Rh5BG250600

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
30870313 .. 30871278
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG250600.1

Sequence Viewer

Length: 966 bp
ATGCAACCCGTAGAGTCGGTAGCTAATGAAGAAAAATTAAATTCAATGGGTGATCTGTGTTTTGTGGTGTTTAGTACCAGTTTGCTCTTTCTGTTGTTCACAGGTTCATTTGCAGTTGACAGCATCAGTCCCTCGCAGTCTATCAGTGATAATGACAGCGCCTTGGTTTCAAGTGATGGAACATTTATGTTGGGTTTCTTCAGTCCAGGTAACTCGAAACACTGTTACTTGGGAATTTGGTACAAAAACATCCCAGTTAGAACTGTTGTTTGGGTTGCAAATCGGTGCAACCCGATTGATGACTCATCCGGTGTGTTGATGATAAACAGCACAGGATATCTTGTGCTGTTGGGTCAGAATAAGAGTGTAGTTTGGTGGACAAGTTTAGCTAAGTATACCCAGAGTGTAATGGTACAGCTATTAGATTCTGGAAACTTGGTAGTAAGAGATCTGACAGATGGAAAGTCATTGTGGCAAAGCTTCGATTATCCTTCTGATACATTGTTACCAGAAATGAAGATGGGATGGGACTTTAGGACAGGTCTTAAAAGGGGATTATCAGCATGGAACAATTCAGAAGACCCATGTCCAGGGGAATTCACTTATGGAATTGAAATGGAACCTCATGCATACCCTGAGGCATATTTTCGGAAAGGTGGCCTGAAATTTTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGTGCACCAGAACTAAGGCCTAATCCAATTTATAGTTTCTATTTTGTGTATAATGATGATGAAGTTTACTACATGTACAAACTTCAAAGCAAGTCTGTAATTTCAATCATGGTCTTAAATGGAACCACTAGCACACGCGATCGCCTTACATGGATTGGAGCCGAGCAAACTTGGAGGGCCTATGCATCAGTACCTAGAGATTTCTGTGATCAATATAACCTCTGTGGAGCAAATGCAAATTGTATCATCATTCATCAGTAA

Protein Analysis

321

Amino Acids

36.2

Weight (kDa)

