Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000207

Physical Location & Seq

Genomic Coordinates Forward (+)

30871873 .. 30872619

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGCCTCATGCATACCCTGAGGCATATCTTCGGAAAAGTGGTGTGAAATTTTATCGTTCTGGCCCATGGAATGGCCTAAGATTCAGTGGGGCACCAGAACTAGGGCCTAATTCAATTTATAGTTTTGATTTTGTGTATAATGATGATGAAGTGTACTACATGTACAAACTTCAAAACAAGTCTGTAATTTCAATTGTGGTCTTAAATGGAACCAGGAGTACGCGCCCACGCCTTACATGGATTGAAGCAGAGCAAACTTGGAGGGCCGCAACAGTATCTAGAGATTTCTGTGATCAATATGGCCTCTGTGGAGCAAATGCAGTGTGTATCGTTAGTAACAATCCAGTATGTCAATGTCTACAAGGATTCACGCCCATGTCACCAGAGAAATGGAATTTGACAGACTGGTCACTTGGATGTACGCGCAAGAAACCCCAAAGCTGCCAGGAAAGTGATAAAGACGGGTTTGTCAAATTCACTGACTTGAAATTGCCAGATACTACACATTCTTGGGTGAACAAAAGTATGAACATCAAGGAATGCAGAGCCGAATGCTTGAACAACTGTTCCTGTATGGCTTATACAAGCTCGGACATTAGAGCAGGAGGCTCTGGCTGCGCCATTTGGTTTGGTGATCTATTAGATATCAGACAGTTTCCTGGTGATGGCCAAGATCTATACATTCGAATGTTAGCTTCAGAGATAGGTAAATATGTAACTCTGTTACATGAACTGCTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

248

Amino Acids

28.08

Weight (kDa)

