Rh5DG258700

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
30830613 .. 30831532
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG258700.1

Sequence Viewer

Length: 741 bp
ATGGAACCTCATGCATACCCTGAGGCATATTTTCGGAAAGGTGGCCTGAAATTTTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGTGCACCAGAACTAAGGCCTAATCCAATTTATAGTTTCTATTTTGTGTATAATGATGATGAAGTTTACTACATGTACAAACTTCAAAGCAAGTCTGTAATTTCAATCATGGTCTTAAATGGAACCACTAGCACACGCGATCGCCTTACATGGATTGGAGCCGAGCAAACTTGGAGGGCCTATGCATCAGTACCTAGAGATTTCTGTGATCAATATAACCTCTGTGGAGCAAATGCAAATTGTATCATCAGTAACAATCCAGTATGTGAATGTCTACAAGGATTCACGCCTAAGTCACCAGAGAAATGGAATTCGACAGACTGGTCACTTGGATGTATGCGCAAGAAACCCCTAAGCTGCCAGGAAAGTGATAAAGATGGGTTTGTCAAGTTCAATAACTTGAAATTGCCGGATACTACACATTCTTGGCTGAACAAAAGTATGAACATCAAGGAATGCAGAGCCAAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAGCTCGGACATCAGAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTGATCTACTAGATATCAGAAAGTTTCCGGATGCTGGCCAGGATCTATACATTCGAATGTCGGCTTCAGAGATAGGTATGGGACTTTGTAACATGAACTTCTGA

Protein Analysis

246

Amino Acids

27.98

Weight (kDa)

8.36

Isoelectric Point (pI)

