I	GGNCC	5 cut(s)	635, 837, 1329, 1378, 1469
BmiI	GGNNCC	3 cut(s)	576, 784, 1947
BmrFI	CCNGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
BmrI	ACTGGG	1 cut(s)	203
BmsI	GCATC	3 cut(s)	1228, 2109, 2308
BmuI	ACTGGG	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	540
BpiI	GAAGAC	2 cut(s)	491, 540
BpmI	CTGGAG	1 cut(s)	1923
Bpu10I	CCTNAGC	2 cut(s)	1013, 1790
Bpu14I	TTCGAA	1 cut(s)	1261
BsaAI	YACGTR	1 cut(s)	1315
BsaHI	GRCGYC	2 cut(s)	2156, 2249
BsaI	GGTCTC	1 cut(s)	1766
BsaJI	CCNNGG	6 cut(s)	117, 545, 638, 1540, 1698, 2244
BsaWI	WCCGGW	3 cut(s)	263, 1234, 1886
Bsc4I	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1791
Bse1I	ACTGG	4 cut(s)	209, 920, 986, 1906
Bse21I	CCTNAGG	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	1234
BseBI	CCWGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
BseDI	CCNNGG	6 cut(s)	117, 545, 638, 1540, 1698, 2244
BseGI	GGATG	8 cut(s)	10, 204, 260, 485, 998, 1243, 2100, 2131
BseLI	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1791
BseMII	CTCAG	2 cut(s)	582, 2127
BseNI	ACTGG	4 cut(s)	209, 920, 986, 1906
BseRI	GAGGAG	3 cut(s)	1646, 1754, 1905
BseSI	GKGCMC	1 cut(s)	1369
BseX3I	CGGCCG	1 cut(s)	2144
BseXI	GCAGC	9 cut(s)	123, 288, 677, 680, 1004, 1178, 1945, 2308, 2363
BseYI	CCCAGC	2 cut(s)	304, 2387
Bsh1236I	CGCG	2 cut(s)	796, 1000
Bsh1285I	CGRYCG	1 cut(s)	2147
BshNI	GGYRCC	1 cut(s)	1945
BsiEI	CGRYCG	1 cut(s)	2147
BsiHKAI	GWGCWC	1 cut(s)	828
BsiHKCI	CYCGRG	1 cut(s)	1755
BsiSI	CCGG	3 cut(s)	264, 1235, 1887
BslFI	GGGAC	4 cut(s)	497, 1498, 1942, 2236
BslI	CCNNNNNNNGG	4 cut(s)	545, 644, 1241, 1791
BsmAI	GTCTC	2 cut(s)	1337, 1766
BsmFI	GGGAC	4 cut(s)	497, 1498, 1942, 2236
BsmI	GAATGC	1 cut(s)	1121
Bso31I	GGTCTC	1 cut(s)	1766
BsoBI	CYCGRG	1 cut(s)	1755
Bsp119I	TTCGAA	1 cut(s)	1261
Bsp1286I	GDGCHC	3 cut(s)	828, 1369, 2371
Bsp13I	TCCGGA	1 cut(s)	1234
Bsp1407I	TGTACA	1 cut(s)	735
Bsp143I	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
Bsp19I	CCATGG	1 cut(s)	638
BspACI	CCGC	2 cut(s)	1391, 2346
BspCNI	CTCAG	2 cut(s)	583, 2128
BspEI	TCCGGA	1 cut(s)	1234
BspFNI	CGCG	2 cut(s)	796, 1000
BspLI	GGNNCC	3 cut(s)	576, 784, 1947
BspT104I	TTCGAA	1 cut(s)	1261
BspT107I	GGYRCC	1 cut(s)	1945
BspTNI	GGTCTC	1 cut(s)	1766
BsrGI	TGTACA	1 cut(s)	735
BsrI	ACTGG	4 cut(s)	209, 920, 986, 1906
BssECI	CCNNGG	6 cut(s)	117, 545, 638, 1540, 1698, 2244
BssMI	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
BssNAI	GTATAC	1 cut(s)	351