6.31

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	19 - 127	8.1e-28	S-locus glycoprotein domain
PAN_2	PF08276	149 - 217	3.7e-23	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000207)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27300
fragaria_vesca	FvH4_3g15930 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g15980 FvH4_3g21350 FvH4_3g21400 FvH4_3g21400 FvH4_6g12332
malus_domestica	MD02G1167100.v1.1 MD02G1167200.v1.1 MD03G1185600.v1.1 MD05G1213900.v1.1 MD05G1214100.v1.1 MD05G1214200.v1.1 MD05G1214700.v1.1 MD05G1216300.v1.1 MD05G1216800.v1.1 MD05G1217300.v1.1 MD05G1218000.v1.1 MD11G1231100.v1.1 MD11G1231200.v1.1 MD11G1231400.v1.1 MD11G1231500.v1.1 MD11G1232400.v1.1 MD11G1232500.v1.1
prunus_persica	Prupe.4G142300_v2.0.a1 Prupe.4G142400_v2.0.a1 Prupe.4G142500_v2.0.a1 Prupe.4G142600_v2.0.a1 Prupe.4G142800_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195000_v2.0.a1 Prupe.4G195100_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195300_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195400_v2.0.a1 Prupe.4G195500_v2.0.a1 Prupe.4G195700_v2.0.a1 Prupe.4G195900_v2.0.a1
pyrus_communis	pycom03g16540 pycom05g19920 pycom11g20460 pycom11g20480 pycom11g20490 pycom11g20500 pycom11g20530
rosa_chinensis	RchiOBHm_Chr2g0139311 RchiOBHm_Chr2g0139351 RchiOBHm_Chr5g0026801 RchiOBHm_Chr5g0026851 RchiOBHm_Chr5g0026891 RchiOBHm_Chr5g0026911 RchiOBHm_Chr5g0036571 RchiOBHm_Chr5g0036591 RchiOBHm_Chr5g0036721 RchiOBHm_Chr5g0036741 RchiOBHm_Chr7g0222981
rosa_laevigata	RLG00000002006 RLG00000019807 RLG00000032964 RLG00000032968 RLG00000032969 RLG00000033706 RLG00000033708 RLG00000033712 RLG00000033716
rosa_multiflora	Rmu_co8256651.1_g000001 Rmu_co8279377.1_g000001 Rmu_co8429919.1_g000001 Rmu_co8490103.1_g000001 Rmu_sc0000774.1_g000002 Rmu_sc0002525.1_g000012 Rmu_sc0004223.1_g000008 Rmu_sc0004390.1_g000002 Rmu_sc0006059.1_g000014 Rmu_sc0006059.1_g000024 Rmu_sc0006514.1_g000020 Rmu_sc0014333.1_g000002 Rmu_ssc0000172.1_g000018 Rmu_ssc0000172.1_g000029
rosa_roxburghii	Rroxscaffold_1G00044230 Rroxscaffold_1G00044260 Rroxscaffold_1G00044320 Rroxscaffold_1G00044340 Rroxscaffold_1G00052560 Rroxscaffold_1G00052570 Rroxscaffold_1G00052660 Rroxscaffold_1G00052720 Rroxscaffold_2G00105450 Rroxscaffold_2G00105460
rosa_rugosa	Rorug02G0356900 Rorug02G0357000 Rorug02G0357100 Rorug02G0357200 Rorug02G0357300 Rorug02G0357400 Rorug02G0357500 Rorug02G0357600 Rorug05G0095400 Rorug05G0095500 Rorug05G0095500 Rorug05G0095600 Rorug05G0095700 Rorug05G0095800 Rorug05G0157700 Rorug05G0157800
rosa_samantha	Rh2AG406800 Rh2AG406900 Rh2BG417300 Rh2CG392900 Rh2DG426200 Rh5AG189300 Rh5AG249400 Rh5AG250100 Rh5BG186300 Rh5BG186900 Rh5BG187000 Rh5BG249500 Rh5BG250600 Rh5BG250900 Rh5BG251500 Rh5BG251800 Rh5CG205500 Rh5CG206300 Rh5CG206700 Rh5CG283000 Rh5CG283300 Rh5CG283500 Rh5DG188500 Rh5DG188700 Rh5DG258700 Rh5DG258900 Rh5DG259600 Rh5DG259900 Rh7CG375800 Rh7DG352500
rosa_wichuraiana	Rw2G032960 Rw2G032970 Rw2G033220 Rw2G033230 Rw5G017130 Rw5G017230 Rw5G022940 Rw5G022960 Rw5G022980 Rw7G030420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	409, 470
AccB1I	GGYRCC	1 cut(s)	94
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	361
AccII	CGCG	2 cut(s)	226, 427
AciI	CCGC	1 cut(s)	270
AcoI	YGGCCR	1 cut(s)	670
AcsI	RAATTY	3 cut(s)	50, 397, 476
AcuI	CTGAAG	1 cut(s)	684
AfaI	GTAC	4 cut(s)	158, 167, 223, 424
AfiI	CCNNNNNNNGG	3 cut(s)	74, 104, 668
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	117, 176, 195, 248, 490, 562
AjnI	CCWGG	3 cut(s)	215, 447, 661
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	3 cut(s)	444, 591, 698
AluI	AGCT	3 cut(s)	444, 591, 698