46.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 19 - 129 1.5e-29 S-locus glycoprotein domain
PAN_2 PF08276 150 - 218 1.9e-23 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27300
fragaria_vesca FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 412
Acc16I TGCGCA 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 74
AccI GTMKAC 1 cut(s) 364
AccII CGCG 1 cut(s) 228
AccIII TCCGGA 1 cut(s) 664
AclWI GGATC 1 cut(s) 687
AcoI YGGCCR 1 cut(s) 673
AcsI RAATTY 2 cut(s) 50, 400
AcuI CTGAAG 1 cut(s) 687
AfaI GTAC 2 cut(s) 167, 282
AfiI CCNNNNNNNGG 2 cut(s) 74, 671
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 5 cut(s) 176, 195, 484, 493, 565
AjnI CCWGG 2 cut(s) 450, 675
AloI GAACNNNNNNTCC 2 cut(s) 557, 589
AluBI AGCT 2 cut(s) 447, 594
AluI AGCT 2 cut(s) 447, 594
Alw21I GWGCWC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 93
AlwI GGATC 1 cut(s) 687
Aor13HI TCCGGA 1 cut(s) 664
AoxI GGCC 6 cut(s) 43, 64, 76, 107, 267, 673
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 447, 621
ApoI RAATTY 2 cut(s) 50, 400
AsiSI GCGATCGC 1 cut(s) 232
AspLEI GCGC 2 cut(s) 432, 626
AspS9I GGNCC 2 cut(s) 65, 267
AsuHPI GGTGA 2 cut(s) 378, 650
AsuII TTCGAA 1 cut(s) 691
AxyI CCTNAGG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 434, 608
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 2 cut(s) 452, 677
BciVI GTATCC 1 cut(s) 496
BclI TGATCA 1 cut(s) 298
BfaI CTAG 3 cut(s) 219, 285, 647
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 2 cut(s) 448, 622
BlsI GCNGC 2 cut(s) 449, 623
Bme1390I CCNGG 2 cut(s) 452, 677
BmgT120I GGNCC 2 cut(s) 65, 267
BmiI GGNNCC 3 cut(s) 6, 214, 250
BmrFI CCNGG 2 cut(s) 452, 677
BmsI GCATC 2 cut(s) 284, 658
Bpu10I CCTNAGC 1 cut(s) 443
Bpu14I TTCGAA 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 664
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 671
Bse1I ACTGG 2 cut(s) 350, 416
Bse21I CCTNAGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 664
BseBI CCWGG 2 cut(s) 452, 677
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 2 cut(s) 428, 673
BseLI CCNNNNNNNGG 2 cut(s) 74, 671
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 2 cut(s) 350, 416
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 2 cut(s) 434, 608
Bsh1236I CGCG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 6 cut(s) 45, 66, 78, 109, 269, 675
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 500, 665
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 2 cut(s) 74, 671
BsmFI GGGAC 1 cut(s) 732
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 6 cut(s) 45, 66, 78, 109, 269, 675
Bsp119I TTCGAA 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 664
Bsp1407I TGTACA 1 cut(s) 165
Bsp143I GATC 4 cut(s) 229, 298, 640, 679
Bsp19I CCATGG 1 cut(s) 68
BspANI GGCC 6 cut(s) 45, 66, 78, 109, 269, 675
BspCNI CTCAG 1 cut(s) 13
BspEI TCCGGA 1 cut(s) 664
BspFNI CGCG 1 cut(s) 228
BspLI GGNNCC 3 cut(s) 6, 214, 250
BspPI GGATC 1 cut(s) 687
BspT104I TTCGAA 1 cut(s) 691
BsrGI TGTACA 1 cut(s) 165
BsrI ACTGG 2 cut(s) 350, 416
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 4 cut(s) 229, 298, 640, 679
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 452, 677
Bst4CI ACNGT 1 cut(s) 572
BstAUI TGTACA 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 691
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 5 cut(s) 21, 80, 104, 381, 443
BstDSI CCRYGG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 428, 673
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 432, 626
BstKTI GATC 4 cut(s) 232, 301, 643, 682
BstMBI GATC 4 cut(s) 229, 298, 640, 679
BstMCI CGRYCG 1 cut(s) 232
BstNI CCWGG 2 cut(s) 452, 677
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 450, 675
BstSLI GKGCMC 1 cut(s) 97
BstUI CGCG 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 434, 608
BstX2I RGATCY 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 1 cut(s) 679
Bsu36I CCTNAGG 1 cut(s) 21
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 6 cut(s) 45, 66, 78, 109, 269, 675
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 428, 673
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 673
CfoI GCGC 2 cut(s) 432, 626
Cfr13I GGNCC 2 cut(s) 65, 267
Csp6I GTAC 2 cut(s) 166, 281
CviAII CATG 6 cut(s) 11, 69, 163, 199, 240, 730
CviQI GTAC 2 cut(s) 166, 281
DdeI CTNAG 5 cut(s) 21, 80, 104, 381, 443
DpnI GATC 4 cut(s) 231, 300, 642, 681
DpnII GATC 4 cut(s) 229, 298, 640, 679