5.15

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 88 - 189 1.5e-35 D-mannose binding lectin
S_locus_glycop PF00954 224 - 317 1e-20 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 689
AccI GTMKAC 1 cut(s) 395
AccII CGCG 1 cut(s) 843
AcsI RAATTY 4 cut(s) 40, 234, 596, 665
AcuI CTGAAG 1 cut(s) 184
AfaI GTAC 5 cut(s) 76, 242, 414, 782, 897
AfiI CCNNNNNNNGG 2 cut(s) 590, 689
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 5 cut(s) 45, 171, 614, 791, 810
AjnI CCWGG 2 cut(s) 205, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AluBI AGCT 4 cut(s) 23, 389, 418, 480
AluI AGCT 4 cut(s) 23, 389, 418, 480
Alw21I GWGCWC 1 cut(s) 712
Alw44I GTGCAC 1 cut(s) 708
AoxI GGCC 5 cut(s) 658, 679, 691, 722, 882
ApaLI GTGCAC 1 cut(s) 708
ApoI RAATTY 4 cut(s) 40, 234, 596, 665
AsiSI GCGATCGC 1 cut(s) 847
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 680, 882
AsuHPI GGTGA 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 712
BccI CCATC 4 cut(s) 170, 452, 514, 519
BciT130I CCWGG 2 cut(s) 207, 591
BclI TGATCA 1 cut(s) 913
BfaI CTAG 2 cut(s) 834, 900
BfoI RGCGCY 1 cut(s) 162
BglII AGATCT 1 cut(s) 448
Bme1390I CCNGG 2 cut(s) 207, 591
BmgT120I GGNCC 2 cut(s) 680, 882
BmiI GGNNCC 3 cut(s) 621, 829, 865
BmrFI CCNGG 2 cut(s) 207, 591
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 2 cut(s) 132, 899
BmuI ACTGGG 1 cut(s) 248
BoxI GACNNNNGTC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 585
BsaJI CCNNGG 3 cut(s) 162, 590, 683
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 689
Bse1I ACTGG 2 cut(s) 78, 254
Bse21I CCTNAGG 1 cut(s) 636
BseBI CCWGG 2 cut(s) 207, 591
BseDI CCNNGG 3 cut(s) 162, 590, 683
BseGI GGATG 3 cut(s) 249, 305, 530
BseLI CCNNNNNNNGG 2 cut(s) 590, 689
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 2 cut(s) 78, 254
BseSI GKGCMC 1 cut(s) 712
Bsh1236I CGCG 1 cut(s) 843
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 5 cut(s) 660, 681, 693, 724, 884
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 1 cut(s) 712
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 2 cut(s) 114, 542
BslI CCNNNNNNNGG 2 cut(s) 590, 689
BsmFI GGGAC 2 cut(s) 114, 542
BsnI GGCC 5 cut(s) 660, 681, 693, 724, 884
Bsp1286I GDGCHC 1 cut(s) 712
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 4 cut(s) 52, 448, 844, 913
Bsp19I CCATGG 1 cut(s) 683
BspANI GGCC 5 cut(s) 660, 681, 693, 724, 884
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 843
BspLI GGNNCC 3 cut(s) 621, 829, 865
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 2 cut(s) 78, 254
BssECI CCNNGG 3 cut(s) 162, 590, 683
BssMI GATC 4 cut(s) 52, 448, 844, 913
BssNAI GTATAC 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 162, 683
Bst1107I GTATAC 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 207, 591
Bst4CI ACNGT 2 cut(s) 224, 265
BstAUI TGTACA 1 cut(s) 780
BstDEI CTNAG 4 cut(s) 390, 636, 695, 719
BstDSI CCRYGG 1 cut(s) 683
BstF5I GGATG 3 cut(s) 249, 305, 530
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 4 cut(s) 55, 451, 847, 916
BstMBI GATC 4 cut(s) 52, 448, 844, 913
BstMCI CGRYCG 1 cut(s) 847
BstNI CCWGG 2 cut(s) 207, 591
BstNSI RCATGY 1 cut(s) 781
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 205, 589
BstSLI GKGCMC 1 cut(s) 712
BstUI CGCG 1 cut(s) 843
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 396
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 5 cut(s) 660, 681, 693, 724, 884
BtgI CCRYGG 1 cut(s) 683
BtsCI GGATG 3 cut(s) 249, 305, 530
BtsIMutI CAGTG 3 cut(s) 151, 220, 709
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 680, 882
Csp6I GTAC 5 cut(s) 75, 241, 413, 781, 896
CviAII CATG 7 cut(s) 564, 585, 626, 684, 778, 814, 855
CviQI GTAC 5 cut(s) 75, 241, 413, 781, 896
DdeI CTNAG 4 cut(s) 390, 636, 695, 719
DpnI GATC 4 cut(s) 54, 450, 846, 915
DpnII GATC 4 cut(s) 52, 448, 844, 913