AoxI	GGCC	6 cut(s)	64, 76, 107, 267, 304, 670
ApeKI	GCWGC	2 cut(s)	444, 618
ApoI	RAATTY	3 cut(s)	50, 397, 476
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	3 cut(s)	228, 429, 623
AspS9I	GGNCC	3 cut(s)	65, 107, 267
AsuHPI	GGTGA	4 cut(s)	375, 529, 647, 677
AsuII	TTCGAA	1 cut(s)	688
AxyI	CCTNAGG	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	431, 605
BccI	CCATC	1 cut(s)	662
BciT130I	CCWGG	3 cut(s)	217, 449, 663
BclI	TGATCA	1 cut(s)	295
BfaI	CTAG	2 cut(s)	104, 282
BglII	AGATCT	1 cut(s)	676
BisI	GCNGC	3 cut(s)	270, 445, 619
BlsI	GCNGC	3 cut(s)	271, 446, 620
Bme1390I	CCNGG	3 cut(s)	217, 449, 663
BmgT120I	GGNCC	3 cut(s)	65, 107, 267
BmiI	GGNNCC	3 cut(s)	6, 96, 214
BmrFI	CCNGG	3 cut(s)	217, 449, 663
Bpu14I	TTCGAA	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 104, 668
Bse1I	ACTGG	2 cut(s)	347, 413
Bse21I	CCTNAGG	1 cut(s)	21
BseBI	CCWGG	3 cut(s)	217, 449, 663
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	425
BseLI	CCNNNNNNNGG	3 cut(s)	74, 104, 668
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	347, 413
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	431, 605
Bsh1236I	CGCG	2 cut(s)	226, 427
BshFI	GGCC	6 cut(s)	66, 78, 109, 269, 306, 672
BshNI	GGYRCC	1 cut(s)	94
BslI	CCNNNNNNNGG	3 cut(s)	74, 104, 668
BsmI	GAATGC	2 cut(s)	548, 560
BsnI	GGCC	6 cut(s)	66, 78, 109, 269, 306, 672
Bsp119I	TTCGAA	1 cut(s)	688
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	295, 637, 676
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	6 cut(s)	66, 78, 109, 269, 306, 672
BspCNI	CTCAG	1 cut(s)	13
BspFNI	CGCG	2 cut(s)	226, 427
BspLI	GGNNCC	3 cut(s)	6, 96, 214
BspT104I	TTCGAA	1 cut(s)	688
BspT107I	GGYRCC	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	347, 413
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	3 cut(s)	295, 637, 676
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	3 cut(s)	217, 449, 663
Bst4CI	ACNGT	3 cut(s)	277, 569, 657
BstAUI	TGTACA	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	688
BstDEI	CTNAG	2 cut(s)	21, 80
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	425
BstFNI	CGCG	2 cut(s)	226, 427
BstHHI	GCGC	3 cut(s)	228, 429, 623
BstKTI	GATC	3 cut(s)	298, 640, 679
BstMBI	GATC	3 cut(s)	295, 637, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	618
BstNI	CCWGG	3 cut(s)	217, 449, 663
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	3 cut(s)	215, 447, 661
BstSLI	GKGCMC	1 cut(s)	97
BstUI	CGCG	2 cut(s)	226, 427
BstV1I	GCAGC	2 cut(s)	431, 605
BstX2I	RGATCY	1 cut(s)	676
BstXI	CCANNNNNNTGG	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	676
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	6 cut(s)	66, 78, 109, 269, 306, 672
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	425
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	3 cut(s)	94, 330, 480
CfoI	GCGC	3 cut(s)	228, 429, 623
Cfr13I	GGNCC	3 cut(s)	65, 107, 267
Csp6I	GTAC	4 cut(s)	157, 166, 222, 423
CviAII	CATG	6 cut(s)	11, 69, 163, 240, 379, 731
CviQI	GTAC	4 cut(s)	157, 166, 222, 423
DdeI	CTNAG	2 cut(s)	21, 80
DpnI	GATC	3 cut(s)	297, 639, 678
DpnII	GATC	3 cut(s)	295, 637, 676
DrdI	GACNNNNNNGTC	2 cut(s)	409, 470
DseDI	GACNNNNNNGTC	2 cut(s)	409, 470
EaeI	YGGCCR	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	684
Eco81I	CCTNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	215, 447, 661
EcoRV	GATATC	1 cut(s)	649
EcoT14I	CCWWGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	6 cut(s)	14, 72, 166, 243, 382, 734
FatI	CATG	6 cut(s)	10, 68, 162, 239, 378, 730
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	270, 445, 619
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	270, 445, 619