BssNI	GRCGYC	2 cut(s)	2156, 2249
BssSI	CACGAG	1 cut(s)	787
BssT1I	CCWWGG	3 cut(s)	117, 638, 1540
Bst1107I	GTATAC	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	787
Bst2UI	CCWGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
Bst4CI	ACNGT	4 cut(s)	220, 917, 1142, 1713
Bst6I	CTCTTC	1 cut(s)	1511
BstACI	GRCGYC	2 cut(s)	2156, 2249
BstAUI	TGTACA	1 cut(s)	735
BstBAI	YACGTR	1 cut(s)	1315
BstBI	TTCGAA	1 cut(s)	1261
BstC8I	GCNNGC	1 cut(s)	1243
BstDEI	CTNAG	8 cut(s)	345, 591, 650, 674, 1013, 1790, 1914, 2136
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	8 cut(s)	10, 204, 260, 485, 998, 1243, 2100, 2131
BstFNI	CGCG	2 cut(s)	796, 1000
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	5 cut(s)	116, 665, 798, 1002, 1196
BstKTI	GATC	9 cut(s)	10, 406, 871, 1213, 1252, 1693, 1810, 1897, 2080
BstMAI	GTCTC	2 cut(s)	1337, 1766
BstMBI	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
BstMCI	CGRYCG	1 cut(s)	2147
BstMWI	GCNNNNNNNGC	2 cut(s)	1536, 2393
BstNI	CCWGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
BstNSI	RCATGY	2 cut(s)	736, 1660
BstPAI	GACNNNNGTC	1 cut(s)	540
BstSCI	CCNGG	9 cut(s)	160, 544, 1020, 1671, 1697, 1784, 2209, 2244, 2324
BstSFI	CTRYAG	1 cut(s)	1422
BstSLI	GKGCMC	1 cut(s)	1369
BstUI	CGCG	2 cut(s)	796, 1000
BstV1I	GCAGC	9 cut(s)	123, 288, 677, 680, 1004, 1178, 1945, 2308, 2363
BstV2I	GAAGAC	2 cut(s)	491, 540
BstX2I	RGATCY	3 cut(s)	403, 1249, 1807
BstXI	CCANNNNNNTGG	1 cut(s)	966
BstYI	RGATCY	3 cut(s)	403, 1249, 1807
BstZ17I	GTATAC	1 cut(s)	351
BstZI	CGGCCG	1 cut(s)	2144
Bsu36I	CCTNAGG	1 cut(s)	591
BtgI	CCRYGG	1 cut(s)	638
BtgZI	GCGATG	3 cut(s)	161, 785, 2331
BtsCI	GGATG	8 cut(s)	10, 204, 260, 485, 998, 1243, 2100, 2131
BtsIMutI	CAGTG	3 cut(s)	106, 664, 1053
Cac8I	GCNNGC	1 cut(s)	1243
CfoI	GCGC	5 cut(s)	116, 665, 798, 1002, 1196
Cfr13I	GGNCC	5 cut(s)	635, 837, 1329, 1378, 1469
CseI	GACGC	2 cut(s)	2145, 2238
CsiI	ACCWGGT	1 cut(s)	2209
CspCI	CAANNNNNGTGG	2 cut(s)	1724, 1759
CviAII	CATG	9 cut(s)	519, 540, 581, 639, 733, 810, 1657, 1942, 2152
DdeI	CTNAG	8 cut(s)	345, 591, 650, 674, 1013, 1790, 1914, 2136
DpnI	GATC	9 cut(s)	9, 405, 870, 1212, 1251, 1692, 1809, 1896, 2079
DpnII	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
DrdI	GACNNNNNNGTC	2 cut(s)	982, 1043
DseDI	GACNNNNNNGTC	2 cut(s)	982, 1043
EaeI	YGGCCR	3 cut(s)	1243, 1537, 2144
EagI	CGGCCG	1 cut(s)	2144
Eam1104I	CTCTTC	1 cut(s)	1511