Eco130I CCWWGG 2 cut(s) 162, 683
Eco147I AGGCCT 1 cut(s) 724
Eco32I GATATC 1 cut(s) 338
Eco57I CTGAAG 1 cut(s) 184
Eco81I CCTNAGG 1 cut(s) 636
EcoO109I RGGNCCY 1 cut(s) 882
EcoRI GAATTC 1 cut(s) 596
EcoRII CCWGG 2 cut(s) 205, 589
EcoRV GATATC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 162, 683
EcoT22I ATGCAT 2 cut(s) 631, 892
ErhI CCWWGG 2 cut(s) 162, 683
FaeI CATG 7 cut(s) 567, 588, 629, 687, 781, 817, 858
FaqI GGGAC 2 cut(s) 114, 542
FatI CATG 7 cut(s) 563, 584, 625, 683, 777, 813, 854
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 395
FokI GGATG 3 cut(s) 236, 292, 537
FspBI CTAG 2 cut(s) 834, 900
GlaI GCGC 1 cut(s) 160
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 5 cut(s) 660, 681, 693, 724, 884
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 161
Hin1II CATG 7 cut(s) 567, 588, 629, 687, 781, 817, 858
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 478
HinfI GANTC 4 cut(s) 14, 302, 425, 699
HpaII CCGG 1 cut(s) 309
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 6 cut(s) 99, 118, 378, 396, 710, 772
Hpy188I TCNGA 5 cut(s) 357, 453, 496, 577, 651
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 6 cut(s) 99, 118, 378, 396, 710, 772
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 2 cut(s) 224, 265
HpyCH4V TGCA 8 cut(s) 4, 113, 278, 288, 629, 710, 890, 941
HpyF3I CTNAG 4 cut(s) 390, 636, 695, 719
Hsp92II CATG 7 cut(s) 567, 588, 629, 687, 781, 817, 858
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 4 cut(s) 52, 448, 844, 913
LmnI GCTCC 2 cut(s) 863, 932
LweI GCATC 2 cut(s) 132, 899
MaeI CTAG 2 cut(s) 834, 900
MaeIII GTNAC 3 cut(s) 209, 224, 504
MalI GATC 4 cut(s) 54, 450, 846, 915
MboI GATC 4 cut(s) 52, 448, 844, 913
MboII GAAGA 4 cut(s) 41, 190, 529, 590
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 1 cut(s) 712
MlyI GAGTC 2 cut(s) 23, 296
MnlI CCTC 5 cut(s) 142, 631, 633, 873, 935
Mph1103I ATGCAT 2 cut(s) 631, 892
MseI TTAA 3 cut(s) 38, 546, 821
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 207, 591
MvaI CCWGG 2 cut(s) 207, 591
MvnI CGCG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 683
NdeII GATC 4 cut(s) 52, 448, 844, 913
NlaIII CATG 7 cut(s) 567, 588, 629, 687, 781, 817, 858
NlaIV GGNNCC 3 cut(s) 621, 829, 865
NmeAIII GCCGAG 1 cut(s) 892
NsiI ATGCAT 2 cut(s) 631, 892
NspI RCATGY 1 cut(s) 781
PceI AGGCCT 1 cut(s) 724
PciI ACATGT 1 cut(s) 777
PfeI GAWTC 2 cut(s) 425, 699
PflMI CCANNNNNTGG 1 cut(s) 689
Ple19I CGATCG 1 cut(s) 847
PleI GAGTC 2 cut(s) 22, 296
PpsI GAGTC 2 cut(s) 22, 296
PscI ACATGT 1 cut(s) 777
PshAI GACNNNNGTC 1 cut(s) 585
Psp6I CCWGG 2 cut(s) 205, 589
PspGI CCWGG 2 cut(s) 205, 589
PspN4I GGNNCC 3 cut(s) 621, 829, 865
PspPI GGNCC 2 cut(s) 680, 882
PsuI RGATCY 1 cut(s) 448
PvuI CGATCG 1 cut(s) 847
RgaI GCGATCGC 1 cut(s) 847
RsaI GTAC 5 cut(s) 76, 242, 414, 782, 897
RsaNI GTAC 5 cut(s) 75, 241, 413, 781, 896
SaqAI TTAA 3 cut(s) 38, 546, 821
Sau3AI GATC 4 cut(s) 52, 448, 844, 913
Sau96I GGNCC 2 cut(s) 680, 882
SchI GAGTC 2 cut(s) 23, 296
ScrFI CCNGG 2 cut(s) 207, 591
SduI GDGCHC 1 cut(s) 712
SfaAI GCGATCGC 1 cut(s) 847
SfaNI GCATC 2 cut(s) 132, 899
SgfI GCGATCGC 1 cut(s) 847
SseBI AGGCCT 1 cut(s) 724
SspMI CTAG 2 cut(s) 834, 900
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 2 cut(s) 205, 589
StyI CCWWGG 2 cut(s) 162, 683
TaaI ACNGT 2 cut(s) 224, 265
TaqI TCGA 2 cut(s) 215, 483
TatI WGTACW 1 cut(s) 780
TfiI GAWTC 2 cut(s) 425, 699
Tru1I TTAA 3 cut(s) 38, 546, 821
Tru9I TTAA 3 cut(s) 38, 546, 821
TscAI CASTG 3 cut(s) 151, 227, 709
TspDTI ATGAA 5 cut(s) 42, 96, 530, 780, 947
TspRI CASTG 3 cut(s) 151, 227, 709
Van91I CCANNNNNTGG 1 cut(s) 689
VneI GTGCAC 1 cut(s) 708
XapI RAATTY 4 cut(s) 40, 234, 596, 665
XceI RCATGY 1 cut(s) 781
XmiI GTMKAC 1 cut(s) 395
XspI CTAG 2 cut(s) 834, 900
Zsp2I ATGCAT 2 cut(s) 631, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.