FspBI	CTAG	2 cut(s)	104, 282
GlaI	GCGC	3 cut(s)	227, 428, 622
GluI	GCNGC	3 cut(s)	270, 445, 619
HaeIII	GGCC	6 cut(s)	66, 78, 109, 269, 306, 672
HhaI	GCGC	3 cut(s)	228, 429, 623
Hin1II	CATG	6 cut(s)	14, 72, 166, 243, 382, 734
Hin6I	GCGC	3 cut(s)	226, 427, 621
HinP1I	GCGC	3 cut(s)	226, 427, 621
HinfI	GANTC	2 cut(s)	84, 369
HphI	GGTGA	4 cut(s)	375, 529, 647, 677
Hpy166II	GTNNAC	3 cut(s)	157, 362, 520
Hpy188I	TCNGA	4 cut(s)	36, 595, 653, 703
Hpy188III	TCNNGA	1 cut(s)	282
Hpy8I	GTNNAC	3 cut(s)	157, 362, 520
HpyCH4III	ACNGT	3 cut(s)	277, 569, 657
HpyCH4V	TGCA	3 cut(s)	14, 323, 546
HpyF10VI	GCNNNNNNNGC	1 cut(s)	618
HpyF3I	CTNAG	2 cut(s)	21, 80
Hsp92II	CATG	6 cut(s)	14, 72, 166, 243, 382, 734
HspAI	GCGC	3 cut(s)	226, 427, 621
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 637, 676
LmnI	GCTCC	2 cut(s)	4, 314
Lsp1109I	GCAGC	2 cut(s)	431, 605
MaeI	CTAG	2 cut(s)	104, 282
MaeIII	GTNAC	5 cut(s)	338, 381, 411, 718, 726
MalI	GATC	3 cut(s)	297, 639, 678
MboI	GATC	3 cut(s)	295, 637, 676
MboII	GAAGA	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	676
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	8 cut(s)	50, 112, 117, 189, 195, 397, 476, 491
MluNI	TGGCCA	1 cut(s)	672
MnlI	CCTC	5 cut(s)	16, 18, 258, 317, 602
Mox20I	TGGCCA	1 cut(s)	672
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	2 cut(s)	206, 745
MslI	CAYNNNNRTG	3 cut(s)	377, 418, 689
Msp20I	TGGCCA	1 cut(s)	672
MspR9I	CCNGG	3 cut(s)	217, 449, 663
MunI	CAATTG	1 cut(s)	195
Mva1269I	GAATGC	2 cut(s)	548, 560
MvaI	CCWGG	3 cut(s)	217, 449, 663
MvnI	CGCG	2 cut(s)	226, 427
MwoI	GCNNNNNNNGC	1 cut(s)	618
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	3 cut(s)	295, 637, 676
NlaIII	CATG	6 cut(s)	14, 72, 166, 243, 382, 734
NlaIV	GGNNCC	3 cut(s)	6, 96, 214
NmuCI	GTSAC	2 cut(s)	381, 411
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	688
PciI	ACATGT	1 cut(s)	162
PctI	GAATGC	2 cut(s)	548, 560
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	84, 369
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	271, 446, 620
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	215, 447, 661
PspGI	CCWGG	3 cut(s)	215, 447, 661
PspN4I	GGNNCC	3 cut(s)	6, 96, 214
PspPI	GGNCC	3 cut(s)	65, 107, 267
PsrI	GAACNNNNNNTAC	2 cut(s)	205, 237
PsuI	RGATCY	1 cut(s)	676
RsaI	GTAC	4 cut(s)	158, 167, 223, 424
RsaNI	GTAC	4 cut(s)	157, 166, 222, 423
RseI	CAYNNNNRTG	3 cut(s)	377, 418, 689
SaqAI	TTAA	2 cut(s)	206, 745
SatI	GCNGC	3 cut(s)	270, 445, 619
Sau3AI	GATC	3 cut(s)	295, 637, 676
Sau96I	GGNCC	3 cut(s)	65, 107, 267
ScrFI	CCNGG	3 cut(s)	217, 449, 663
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	4 cut(s)	446, 593, 700, 712
SfuI	TTCGAA	1 cut(s)	688
SmiMI	CAYNNNNRTG	3 cut(s)	377, 418, 689
Sse9I	AATT	8 cut(s)	50, 112, 117, 189, 195, 397, 476, 491
SsiI	CCGC	1 cut(s)	270
SspMI	CTAG	2 cut(s)	104, 282
StyD4I	CCNGG	3 cut(s)	215, 447, 661
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	277, 569, 657
TaqI	TCGA	1 cut(s)	688
TasI	AATT	8 cut(s)	50, 112, 117, 189, 195, 397, 476, 491
TatI	WGTACW	2 cut(s)	156, 165
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	84, 369
Tru1I	TTAA	2 cut(s)	206, 745
Tru9I	TTAA	2 cut(s)	206, 745
TscAI	CASTG	3 cut(s)	94, 330, 487
TseFI	GTSAC	2 cut(s)	381, 411
TseI	GCWGC	2 cut(s)	444, 618
Tsp45I	GTSAC	2 cut(s)	381, 411
TspDTI	ATGAA	3 cut(s)	165, 545, 747
TspRI	CASTG	3 cut(s)	94, 330, 487
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	3 cut(s)	50, 397, 476
XbaI	TCTAGA	1 cut(s)	281
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	237
XmiI	GTMKAC	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	104, 282
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.