EarI	CTCTTC	1 cut(s)	1511
EclXI	CGGCCG	1 cut(s)	2144
Eco130I	CCWWGG	3 cut(s)	117, 638, 1540
Eco147I	AGGCCT	2 cut(s)	679, 2038
Eco24I	GRGCYC	1 cut(s)	2371
Eco31I	GGTCTC	1 cut(s)	1766
Eco32I	GATATC	2 cut(s)	293, 1222
Eco47I	GGWCC	3 cut(s)	1329, 1378, 1469
Eco52I	CGGCCG	1 cut(s)	2144
Eco57I	CTGAAG	5 cut(s)	139, 485, 1257, 1403, 1571
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	1755
EcoO109I	RGGNCCY	2 cut(s)	837, 1378
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	9 cut(s)	160, 544, 1020, 1671, 1697, 1784, 2209, 2244, 2324
EcoRV	GATATC	2 cut(s)	293, 1222
EcoT14I	CCWWGG	3 cut(s)	117, 638, 1540
EcoT22I	ATGCAT	1 cut(s)	586
EcoT38I	GRGCYC	1 cut(s)	2371
ErhI	CCWWGG	3 cut(s)	117, 638, 1540
FaeI	CATG	9 cut(s)	522, 543, 584, 642, 736, 813, 1660, 1945, 2155
FalI	AAGNNNNNCTT	2 cut(s)	2097, 2129
FaqI	GGGAC	4 cut(s)	497, 1498, 1942, 2236
FatI	CATG	9 cut(s)	518, 539, 580, 638, 732, 809, 1656, 1941, 2151
FauI	CCCGC	1 cut(s)	1398
FauNDI	CATATG	1 cut(s)	1933
FbaI	TGATCA	2 cut(s)	868, 1690
FblI	GTMKAC	2 cut(s)	350, 934
Fnu4HI	GCNGC	9 cut(s)	112, 302, 666, 669, 1018, 1192, 1959, 2322, 2377
FokI	GGATG	8 cut(s)	17, 191, 247, 492, 1005, 1250, 2087, 2118
FriOI	GRGCYC	1 cut(s)	2371
Fsp4HI	GCNGC	9 cut(s)	112, 302, 666, 669, 1018, 1192, 1959, 2322, 2377
FspBI	CTAG	5 cut(s)	33, 855, 1217, 1490, 1875
GlaI	GCGC	5 cut(s)	115, 664, 797, 1001, 1195
GluI	GCNGC	9 cut(s)	112, 302, 666, 669, 1018, 1192, 1959, 2322, 2377
GsaI	CCCAGC	2 cut(s)	308, 2391
GsuI	CTGGAG	1 cut(s)	1923
HaeII	RGCGCY	1 cut(s)	117
HapII	CCGG	3 cut(s)	264, 1235, 1887
HgaI	GACGC	2 cut(s)	2145, 2238
HhaI	GCGC	5 cut(s)	116, 665, 798, 1002, 1196
Hin1I	GRCGYC	2 cut(s)	2156, 2249
Hin1II	CATG	9 cut(s)	522, 543, 584, 642, 736, 813, 1660, 1945, 2155
Hin6I	GCGC	5 cut(s)	114, 663, 796, 1000, 1194
HinP1I	GCGC	5 cut(s)	114, 663, 796, 1000, 1194
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	433, 1448
HpaII	CCGG	3 cut(s)	264, 1235, 1887
HphI	GGTGA	3 cut(s)	948, 1102, 1220
Hpy188III	TCNNGA	6 cut(s)	384, 1235, 1927, 2135, 2222, 2294
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	6 cut(s)	456, 1355, 1451, 2024, 2028, 2228
HpyCH4III	ACNGT	4 cut(s)	220, 917, 1142, 1713
HpyCH4IV	ACGT	3 cut(s)	1314, 1729, 2095
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1536, 2393
HpyF3I	CTNAG	8 cut(s)	345, 591, 650, 674, 1013, 1790, 1914, 2136
HpySE526I	ACGT	3 cut(s)	1314, 1729, 2095
Hsp92I	GRCGYC	2 cut(s)	2156, 2249