DrdI GACNNNNNNGTC 1 cut(s) 412
DseDI GACNNNNNNGTC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 673
Eco130I CCWWGG 1 cut(s) 68
Eco147I AGGCCT 1 cut(s) 109
Eco32I GATATC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 450, 675
EcoRV GATATC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 68
EcoT22I ATGCAT 2 cut(s) 16, 277
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 6 cut(s) 14, 72, 166, 202, 243, 733
FaqI GGGAC 1 cut(s) 732
FatI CATG 6 cut(s) 10, 68, 162, 198, 239, 729
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 448, 622
FokI GGATG 2 cut(s) 435, 680
Fsp4HI GCNGC 2 cut(s) 448, 622
FspBI CTAG 3 cut(s) 219, 285, 647
FspI TGCGCA 1 cut(s) 431
GlaI GCGC 2 cut(s) 431, 625
GluI GCNGC 2 cut(s) 448, 622
HaeIII GGCC 6 cut(s) 45, 66, 78, 109, 269, 675
HapII CCGG 2 cut(s) 500, 665
HhaI GCGC 2 cut(s) 432, 626
Hin1II CATG 6 cut(s) 14, 72, 166, 202, 243, 733
Hin6I GCGC 2 cut(s) 430, 624
HinP1I GCGC 2 cut(s) 430, 624
HinfI GANTC 2 cut(s) 84, 372
HpaII CCGG 2 cut(s) 500, 665
HphI GGTGA 2 cut(s) 378, 650
Hpy166II GTNNAC 3 cut(s) 95, 157, 365
Hpy188I TCNGA 6 cut(s) 36, 598, 605, 656, 706, 740
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 3 cut(s) 95, 157, 365
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4V TGCA 5 cut(s) 14, 95, 275, 326, 549
HpyF3I CTNAG 5 cut(s) 21, 80, 104, 381, 443
Hsp92II CATG 6 cut(s) 14, 72, 166, 202, 243, 733
HspAI GCGC 2 cut(s) 430, 624
Kpn2I TCCGGA 1 cut(s) 664
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 229, 298, 640, 679
LmnI GCTCC 2 cut(s) 248, 317
Lsp1109I GCAGC 2 cut(s) 434, 608
LweI GCATC 2 cut(s) 284, 658
MaeI CTAG 3 cut(s) 219, 285, 647
MaeIII GTNAC 4 cut(s) 341, 384, 414, 725
MalI GATC 4 cut(s) 231, 300, 642, 681
MboI GATC 4 cut(s) 229, 298, 640, 679
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 675
MluCI AATT 6 cut(s) 50, 117, 189, 328, 400, 494
MluNI TGGCCA 1 cut(s) 675
MnlI CCTC 5 cut(s) 16, 18, 258, 320, 605
Mox20I TGGCCA 1 cut(s) 675
Mph1103I ATGCAT 2 cut(s) 16, 277
MroI TCCGGA 1 cut(s) 664
MscI TGGCCA 1 cut(s) 675
MseI TTAA 1 cut(s) 206
MslI CAYNNNNRTG 2 cut(s) 421, 692
Msp20I TGGCCA 1 cut(s) 675
MspI CCGG 2 cut(s) 500, 665
MspR9I CCNGG 2 cut(s) 452, 677
Mva1269I GAATGC 1 cut(s) 551
MvaI CCWGG 2 cut(s) 452, 677
MvnI CGCG 1 cut(s) 228
NcoI CCATGG 1 cut(s) 68
NdeII GATC 4 cut(s) 229, 298, 640, 679
NlaIII CATG 6 cut(s) 14, 72, 166, 202, 243, 733
NlaIV GGNNCC 3 cut(s) 6, 214, 250
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 2 cut(s) 384, 414
NsbI TGCGCA 1 cut(s) 431
NsiI ATGCAT 2 cut(s) 16, 277
NspI RCATGY 1 cut(s) 166
NspV TTCGAA 1 cut(s) 691
PceI AGGCCT 1 cut(s) 109
PciI ACATGT 1 cut(s) 162
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 2 cut(s) 84, 372
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 2 cut(s) 449, 623
Ple19I CGATCG 1 cut(s) 232
PscI ACATGT 1 cut(s) 162
Psp6I CCWGG 2 cut(s) 450, 675
PspGI CCWGG 2 cut(s) 450, 675
PspN4I GGNNCC 3 cut(s) 6, 214, 250
PspPI GGNCC 2 cut(s) 65, 267
PsuI RGATCY 1 cut(s) 679
PvuI CGATCG 1 cut(s) 232
RgaI GCGATCGC 1 cut(s) 232
RsaI GTAC 2 cut(s) 167, 282
RsaNI GTAC 2 cut(s) 166, 281
RseI CAYNNNNRTG 2 cut(s) 421, 692
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 2 cut(s) 448, 622
Sau3AI GATC 4 cut(s) 229, 298, 640, 679
Sau96I GGNCC 2 cut(s) 65, 267
ScrFI CCNGG 2 cut(s) 452, 677
SduI GDGCHC 1 cut(s) 97
SetI ASST 8 cut(s) 10, 43, 286, 312, 449, 596, 616, 715
SfaAI GCGATCGC 1 cut(s) 232
SfaNI GCATC 2 cut(s) 284, 658
SfuI TTCGAA 1 cut(s) 691
SgfI GCGATCGC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 421, 692
Sse9I AATT 6 cut(s) 50, 117, 189, 328, 400, 494
SseBI AGGCCT 1 cut(s) 109
SspMI CTAG 3 cut(s) 219, 285, 647
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 450, 675
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 572
TaqI TCGA 2 cut(s) 404, 691
TasI AATT 6 cut(s) 50, 117, 189, 328, 400, 494
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 84, 372
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 2 cut(s) 384, 414
TseI GCWGC 2 cut(s) 447, 621
Tsp45I GTSAC 2 cut(s) 384, 414
TspDTI ATGAA 2 cut(s) 165, 548
TspRI CASTG 1 cut(s) 94
Van91I CCANNNNNTGG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 93
XapI RAATTY 2 cut(s) 50, 400
XceI RCATGY 1 cut(s) 166
XmiI GTMKAC 1 cut(s) 364
XspI CTAG 3 cut(s) 219, 285, 647
Zsp2I ATGCAT 2 cut(s) 16, 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.