Hsp92II	CATG	9 cut(s)	522, 543, 584, 642, 736, 813, 1660, 1945, 2155
HspAI	GCGC	5 cut(s)	114, 663, 796, 1000, 1194
Kpn2I	TCCGGA	1 cut(s)	1234
Ksp22I	TGATCA	2 cut(s)	868, 1690
Kzo9I	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
LmnI	GCTCC	2 cut(s)	887, 1392
Lsp1109I	GCAGC	9 cut(s)	123, 288, 677, 680, 1004, 1178, 1945, 2308, 2363
LweI	GCATC	3 cut(s)	1228, 2109, 2308
MabI	ACCWGGT	1 cut(s)	2209
MaeI	CTAG	5 cut(s)	33, 855, 1217, 1490, 1875
MaeII	ACGT	3 cut(s)	1314, 1729, 2095
MaeIII	GTNAC	6 cut(s)	164, 459, 911, 954, 984, 2091
MalI	GATC	9 cut(s)	9, 405, 870, 1212, 1251, 1692, 1809, 1896, 2079
MboI	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
MboII	GAAGA	7 cut(s)	145, 484, 491, 545, 1370, 1528, 1715
MfeI	CAATTG	1 cut(s)	2311
MflI	RGATCY	3 cut(s)	403, 1249, 1807
MhlI	GDGCHC	3 cut(s)	828, 1369, 2371
MlsI	TGGCCA	2 cut(s)	1245, 1539
MluNI	TGGCCA	2 cut(s)	1245, 1539
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	1686
Mox20I	TGGCCA	2 cut(s)	1245, 1539
Mph1103I	ATGCAT	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	1234
MscI	TGGCCA	2 cut(s)	1245, 1539
MseI	TTAA	8 cut(s)	213, 776, 1173, 1301, 1337, 1548, 1883, 2063
MslI	CAYNNNNRTG	3 cut(s)	714, 991, 1262
Msp20I	TGGCCA	2 cut(s)	1245, 1539
MspI	CCGG	3 cut(s)	264, 1235, 1887
MspR9I	CCNGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
MunI	CAATTG	1 cut(s)	2311
Mva1269I	GAATGC	1 cut(s)	1121
MvaI	CCWGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
MvnI	CGCG	2 cut(s)	796, 1000
MwoI	GCNNNNNNNGC	2 cut(s)	1536, 2393
NcoI	CCATGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	1933
NdeII	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
NlaIII	CATG	9 cut(s)	522, 543, 584, 642, 736, 813, 1660, 1945, 2155
NlaIV	GGNNCC	3 cut(s)	576, 784, 1947
NmeAIII	GCCGAG	1 cut(s)	2172
NmuCI	GTSAC	2 cut(s)	954, 984
NsiI	ATGCAT	1 cut(s)	586
NspI	RCATGY	2 cut(s)	736, 1660
NspV	TTCGAA	1 cut(s)	1261
PceI	AGGCCT	2 cut(s)	679, 2038
PciI	ACATGT	2 cut(s)	732, 1656
PctI	GAATGC	1 cut(s)	1121
PfeI	GAWTC	9 cut(s)	380, 654, 942, 1231, 1609, 1781, 1846, 2054, 2140
PflMI	CCANNNNNTGG	1 cut(s)	644
PkrI	GCNGC	9 cut(s)	113, 303, 667, 670, 1019, 1193, 1960, 2323, 2378
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	1315
PpuMI	RGGWCCY	1 cut(s)	1378
PscI	ACATGT	2 cut(s)	732, 1656
PshAI	GACNNNNGTC	1 cut(s)	540
PsiI	TTATAA	2 cut(s)	1571, 2168
Psp1406I	AACGTT	1 cut(s)	1729
Psp5II	RGGWCCY	1 cut(s)	1378
Psp6I	CCWGG	9 cut(s)	160, 544, 1020, 1671, 1697, 1784, 2209, 2244, 2324
PspFI	CCCAGC	2 cut(s)	304, 2387
PspGI	CCWGG	9 cut(s)	160, 544, 1020, 1671, 1697, 1784, 2209, 2244, 2324
PspN4I	GGNNCC	3 cut(s)	576, 784, 1947
PspPI	GGNCC	5 cut(s)	635, 837, 1329, 1378, 1469
PspPPI	RGGWCCY	1 cut(s)	1378
PsrI	GAACNNNNNNTAC	2 cut(s)	775, 807
PsuI	RGATCY	3 cut(s)	403, 1249, 1807
RseI	CAYNNNNRTG	3 cut(s)	714, 991, 1262
SaqAI	TTAA	8 cut(s)	213, 776, 1173, 1301, 1337, 1548, 1883, 2063
SatI	GCNGC	9 cut(s)	112, 302, 666, 669, 1018, 1192, 1959, 2322, 2377
Sau3AI	GATC	9 cut(s)	7, 403, 868, 1210, 1249, 1690, 1807, 1894, 2077
Sau96I	GGNCC	5 cut(s)	635, 837, 1329, 1378, 1469
ScaI	AGTACT	2 cut(s)	31, 2335
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	9 cut(s)	162, 546, 1022, 1673, 1699, 1786, 2211, 2246, 2326
SduI	GDGCHC	3 cut(s)	828, 1369, 2371
SexAI	ACCWGGT	1 cut(s)	2209
SfaNI	GCATC	3 cut(s)	1228, 2109, 2308
SfcI	CTRYAG	1 cut(s)	1422
SfuI	TTCGAA	1 cut(s)	1261
SinI	GGWCC	3 cut(s)	1329, 1378, 1469
SmiMI	CAYNNNNRTG	3 cut(s)	714, 991, 1262
SpeI	ACTAGT	1 cut(s)	32
SseBI	AGGCCT	2 cut(s)	679, 2038
SsiI	CCGC	2 cut(s)	1391, 2346
SspI	AATATT	1 cut(s)	1881
SspMI	CTAG	5 cut(s)	33, 855, 1217, 1490, 1875
StuI	AGGCCT	2 cut(s)	679, 2038
StyD4I	CCNGG	9 cut(s)	160, 544, 1020, 1671, 1697, 1784, 2209, 2244, 2324
StyI	CCWWGG	3 cut(s)	117, 638, 1540
TaaI	ACNGT	4 cut(s)	220, 917, 1142, 1713
TaiI	ACGT	3 cut(s)	1317, 1732, 2098
TaqI	TCGA	3 cut(s)	438, 699, 1261
TatI	WGTACW	4 cut(s)	29, 735, 2270, 2333
TfiI	GAWTC	9 cut(s)	380, 654, 942, 1231, 1609, 1781, 1846, 2054, 2140
Tru1I	TTAA	8 cut(s)	213, 776, 1173, 1301, 1337, 1548, 1883, 2063
Tru9I	TTAA	8 cut(s)	213, 776, 1173, 1301, 1337, 1548, 1883, 2063
TscAI	CASTG	3 cut(s)	106, 664, 1060
TseFI	GTSAC	2 cut(s)	954, 984
TseI	GCWGC	9 cut(s)	111, 301, 665, 668, 1017, 1191, 1958, 2321, 2376
Tsp45I	GTSAC	2 cut(s)	954, 984
TspDTI	ATGAA	8 cut(s)	51, 485, 735, 1578, 1672, 1854, 1859, 2043
TspGWI	ACGGA	2 cut(s)	75, 1680
TspRI	CASTG	3 cut(s)	106, 664, 1060
Van91I	CCANNNNNTGG	1 cut(s)	644
VpaK11BI	GGWCC	3 cut(s)	1329, 1378, 1469
XapI	RAATTY	9 cut(s)	189, 526, 551, 620, 970, 1049, 1505, 1854, 2358
XceI	RCATGY	2 cut(s)	736, 1660
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1669, 1742
XmiI	GTMKAC	2 cut(s)	350, 934
XspI	CTAG	5 cut(s)	33, 855, 1217, 1490, 1875
ZrmI	AGTACT	2 cut(s)	31, 2335
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.